pycom14g20590

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0002133
Physical Location & Seq
Reverse (-)
21621470 .. 21623851
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1176 bp
ATGGGATCGACAGCGATGAAGAAACAAACAACAACATCAGCAGCTTCATCAAATCCTCCTTCTTCTTCAGTTGTGTCGTCGGCTCCTCCAAGTCCAAGTAGTTTTATCAGCAGCAACAAGTCCACCATGAATCGGAAACCCACAGGGCTCTTATCCGTCCGTGACGATATAGAAGAGAGGATGAAGATGCTGGCATCTCACACAGCCCAACAAGACACTGGAGACACCTTCGCTGAACGAGCCGACGCTTACTACAAACGACGCCCTCAGCTGCTCTCTCTGCTTCAAGACTTGTACAATGCCTACGTCACATTATCTGATCGTTACATTCATACAATCGCCAAAACCAATCATCGCCGTGGACACTCCTCCCAAACCTCAATCATTGTTAATGACTACTACGACGACTGTCATGACCAACAAGATGCCGATGGTGATACATTAAGCCAGATGGATTCGGACGTGGGCAGTTCCCTCTCCTATCAGCCACAATTATCTCTTGCTGCTGCCCGGGATGATAACATGGTGTTGGATTTGGATGCAATTGTTGCGGAGGTTGTGATGAAGAATGTGGAATGCGATATCTTACTTGATGAGGCCAGCACCATGGGGAGGCGATACAATGAGTCATCAAGGAAGATAAAGTTGCAGAAGAGCTTGCTGGAGGTGCTGGAGTCCGAAAGGCTCATACTACTGAATGAGAATGCTAAGTTGGGGTACAAAGTGGGTGCATTGGTGGAAGAGAACAAAGACATCGCGTCCGAGTCCATGTTCATGAGGAGGAAGGCTGGAGAGCTGGCTAGGTGTTTGCTGAAGGTGAGGGAGGATCAGAGAGTGTGCATGCTTAGCCGTAAAATCGAGGACCTGCAGGGCCAGATCTATGGGTTGGAGAAGAGGAACAAGGAGTACTATGAGCAACTTGTGAAGAGAGACCAATGGTCCTCTCAACTTGTACAAGAAGAGAGTACTAGCATAAACAACAAAAGCAAGTTTAACGGGAATGAAGTGAATTTGGAGGTTTGCTTCCAAATAGGGAAGATCAATCGGAGGCTGAAGAGAGGTAATAGCAATGTGAAGGATTTTGGCACTGCAAGTGGGAAGAAGGGTTGGAGTTGGTGGGAAAAGGTCAAGAACATGGACTTGTTTCTATGCGGACATAATTCAAGCTCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

392

Amino Acids

44.09

Weight (kDa)

7.58

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 50 - 109 1.7e-09 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 873
AccII CGCG 1 cut(s) 758
AciI CCGC 2 cut(s) 551, 1152
AclWI GGATC 2 cut(s) 13, 834
AcsI RAATTY 1 cut(s) 1009
AcuI CTGAAG 3 cut(s) 51, 833, 1073
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 5 cut(s) 296, 719, 908, 954, 967
AfiI CCNNNNNNNGG 2 cut(s) 132, 612
AgsI TTSAA 2 cut(s) 287, 1164
AhdI GACNNNNNGTC 2 cut(s) 757, 937
AjiI CACGTC 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
AluBI AGCT 5 cut(s) 44, 271, 657, 796, 1167
AluI AGCT 5 cut(s) 44, 271, 657, 796, 1167
Alw26I GTCTC 2 cut(s) 216, 924
AlwI GGATC 2 cut(s) 13, 834
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 2 cut(s) 597, 871
ApeKI GCWGC 5 cut(s) 41, 111, 271, 503, 506
ApoI RAATTY 1 cut(s) 1009
AspS9I GGNCC 3 cut(s) 862, 871, 939
AsuC2I CCSGG 2 cut(s) 511, 512
AsuHPI GGTGA 2 cut(s) 446, 829
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 2 cut(s) 862, 939
BanII GRGCYC 1 cut(s) 150
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 5 cut(s) 53, 123, 258, 490, 493
BccI CCATC 2 cut(s) 425, 445
BceAI ACGGC 2 cut(s) 342, 834
BcnI CCSGG 2 cut(s) 511, 512
BcoDI GTCTC 2 cut(s) 216, 924
BfaI CTAG 2 cut(s) 801, 969
BfmI CTRYAG 1 cut(s) 866
BfuAI ACCTGC 1 cut(s) 873
BglII AGATCT 1 cut(s) 876
BisI GCNGC 5 cut(s) 42, 112, 272, 504, 507
BlpI GCTNAGC 1 cut(s) 845
BlsI GCNGC 5 cut(s) 43, 113, 273, 505, 508
BmcAI AGTACT 2 cut(s) 908, 967
Bme1390I CCNGG 2 cut(s) 511, 512
Bme18I GGWCC 2 cut(s) 862, 939
BmeRI GACNNNNNGTC 2 cut(s) 757, 937
BmeT110I CYCGRG 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 3 cut(s) 862, 871, 939
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 2 cut(s) 511, 512
BmsI GCATC 4 cut(s) 177, 203, 415, 529
BoxI GACNNNNGTC 1 cut(s) 408
BpmI CTGGAG 4 cut(s) 240, 683, 692, 810
Bpu10I CCTNAGC 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 845
BpuMI CCSGG 2 cut(s) 511, 512
BsaHI GRCGYC 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 924
BsaJI CCNNGG 3 cut(s) 358, 510, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 612
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 1075
BseDI CCNNGG 3 cut(s) 358, 510, 606
BseGI GGATG 3 cut(s) 186, 520, 544
BseLI CCNNNNNNNGG 2 cut(s) 132, 612
BseMI GCAATG 1 cut(s) 1075
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 3 cut(s) 75, 358, 793
BseXI GCAGC 5 cut(s) 53, 123, 258, 490, 493
Bsh1236I CGCG 1 cut(s) 758
BshFI GGCC 2 cut(s) 599, 873
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 1 cut(s) 511
BslI CCNNNNNNNGG 2 cut(s) 132, 612
BsmAI GTCTC 2 cut(s) 216, 924
BsmI GAATGC 2 cut(s) 581, 709
BsnI GGCC 2 cut(s) 599, 873
Bso31I GGTCTC 1 cut(s) 924
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 150
Bsp1407I TGTACA 2 cut(s) 294, 952
Bsp143I GATC 5 cut(s) 5, 319, 826, 876, 1038
Bsp1720I GCTNAGC 1 cut(s) 845
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 2 cut(s) 551, 1152
BspANI GGCC 2 cut(s) 599, 873
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 758
BspHI TCATGA 2 cut(s) 412, 774
BspLI GGNNCC 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 870
BspMI ACCTGC 1 cut(s) 873
BspPI GGATC 2 cut(s) 13, 834
BspQI GCTCTTC 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 924
BsrDI GCAATG 1 cut(s) 1075
BsrGI TGTACA 2 cut(s) 294, 952
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 3 cut(s) 358, 510, 606
BssMI GATC 5 cut(s) 5, 319, 826, 876, 1038
BssNI GRCGYC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 606
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 7 cut(s) 168, 647, 735, 887, 920, 954, 1049
BstACI GRCGYC 1 cut(s) 262
BstAPI GCANNNNNTGC 1 cut(s) 548
BstAUI TGTACA 2 cut(s) 294, 952
BstC8I GCNNGC 5 cut(s) 192, 601, 659, 798, 842
BstDEI CTNAG 3 cut(s) 267, 708, 845
BstDSI CCRYGG 2 cut(s) 358, 606
BstF5I GGATG 3 cut(s) 186, 520, 544
BstFNI CGCG 1 cut(s) 758
BstKTI GATC 5 cut(s) 8, 322, 829, 879, 1041
BstMAI GTCTC 2 cut(s) 216, 924
BstMBI GATC 5 cut(s) 5, 319, 826, 876, 1038
BstMWI GCNNNNNNNGC 5 cut(s) 239, 280, 548, 667, 846
BstNSI RCATGY 1 cut(s) 844
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 2 cut(s) 509, 510
BstSFI CTRYAG 1 cut(s) 866
BstUI CGCG 1 cut(s) 758
BstV1I GCAGC 5 cut(s) 53, 123, 258, 490, 493
BstX2I RGATCY 1 cut(s) 876
BstXI CCANNNNNNTGG 2 cut(s) 607, 881
BstYI RGATCY 1 cut(s) 876
BsuRI GGCC 2 cut(s) 599, 873
BtgI CCRYGG 2 cut(s) 358, 606
BtgZI GCGATG 3 cut(s) 29, 338, 739
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 3 cut(s) 186, 520, 544
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 2 cut(s) 216, 1086
BveI ACCTGC 1 cut(s) 873
Cac8I GCNNGC 5 cut(s) 192, 601, 659, 798, 842
CciI TCATGA 2 cut(s) 412, 774
Cfr13I GGNCC 3 cut(s) 862, 871, 939
Cfr9I CCCGGG 1 cut(s) 510
CseI GACGC 3 cut(s) 254, 270, 747
Csp6I GTAC 5 cut(s) 295, 718, 907, 953, 966
CviAII CATG 8 cut(s) 127, 413, 523, 607, 769, 775, 841, 1135
CviQI GTAC 5 cut(s) 295, 718, 907, 953, 966
DdeI CTNAG 3 cut(s) 267, 708, 845
DpnI GATC 5 cut(s) 7, 321, 828, 878, 1040
DpnII GATC 5 cut(s) 5, 319, 826, 876, 1038
DriI GACNNNNNGTC 2 cut(s) 757, 937
Eam1104I CTCTTC 7 cut(s) 168, 647, 735, 887, 920, 954, 1049
Eam1105I GACNNNNNGTC 2 cut(s) 757, 937
EarI CTCTTC 7 cut(s) 168, 647, 735, 887, 920, 954, 1049
Eco130I CCWWGG 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 924
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 862, 939
Eco57I CTGAAG 3 cut(s) 51, 833, 1073
Eco88I CYCGRG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 862
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 8 cut(s) 130, 416, 526, 610, 772, 778, 844, 1138
FalI AAGNNNNNCTT 1 cut(s) 1156
FatI CATG 8 cut(s) 126, 412, 522, 606, 768, 774, 840, 1134
Fnu4HI GCNGC 5 cut(s) 42, 112, 272, 504, 507
FokI GGATG 3 cut(s) 193, 527, 551
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 5 cut(s) 42, 112, 272, 504, 507
FspBI CTAG 2 cut(s) 801, 969
GluI GCNGC 5 cut(s) 42, 112, 272, 504, 507
GsuI CTGGAG 4 cut(s) 240, 683, 692, 810
HaeIII GGCC 2 cut(s) 599, 873
HapII CCGG 1 cut(s) 511
HgaI GACGC 3 cut(s) 254, 270, 747
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 8 cut(s) 130, 416, 526, 610, 772, 778, 844, 1138
HinfI GANTC 5 cut(s) 130, 455, 626, 674, 764
HpaII CCGG 1 cut(s) 511
HphI GGTGA 2 cut(s) 446, 829
Hpy166II GTNNAC 2 cut(s) 123, 362
Hpy188I TCNGA 7 cut(s) 135, 319, 460, 679, 763, 831, 1047
Hpy188III TCNNGA 4 cut(s) 287, 413, 775, 1129
Hpy8I GTNNAC 2 cut(s) 123, 362
Hpy99I CGWCG 4 cut(s) 82, 248, 264, 407
HpyAV CCTTC 6 cut(s) 69, 238, 778, 808, 1069, 1096
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 2 cut(s) 306, 462
HpyCH4V TGCA 6 cut(s) 542, 649, 731, 840, 868, 1091
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 280, 548, 667, 846
HpyF3I CTNAG 3 cut(s) 267, 708, 845
HpySE526I ACGT 2 cut(s) 306, 462
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 8 cut(s) 130, 416, 526, 610, 772, 778, 844, 1138
Kzo9I GATC 5 cut(s) 5, 319, 826, 876, 1038
LguI GCTCTTC 1 cut(s) 647
LmnI GCTCC 1 cut(s) 88
Lsp1109I GCAGC 5 cut(s) 53, 123, 258, 490, 493
LweI GCATC 4 cut(s) 177, 203, 415, 529
MaeI CTAG 2 cut(s) 801, 969
MaeII ACGT 2 cut(s) 306, 462
MaeIII GTNAC 3 cut(s) 161, 307, 323
MalI GATC 5 cut(s) 7, 321, 828, 878, 1040
MboI GATC 5 cut(s) 5, 319, 826, 876, 1038
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 876
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 4 cut(s) 491, 543, 1009, 1159
MlyI GAGTC 3 cut(s) 635, 683, 773
MmeI TCCRAC 3 cut(s) 510, 867, 1088
MseI TTAA 3 cut(s) 390, 443, 993
MslI CAYNNNNRTG 2 cut(s) 357, 773
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 1 cut(s) 511
MspR9I CCNGG 2 cut(s) 511, 512
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 2 cut(s) 581, 709
MvnI CGCG 1 cut(s) 758
MwoI GCNNNNNNNGC 5 cut(s) 239, 280, 548, 667, 846
NciI CCSGG 2 cut(s) 511, 512
NcoI CCATGG 1 cut(s) 606
NdeII GATC 5 cut(s) 5, 319, 826, 876, 1038
NlaIII CATG 8 cut(s) 130, 416, 526, 610, 772, 778, 844, 1138
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 161, 307
NspI RCATGY 1 cut(s) 844
PaeI GCATGC 1 cut(s) 844
PagI TCATGA 2 cut(s) 412, 774
PciSI GCTCTTC 1 cut(s) 647
PctI GAATGC 2 cut(s) 581, 709
PfeI GAWTC 2 cut(s) 130, 455
PkrI GCNGC 5 cut(s) 43, 113, 273, 505, 508
PleI GAGTC 3 cut(s) 634, 682, 772
PpsI GAGTC 3 cut(s) 634, 682, 772
PpuMI RGGWCCY 1 cut(s) 862
PshAI GACNNNNGTC 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 862
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 3 cut(s) 862, 871, 939
PspPPI RGGWCCY 1 cut(s) 862
PsrI GAACNNNNNNTAC 2 cut(s) 890, 922
PstI CTGCAG 1 cut(s) 870
PsuI RGATCY 1 cut(s) 876
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 5 cut(s) 296, 719, 908, 954, 967
RsaNI GTAC 5 cut(s) 295, 718, 907, 953, 966
RseI CAYNNNNRTG 2 cut(s) 357, 773
SapI GCTCTTC 1 cut(s) 647
SaqAI TTAA 3 cut(s) 390, 443, 993
SatI GCNGC 5 cut(s) 42, 112, 272, 504, 507
Sau3AI GATC 5 cut(s) 5, 319, 826, 876, 1038
Sau96I GGNCC 3 cut(s) 862, 871, 939
SbfI CCTGCAGG 1 cut(s) 870
ScaI AGTACT 2 cut(s) 908, 967
SchI GAGTC 3 cut(s) 635, 683, 773
ScrFI CCNGG 2 cut(s) 511, 512
SdaI CCTGCAGG 1 cut(s) 870
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 4 cut(s) 177, 203, 415, 529
SfcI CTRYAG 1 cut(s) 866
SinI GGWCC 2 cut(s) 862, 939
SmaI CCCGGG 1 cut(s) 512
SmiMI CAYNNNNRTG 2 cut(s) 357, 773
SphI GCATGC 1 cut(s) 844
Sse8387I CCTGCAGG 1 cut(s) 870
Sse9I AATT 4 cut(s) 491, 543, 1009, 1159
SsiI CCGC 2 cut(s) 551, 1152
SspMI CTAG 2 cut(s) 801, 969
StyD4I CCNGG 2 cut(s) 509, 510
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 2 cut(s) 309, 465
TaqI TCGA 2 cut(s) 8, 858
TasI AATT 4 cut(s) 491, 543, 1009, 1159
TatI WGTACW 4 cut(s) 294, 906, 952, 965
TfiI GAWTC 2 cut(s) 130, 455
Tru1I TTAA 3 cut(s) 390, 443, 993
Tru9I TTAA 3 cut(s) 390, 443, 993
TscAI CASTG 2 cut(s) 223, 1093
TseFI GTSAC 2 cut(s) 161, 307
TseI GCWGC 5 cut(s) 41, 111, 271, 503, 506
Tsp45I GTSAC 2 cut(s) 161, 307
TspDTI ATGAA 8 cut(s) 32, 36, 143, 197, 320, 578, 763, 1017
TspGWI ACGGA 2 cut(s) 145, 149
TspMI CCCGGG 1 cut(s) 510
TspRI CASTG 2 cut(s) 223, 1093
VpaK11BI GGWCC 2 cut(s) 862, 939
XapI RAATTY 1 cut(s) 1009
XceI RCATGY 1 cut(s) 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmaI CCCGGG 1 cut(s) 510
XspI CTAG 2 cut(s) 801, 969
ZrmI AGTACT 2 cut(s) 908, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.