pycom15g13570

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002654
Physical Location & Seq
Forward (+)
9228791 .. 9230766
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1128 bp
ATGAAAGGCCGTAAATTGGAGAATGGGATCTCCAATGGTAATCACGTGGATTTCAAAGAATCTAATGGTACTGCTAACGGAAAAGAAAATACTAGTTCCAATCTTGGGGCTTTTGATGTAAATAAGCTTCAGAAACTTAGGTCGAAGGCTGGGAAGAAGACAGAAAAAACAGCTACTGTTGATAGCAAGGGCTCCAAGGCTGAGCCAAAAAAGAAGATAACAAAGAAGAATAGAGTTTGGGATGATAAACCTCCTGAGTCGAAACTGGATTTTACGGATCCTGTGGGTGAGAATGGAGACAACAATATTGAGGTCGTGGCAGCAGATCATGGTGAAAGTATGATGGACAAAGAAGAGGATTTCAGTAGTGAAAGTGAGGAGGAAGAGGAAGAGGATGTTGGGAAGGAAAGCAAGCCTGATAAGCAAAAGAAGGGGTGGTTTTCATCTATGTTCCAGAGTATTGCTGGCAAGGCAAACTTGGAGAGGTCTGACCTGGAACCAGCTTTGAAAGCTCTCAAGGATAGGCTCATGACTAAGAACGTGGCCGAGGAGATTGCTGAGAAGCTTTGTGAATCAGTGGCAGCTAGTCTTGAGGGGAAAAAGCTGGCTTCGTTCACAAGAATATCTTCTACTGTGCAGACTGCGATGGAAGATGCCCTTGTTCGTATTTTAACTCCCAGGCGCTCTATTGATATACTGAGGGATGTGCATGCTGCCAAGGAACAAAGGAAGCCGTATGTCGTCGTTTTTGTTGGTGTCAATGGAGTGGGGAAATCTACCAATTTGGCTAAGGTTGCTTATTGGCTTCAACAGCATAACGTCAGTGTTATGATGGCTGCCTGCGATACATTTCGATCTGGAGCTGTGGAGCAGCTGCGTACTCATGCACGTAGACTCCAGATCCCTATTTTTGAGAAGGGATACGAGAAAGATCCTGCTGTCGTGGCTAAGGAAGCAATCCAGGAGGCCACACACAATGGTTCTGATGTGGTTCTTGTTGATACTGCTGGTCGTATGCAGGATAATGAACCATTGATGAGGGCACTGTCAAAGCTTGTCAATCTTAACAACCCAGATCGATCTTGTCTTGTTCGTTGGAGAGGCACTGGTTGGGAACGATGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

376

Amino Acids

41.6

Weight (kDa)

8.11

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP-alpha_N PF04086 23 - 128 1.2e-10 Signal recognition particle, alpha subunit, N-terminal
SRP54_N PF02881 147 - 215 2.3e-09 SRP54-type protein, helical bundle domain
AAA_22 PF13401 244 - 364 2.4e-07 AAA domain
SRP54 PF00448 246 - 364 1.6e-38 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 892
AclWI GGATC 5 cut(s) 35, 272, 285, 895, 926
AcoI YGGCCR 1 cut(s) 543
AcuI CTGAAG 1 cut(s) 113
AcvI CACGTG 1 cut(s) 46
AfaI GTAC 2 cut(s) 70, 880
AfiI CCNNNNNNNGG 2 cut(s) 16, 105
AgsI TTSAA 3 cut(s) 55, 508, 809
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 3 cut(s) 492, 677, 960
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 5 cut(s) 35, 272, 285, 895, 926
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 3 cut(s) 7, 543, 966
ApeKI GCWGC 6 cut(s) 320, 581, 713, 836, 871, 874
Asp700I GAANNNNTTC 1 cut(s) 625
AspLEI GCGC 1 cut(s) 684
AsuHPI GGTGA 2 cut(s) 299, 344
BaeGI GKGCMC 1 cut(s) 1045
BamHI GGATCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 194
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BbrPI CACGTG 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 6 cut(s) 332, 593, 700, 823, 861, 883
BccI CCATC 3 cut(s) 337, 640, 826
BceAI ACGGC 1 cut(s) 718
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 3 cut(s) 494, 679, 962
BciVI GTATCC 1 cut(s) 914
BcoDI GTCTC 1 cut(s) 291
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 2 cut(s) 93, 585
BfoI RGCGCY 1 cut(s) 685
BfuI GTATCC 1 cut(s) 914
BisI GCNGC 6 cut(s) 321, 582, 714, 837, 872, 875
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 6 cut(s) 322, 583, 715, 838, 873, 876
Bme1390I CCNGG 3 cut(s) 494, 679, 962
BmiI GGNNCC 3 cut(s) 193, 279, 498
BmrFI CCNGG 3 cut(s) 494, 679, 962
BmsI GCATC 2 cut(s) 643, 1109
BpiI GAAGAC 1 cut(s) 164
BpmI CTGGAG 2 cut(s) 879, 881
Bpu10I CCTNAGC 2 cut(s) 789, 948
Bpu1102I GCTNAGC 1 cut(s) 201
BpuEI CTTGAG 2 cut(s) 500, 611
Bsa29I ATCGAT 1 cut(s) 1078
BsaAI YACGTR 2 cut(s) 46, 890
BsaJI CCNNGG 4 cut(s) 195, 546, 677, 717
BsaXI ACNNNNNCTCC 2 cut(s) 879, 909
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 105
Bse1I ACTGG 2 cut(s) 270, 1111
BseBI CCWGG 3 cut(s) 494, 679, 962
BseCI ATCGAT 1 cut(s) 1078
BseDI CCNNGG 4 cut(s) 195, 546, 677, 717
BseGI GGATG 3 cut(s) 247, 400, 709
BseLI CCNNNNNNNGG 2 cut(s) 16, 105
BseMII CTCAG 4 cut(s) 192, 246, 549, 689
BseNI ACTGG 2 cut(s) 270, 1111
BseRI GAGGAG 2 cut(s) 392, 563
BseSI GKGCMC 1 cut(s) 1045
BseXI GCAGC 6 cut(s) 332, 593, 700, 823, 861, 883
BseYI CCCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 656
BshFI GGCC 3 cut(s) 9, 545, 968
BshVI ATCGAT 1 cut(s) 1078
BslI CCNNNNNNNGG 2 cut(s) 16, 105
BsmAI GTCTC 1 cut(s) 291
BsnI GGCC 3 cut(s) 9, 545, 968
Bsp1286I GDGCHC 2 cut(s) 194, 1045
Bsp143I GATC 8 cut(s) 27, 277, 325, 854, 900, 931, 1075, 1079
Bsp1720I GCTNAGC 1 cut(s) 201
BspANI GGCC 3 cut(s) 9, 545, 968
BspCNI CTCAG 4 cut(s) 193, 247, 550, 690
BspDI ATCGAT 1 cut(s) 1078
BspHI TCATGA 1 cut(s) 528
BspLI GGNNCC 3 cut(s) 193, 279, 498
BspPI GGATC 5 cut(s) 35, 272, 285, 895, 926
BsrI ACTGG 2 cut(s) 270, 1111
BssECI CCNNGG 4 cut(s) 195, 546, 677, 717
BssMI GATC 8 cut(s) 27, 277, 325, 854, 900, 931, 1075, 1079
BssT1I CCWWGG 2 cut(s) 195, 717
Bst2UI CCWGG 3 cut(s) 494, 679, 962
Bst4CI ACNGT 3 cut(s) 178, 634, 1047
Bst6I CTCTTC 3 cut(s) 348, 378, 384
BstBAI YACGTR 2 cut(s) 46, 890
BstC8I GCNNGC 5 cut(s) 413, 466, 606, 711, 841
BstDEI CTNAG 8 cut(s) 137, 201, 255, 534, 558, 698, 789, 948
BstF5I GGATG 3 cut(s) 247, 400, 709
BstH2I RGCGCY 1 cut(s) 685
BstHHI GCGC 1 cut(s) 684
BstKTI GATC 8 cut(s) 30, 280, 328, 857, 903, 934, 1078, 1082
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 8 cut(s) 27, 277, 325, 854, 900, 931, 1075, 1079
BstMWI GCNNNNNNNGC 7 cut(s) 421, 470, 509, 794, 811, 944, 953
BstNI CCWGG 3 cut(s) 494, 679, 962
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 3 cut(s) 492, 677, 960
BstSLI GKGCMC 1 cut(s) 1045
BstV1I GCAGC 6 cut(s) 332, 593, 700, 823, 861, 883
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 4 cut(s) 27, 277, 900, 931
BstYI RGATCY 4 cut(s) 27, 277, 900, 931
Bsu15I ATCGAT 1 cut(s) 1078
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 3 cut(s) 9, 545, 968
BsuTUI ATCGAT 1 cut(s) 1078
BtgZI GCGATG 1 cut(s) 659
BtsCI GGATG 3 cut(s) 247, 400, 709
BtsIMutI CAGTG 4 cut(s) 582, 829, 1043, 1104
Cac8I GCNNGC 5 cut(s) 413, 466, 606, 711, 841
CaiI CAGNNNCTG 1 cut(s) 176
CciI TCATGA 1 cut(s) 528
CfoI GCGC 1 cut(s) 684
ClaI ATCGAT 1 cut(s) 1078
Csp6I GTAC 2 cut(s) 69, 879
CviAII CATG 4 cut(s) 329, 529, 710, 884
CviQI GTAC 2 cut(s) 69, 879
DdeI CTNAG 8 cut(s) 137, 201, 255, 534, 558, 698, 789, 948
DpnI GATC 8 cut(s) 29, 279, 327, 856, 902, 933, 1077, 1081
DpnII GATC 8 cut(s) 27, 277, 325, 854, 900, 931, 1075, 1079
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 3 cut(s) 348, 378, 384
EarI CTCTTC 3 cut(s) 348, 378, 384
Eco130I CCWWGG 2 cut(s) 195, 717
Eco24I GRGCYC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 113
Eco72I CACGTG 1 cut(s) 46
EcoRII CCWGG 3 cut(s) 492, 677, 960
EcoT14I CCWWGG 2 cut(s) 195, 717
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 2 cut(s) 195, 717
FaeI CATG 4 cut(s) 332, 532, 713, 887
FalI AAGNNNNNCTT 6 cut(s) 461, 493, 610, 642, 642, 674
FatI CATG 4 cut(s) 328, 528, 709, 883
FblI GTMKAC 1 cut(s) 892
Fnu4HI GCNGC 6 cut(s) 321, 582, 714, 837, 872, 875
FokI GGATG 3 cut(s) 254, 407, 716
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 6 cut(s) 321, 582, 714, 837, 872, 875
FspBI CTAG 2 cut(s) 93, 585
GlaI GCGC 1 cut(s) 683
GluI GCNGC 6 cut(s) 321, 582, 714, 837, 872, 875
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 879, 881
HaeII RGCGCY 1 cut(s) 685
HaeIII GGCC 3 cut(s) 9, 545, 968
HhaI GCGC 1 cut(s) 684
Hin1II CATG 4 cut(s) 332, 532, 713, 887
Hin6I GCGC 1 cut(s) 682
HinP1I GCGC 1 cut(s) 682
HindIII AAGCTT 3 cut(s) 125, 563, 1052
HinfI GANTC 4 cut(s) 59, 257, 572, 894
HphI GGTGA 2 cut(s) 299, 344
Hpy166II GTNNAC 2 cut(s) 615, 893
Hpy188I TCNGA 3 cut(s) 132, 490, 985
Hpy188III TCNNGA 6 cut(s) 254, 454, 529, 590, 858, 898
Hpy8I GTNNAC 2 cut(s) 615, 893
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 4 cut(s) 139, 397, 424, 910
HpyCH4III ACNGT 3 cut(s) 178, 634, 1047
HpyCH4IV ACGT 4 cut(s) 45, 540, 819, 889
HpyCH4V TGCA 4 cut(s) 637, 709, 887, 1018
HpyF10VI GCNNNNNNNGC 7 cut(s) 421, 470, 509, 794, 811, 944, 953
HpyF3I CTNAG 8 cut(s) 137, 201, 255, 534, 558, 698, 789, 948
HpySE526I ACGT 4 cut(s) 45, 540, 819, 889
Hsp92II CATG 4 cut(s) 332, 532, 713, 887
HspAI GCGC 1 cut(s) 682
Kzo9I GATC 8 cut(s) 27, 277, 325, 854, 900, 931, 1075, 1079
LmnI GCTCC 3 cut(s) 197, 860, 868
Lsp1109I GCAGC 6 cut(s) 332, 593, 700, 823, 861, 883
LweI GCATC 2 cut(s) 643, 1109
MaeI CTAG 2 cut(s) 93, 585
MaeII ACGT 4 cut(s) 45, 540, 819, 889
MalI GATC 8 cut(s) 29, 279, 327, 856, 902, 933, 1077, 1081
MboI GATC 8 cut(s) 27, 277, 325, 854, 900, 931, 1075, 1079
MboII GAAGA 9 cut(s) 166, 169, 226, 238, 365, 395, 401, 618, 662
MflI RGATCY 4 cut(s) 27, 277, 900, 931
MhlI GDGCHC 2 cut(s) 194, 1045
MluCI AATT 2 cut(s) 14, 781
MlyI GAGTC 2 cut(s) 266, 888
MmeI TCCRAC 1 cut(s) 1076
MroXI GAANNNNTTC 1 cut(s) 625
MseI TTAA 2 cut(s) 671, 1065
MspA1I CMGCKG 1 cut(s) 874
MspR9I CCNGG 3 cut(s) 494, 679, 962
MvaI CCWGG 3 cut(s) 494, 679, 962
MwoI GCNNNNNNNGC 7 cut(s) 421, 470, 509, 794, 811, 944, 953
NdeII GATC 8 cut(s) 27, 277, 325, 854, 900, 931, 1075, 1079
NlaIII CATG 4 cut(s) 332, 532, 713, 887
NlaIV GGNNCC 3 cut(s) 193, 279, 498
NmeAIII GCCGAG 1 cut(s) 571
NspI RCATGY 1 cut(s) 713
PaeI GCATGC 1 cut(s) 713
PagI TCATGA 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 625
PfeI GAWTC 2 cut(s) 59, 572
PfoI TCCNGGA 1 cut(s) 960
PkrI GCNGC 6 cut(s) 322, 583, 715, 838, 873, 876
PleI GAGTC 2 cut(s) 265, 888
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
PpsI GAGTC 2 cut(s) 265, 888
Ppu21I YACGTR 2 cut(s) 46, 890
Psp6I CCWGG 3 cut(s) 492, 677, 960
PspCI CACGTG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 3 cut(s) 492, 677, 960
PspN4I GGNNCC 3 cut(s) 193, 279, 498
PstNI CAGNNNCTG 1 cut(s) 176
PsuI RGATCY 4 cut(s) 27, 277, 900, 931
PvuII CAGCTG 1 cut(s) 874
RsaI GTAC 2 cut(s) 70, 880
RsaNI GTAC 2 cut(s) 69, 879
SaqAI TTAA 2 cut(s) 671, 1065
SatI GCNGC 6 cut(s) 321, 582, 714, 837, 872, 875
Sau3AI GATC 8 cut(s) 27, 277, 325, 854, 900, 931, 1075, 1079
SchI GAGTC 2 cut(s) 266, 888
ScrFI CCNGG 3 cut(s) 494, 679, 962
SduI GDGCHC 2 cut(s) 194, 1045
SfaNI GCATC 2 cut(s) 643, 1109
SmlI CTYRAG 2 cut(s) 515, 590
SmoI CTYRAG 2 cut(s) 515, 590
SpeI ACTAGT 1 cut(s) 92
SphI GCATGC 1 cut(s) 713
Sse9I AATT 2 cut(s) 14, 781
SspI AATATT 1 cut(s) 307
SspMI CTAG 2 cut(s) 93, 585
StyD4I CCNGG 3 cut(s) 492, 677, 960
StyI CCWWGG 2 cut(s) 195, 717
TaaI ACNGT 3 cut(s) 178, 634, 1047
TaiI ACGT 4 cut(s) 48, 543, 822, 892
TaqI TCGA 4 cut(s) 143, 260, 853, 1078
TasI AATT 2 cut(s) 14, 781
TfiI GAWTC 2 cut(s) 59, 572
Tru1I TTAA 2 cut(s) 671, 1065
Tru9I TTAA 2 cut(s) 671, 1065
TscAI CASTG 4 cut(s) 582, 829, 1050, 1111
TseI GCWGC 6 cut(s) 320, 581, 713, 836, 871, 874
TspDTI ATGAA 3 cut(s) 17, 432, 1041
TspGWI ACGGA 2 cut(s) 93, 290
TspRI CASTG 4 cut(s) 582, 829, 1050, 1111
XceI RCATGY 1 cut(s) 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 892
XmnI GAANNNNTTC 1 cut(s) 625
XspI CTAG 2 cut(s) 93, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.