Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

13487291 .. 13488017

Gene Structure 727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTATTATCAAGCAATCTTCTTTGTGAAATTAAAACAACTAGCTAGTACTAATTTAAGGCCCCTCCTCCTCCTCTCCAAATCCTCTTGCCACTTTCACCAAAAACCCAAAACAATGGGTTACAAGCTCTACGCAATACAAAGCCCCATTTCACAGCCGCCACCGCCTCCTCCGTCACCGAAAACCAACTTACCCATGCTGTATTATGGCCTCATAGTCTTCGGAACAGCCGGCATAATCCTAGCCATGTACAACCTTATCTTCATCAAATGGACTTCGAGGCGCCATGGCCAGTCTCCGGCGTCAAGACCATCAAACAGTTTGGTTGATCTCTCAAGAACAAGGAGGAGTAGGAGCTTTGAGAACTTGGGCAGCTTCAGGTACCAGAAGAAAGAGGGATCAAACGCAAAAGATGAAAATTCTGTTGAATGTGCTGTTTGTTTGTCAGTTTTTGAGGATGGAGAAGATATAAGAAAGCTGCCTACTTGCAAGCACTCTTTTCATGCTCCTTGCATAGACATGTGGCTCTACTCTCACTCTGAGTGCCCGCTCTGTCGCACGCCCGTGCCCGTCAGCTCATGGTGTCATCCGCAGTTGACGACCACGCCGGAGGACAATTCCAGAGAAGGCCTGCTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

214

Amino Acids

24.15

Weight (kDa)

9.3

Isoelectric Point (pI)

67.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	143 - 186	5.3e-13	Ring finger domain
zf-RING_11	PF17123	143 - 172	6.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	143 - 185	1.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	144 - 185	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	151 - 186	1.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	381
AccB1I	GGYRCC	2 cut(s)	282, 381
AccBSI	CCGCTC	1 cut(s)	550
AciI	CCGC	4 cut(s)	158, 164, 548, 590
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	361
AcyI	GRCGYC	2 cut(s)	283, 302
AfaI	GTAC	3 cut(s)	49, 251, 383
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	1 cut(s)	428
AleI	CACNNNNGTG	1 cut(s)	563
AluBI	AGCT	6 cut(s)	44, 127, 357, 375, 478, 576
AluI	AGCT	6 cut(s)	44, 127, 357, 375, 478, 576
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	4 cut(s)	59, 208, 289, 628
ApeKI	GCWGC	2 cut(s)	372, 478
ApoI	RAATTY	1 cut(s)	418
Asp718I	GGTACC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	89, 168
BaeGI	GKGCMC	2 cut(s)	548, 570
BalI	TGGCCA	1 cut(s)	291
BanI	GGYRCC	2 cut(s)	282, 381
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	384, 465
BccI	CCATC	2 cut(s)	319, 452
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	4 cut(s)	41, 45, 242, 635
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	3 cut(s)	158, 373, 479
BlsI	GCNGC	3 cut(s)	159, 374, 480
BmcAI	AGTACT	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	3 cut(s)	62, 284, 383
BpiI	GAAGAC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	283, 302
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	2 cut(s)	463, 586
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	5 cut(s)	56, 59, 62, 159, 361
BseSI	GKGCMC	2 cut(s)	548, 570
BseXI	GCAGC	2 cut(s)	384, 465
BshFI	GGCC	4 cut(s)	61, 210, 291, 630
BshNI	GGYRCC	2 cut(s)	282, 381
BsiSI	CCGG	3 cut(s)	231, 299, 608
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	4 cut(s)	61, 210, 291, 630
Bsp1286I	GDGCHC	2 cut(s)	548, 570
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	328, 398
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	4 cut(s)	158, 164, 548, 590
BspANI	GGCC	4 cut(s)	61, 210, 291, 630
BspCNI	CTCAG	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	62, 284, 383
BspPI	GGATC	1 cut(s)	406
BspT107I	GGYRCC	2 cut(s)	282, 381
BsrBI	CCGCTC	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	328, 398
BssNI	GRCGYC	2 cut(s)	283, 302
BssT1I	CCWWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	320
BstACI	GRCGYC	2 cut(s)	283, 302
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	5 cut(s)	232, 491, 548, 560, 632
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	463, 586
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	331, 401
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	2 cut(s)	328, 398
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	523
BstSLI	GKGCMC	2 cut(s)	548, 570
BstV1I	GCAGC	2 cut(s)	384, 465
BstV2I	GAAGAC	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuRI	GGCC	4 cut(s)	61, 210, 291, 630
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	463, 586
Cac8I	GCNNGC	5 cut(s)	232, 491, 548, 560, 632
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	3 cut(s)	48, 250, 382
CviAII	CATG	6 cut(s)	196, 247, 287, 503, 520, 579
CviQI	GTAC	3 cut(s)	48, 250, 382
DdeI	CTNAG	1 cut(s)	540
DinI	GGCGCC	1 cut(s)	284
DpnI	GATC	2 cut(s)	330, 400
DpnII	GATC	2 cut(s)	328, 398
EaeI	YGGCCR	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	286
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	6 cut(s)	199, 250, 290, 506, 523, 582
FatI	CATG	6 cut(s)	195, 246, 286, 502, 519, 578
FauI	CCCGC	1 cut(s)	555
Fnu4HI	GCNGC	3 cut(s)	158, 373, 479
FokI	GGATG	2 cut(s)	470, 573
Fsp4HI	GCNGC	3 cut(s)	158, 373, 479
FspBI	CTAG	4 cut(s)	41, 45, 242, 635
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	3 cut(s)	158, 373, 479
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	4 cut(s)	61, 210, 291, 630
HapII	CCGG	3 cut(s)	231, 299, 608
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	2 cut(s)	283, 302
Hin1II	CATG	6 cut(s)	199, 250, 290, 506, 523, 582
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HpaII	CCGG	3 cut(s)	231, 299, 608
HphI	GGTGA	2 cut(s)	89, 168
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	3 cut(s)	224, 541, 641
Hpy188III	TCNNGA	3 cut(s)	306, 336, 621
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	1 cut(s)	620
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	489, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	540
Hsp92I	GRCGYC	2 cut(s)	283, 302
Hsp92II	CATG	6 cut(s)	199, 250, 290, 506, 523, 582
HspAI	GCGC	1 cut(s)	283
KasI	GGCGCC	1 cut(s)	282
KpnI	GGTACC	1 cut(s)	385
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	328, 398
LmnI	GCTCC	2 cut(s)	354, 511
LpnPI	CCDG	7 cut(s)	244, 305, 312, 364, 398, 621, 634
Lsp1109I	GCAGC	2 cut(s)	384, 465
MaeI	CTAG	4 cut(s)	41, 45, 242, 635
MaeIII	GTNAC	2 cut(s)	119, 174
MalI	GATC	2 cut(s)	330, 400
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	2 cut(s)	328, 398
MboII	GAAGA	5 cut(s)	10, 211, 253, 400, 476
MhlI	GDGCHC	2 cut(s)	548, 570
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	4 cut(s)	29, 52, 418, 616
MluNI	TGGCCA	1 cut(s)	291
Mly113I	GGCGCC	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	291
MroNI	GCCGGC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	2 cut(s)	32, 56
MslI	CAYNNNNRTG	2 cut(s)	518, 563
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	3 cut(s)	231, 299, 608
MwoI	GCNNNNNNNGC	1 cut(s)	163
NaeI	GCCGGC	1 cut(s)	232
NarI	GGCGCC	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	2 cut(s)	328, 398
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	6 cut(s)	199, 250, 290, 506, 523, 582
NlaIV	GGNNCC	3 cut(s)	62, 284, 383
NmuCI	GTSAC	1 cut(s)	174
NspI	RCATGY	1 cut(s)	523
OliI	CACNNNNGTG	1 cut(s)	563
PceI	AGGCCT	1 cut(s)	630
PciI	ACATGT	1 cut(s)	519
PdiI	GCCGGC	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	159, 374, 480
PluTI	GGCGCC	1 cut(s)	286
PscI	ACATGT	1 cut(s)	519
PspN4I	GGNNCC	3 cut(s)	62, 284, 383
PspPI	GGNCC	1 cut(s)	60
RsaI	GTAC	3 cut(s)	49, 251, 383
RsaNI	GTAC	3 cut(s)	48, 250, 382
RseI	CAYNNNNRTG	2 cut(s)	518, 563
SaqAI	TTAA	2 cut(s)	32, 56
SatI	GCNGC	3 cut(s)	158, 373, 479
Sau3AI	GATC	2 cut(s)	328, 398
Sau96I	GGNCC	1 cut(s)	60
ScaI	AGTACT	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	548, 570
SetI	ASST	8 cut(s)	46, 129, 258, 359, 377, 383, 480, 578
SfoI	GGCGCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	518, 563
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	29, 52, 418, 616
SseBI	AGGCCT	1 cut(s)	630
SsiI	CCGC	4 cut(s)	158, 164, 548, 590
SspDI	GGCGCC	1 cut(s)	282
SspMI	CTAG	4 cut(s)	41, 45, 242, 635
StuI	AGGCCT	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	278
TasI	AATT	4 cut(s)	29, 52, 418, 616
TatI	WGTACW	2 cut(s)	47, 249
TauI	GCSGC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	32, 56
Tru9I	TTAA	2 cut(s)	32, 56
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	2 cut(s)	372, 478
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	3 cut(s)	253, 429, 491
TspGWI	ACGGA	1 cut(s)	162
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	523
XspI	CTAG	4 cut(s)	41, 45, 242, 635
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.