pycom15g21500

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003319
Physical Location & Seq
Reverse (-)
15430958 .. 15431868
911 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
ATGATTCCCCCAAATTTGACCAAAATCCTCATGGCAGCTCCATTTTCTCACCACCTCACCTTCCTTCTTCTAATCATTACCAGAGGGGTCTCAGCAGCCACATTCACGTTCACAAATAAGTGTGACTTCACAGTATGGCCGGGAATTCTAGCCAGCTCCGGTAGCGAAAAGCTCGACAGCACCGGCTTCGAGCTCCCCAAAGGCAGCTCCCGCGTTTTCCAGGCCCCTACTGGCTGGTCCGGTCGGTTCTGGGGCCGAACTGGCTGCAGCTTCGACGGTTCGGGCCGCGGTTCGTGTTCAACCGGGGACTGCGGCTCAGGCGAGCTCGAGTGCAACGGAGCTGGAGCAGCCCCGCCAGCCACTCTAGCCGAGTTCACACTCGGTTCGGGTTCTCAAGACTTCTATGATGTCAGCCTTGTTGACGGTTATAACTTACCTATGATCGTCGAGGGGAGTGCGGGATCGGGTGCGTGCGCGTCCACCGGGTGCGTTACGGACCTCAACCGTAGGTGCCCTGCTGAGCTCAAAGTCGAAGGTGGCGGCGCGTGCAAGAGCGCGTGTGACGCGTTTGGAAGTCCGGAGTATTGTTGCAACGGCGCGTATGGTTCACCGTCTACATGCAAGCCGTCCATGTACTCACAGTTGTTTAAGTCCGCGTGTCCCAAGTCGTACAGCTATGCTTACGATGACGCCTCAAGTACATTTACGTGTACGAATGCTGATTATACGATCACATTTTGCGCTTCTCTCACTTCGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

254

Amino Acids

26.33

Weight (kDa)

5.17

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 39 - 247 1.6e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 510
AccI GTMKAC 1 cut(s) 614
AccII CGCG 8 cut(s) 213, 288, 476, 545, 557, 566, 599, 656
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 8 cut(s) 211, 286, 288, 312, 353, 458, 540, 654
AclWI GGATC 1 cut(s) 469
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 2 cut(s) 13, 144
AcyI GRCGYC 1 cut(s) 690
AdeI CACNNNGTG 1 cut(s) 486
AfaI GTAC 4 cut(s) 635, 671, 700, 712
AflIII ACRYGT 2 cut(s) 564, 707
AgsI TTSAA 1 cut(s) 300
AjnI CCWGG 1 cut(s) 219
Alw21I GWGCWC 3 cut(s) 195, 327, 525
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 469
Ama87I CYCGRG 1 cut(s) 326
Aor13HI TCCGGA 1 cut(s) 577
AoxI GGCC 4 cut(s) 137, 222, 253, 283
ApeKI GCWGC 6 cut(s) 35, 95, 204, 264, 267, 347
ApoI RAATTY 2 cut(s) 13, 144
AspLEI GCGC 5 cut(s) 476, 545, 557, 599, 743
AspS9I GGNCC 5 cut(s) 223, 237, 253, 283, 496
AsuC2I CCSGG 3 cut(s) 141, 304, 484
AsuHPI GGTGA 3 cut(s) 41, 49, 600
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 2 cut(s) 237, 496
BaeGI GKGCMC 1 cut(s) 515
BanI GGYRCC 1 cut(s) 510
BanII GRGCYC 3 cut(s) 195, 327, 525
Bbv12I GWGCWC 3 cut(s) 195, 327, 525
BbvI GCAGC 6 cut(s) 47, 107, 216, 251, 279, 359
BceAI ACGGC 2 cut(s) 610, 610
BcgI CGANNNNNNTGC 6 cut(s) 169, 203, 246, 280, 437, 471
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 3 cut(s) 141, 304, 484
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 2 cut(s) 149, 365
BfmI CTRYAG 1 cut(s) 265
BglI GCCNNNNNGGC 1 cut(s) 261
BisI GCNGC 9 cut(s) 36, 96, 205, 265, 268, 286, 313, 348, 541
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 9 cut(s) 37, 97, 206, 266, 269, 287, 314, 349, 542
Bme1390I CCNGG 4 cut(s) 141, 221, 304, 484
Bme18I GGWCC 2 cut(s) 237, 496
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 5 cut(s) 223, 237, 253, 283, 496
BmiI GGNNCC 3 cut(s) 225, 254, 512
BmrFI CCNGG 4 cut(s) 141, 221, 304, 484
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 316
Bpu1102I GCTNAGC 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 378, 679
BpuMI CCSGG 3 cut(s) 141, 304, 484
BsaAI YACGTR 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 286, 303
BsaWI WCCGGW 3 cut(s) 158, 239, 577
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 235, 265
BseAI TCCGGA 1 cut(s) 577
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 286, 303
BseMII CTCAG 3 cut(s) 105, 330, 510
BseNI ACTGG 2 cut(s) 235, 265
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 6 cut(s) 47, 107, 216, 251, 279, 359
Bsh1236I CGCG 8 cut(s) 213, 288, 476, 545, 557, 566, 599, 656
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 4 cut(s) 139, 224, 255, 285
BshNI GGYRCC 1 cut(s) 510
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 3 cut(s) 195, 327, 525
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 7 cut(s) 140, 159, 183, 240, 303, 483, 578
BslFI GGGAC 2 cut(s) 320, 645
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 320, 645
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 4 cut(s) 139, 224, 255, 285
Bso31I GGTCTC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 4 cut(s) 195, 327, 515, 525
Bsp13I TCCGGA 1 cut(s) 577
Bsp143I GATC 3 cut(s) 441, 461, 729
Bsp1720I GCTNAGC 1 cut(s) 519
BspACI CCGC 8 cut(s) 211, 286, 288, 312, 353, 458, 540, 654
BspANI GGCC 4 cut(s) 139, 224, 255, 285
BspCNI CTCAG 3 cut(s) 104, 329, 511
BspEI TCCGGA 1 cut(s) 577
BspFNI CGCG 8 cut(s) 213, 288, 476, 545, 557, 566, 599, 656
BspLI GGNNCC 3 cut(s) 225, 254, 512
BspMAI CTGCAG 1 cut(s) 269
BspPI GGATC 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 510
BspTNI GGTCTC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 2 cut(s) 235, 265
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 286, 303
BssMI GATC 3 cut(s) 441, 461, 729
BssNI GRCGYC 1 cut(s) 690
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 6 cut(s) 133, 278, 425, 506, 612, 642
BstACI GRCGYC 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 708
BstC8I GCNNGC 6 cut(s) 154, 323, 357, 472, 547, 623
BstDEI CTNAG 3 cut(s) 91, 316, 519
BstDSI CCRYGG 1 cut(s) 286
BstFNI CGCG 8 cut(s) 213, 288, 476, 545, 557, 566, 599, 656
BstHHI GCGC 5 cut(s) 476, 545, 557, 599, 743
BstKTI GATC 3 cut(s) 444, 464, 732
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 3 cut(s) 441, 461, 729
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 9 cut(s) 162, 210, 261, 318, 347, 356, 365, 546, 563
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 4 cut(s) 139, 219, 302, 482
BstSFI CTRYAG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 515
BstUI CGCG 8 cut(s) 213, 288, 476, 545, 557, 566, 599, 656
BstV1I GCAGC 6 cut(s) 47, 107, 216, 251, 279, 359
BsuRI GGCC 4 cut(s) 139, 224, 255, 285
BtgI CCRYGG 1 cut(s) 286
Cac8I GCNNGC 6 cut(s) 154, 323, 357, 472, 547, 623
CfoI GCGC 5 cut(s) 476, 545, 557, 599, 743
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 223, 237, 253, 283, 496
Cfr42I CCGCGG 1 cut(s) 289
CseI GACGC 3 cut(s) 465, 572, 698
Csp6I GTAC 4 cut(s) 634, 670, 699, 711
CviAII CATG 3 cut(s) 31, 618, 631
CviQI GTAC 4 cut(s) 634, 670, 699, 711
DdeI CTNAG 3 cut(s) 91, 316, 519
DpnI GATC 3 cut(s) 443, 463, 731
DpnII GATC 3 cut(s) 441, 461, 729
DraIII CACNNNGTG 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 137
Ecl136II GAGCTC 3 cut(s) 193, 325, 523
Eco24I GRGCYC 3 cut(s) 195, 327, 525
Eco31I GGTCTC 1 cut(s) 94
Eco47I GGWCC 2 cut(s) 237, 496
Eco53kI GAGCTC 3 cut(s) 193, 325, 523
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 3 cut(s) 193, 325, 523
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 219
EcoT38I GRGCYC 3 cut(s) 195, 327, 525
FaeI CATG 3 cut(s) 34, 621, 634
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 2 cut(s) 320, 645
FatI CATG 3 cut(s) 30, 617, 630
FauI CCCGC 3 cut(s) 218, 360, 451
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 9 cut(s) 36, 96, 205, 265, 268, 286, 313, 348, 541
FriOI GRGCYC 3 cut(s) 195, 327, 525
Fsp4HI GCNGC 9 cut(s) 36, 96, 205, 265, 268, 286, 313, 348, 541
FspBI CTAG 2 cut(s) 149, 365
GlaI GCGC 5 cut(s) 475, 544, 556, 598, 742
GluI GCNGC 9 cut(s) 36, 96, 205, 265, 268, 286, 313, 348, 541
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 4 cut(s) 139, 224, 255, 285
HapII CCGG 7 cut(s) 140, 159, 183, 240, 303, 483, 578
HgaI GACGC 3 cut(s) 465, 572, 698
HhaI GCGC 5 cut(s) 476, 545, 557, 599, 743
Hin1I GRCGYC 1 cut(s) 690
Hin1II CATG 3 cut(s) 34, 621, 634
Hin6I GCGC 5 cut(s) 474, 543, 555, 597, 741
HinP1I GCGC 5 cut(s) 474, 543, 555, 597, 741
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 1 cut(s) 4
HpaII CCGG 7 cut(s) 140, 159, 183, 240, 303, 483, 578
HphI GGTGA 3 cut(s) 41, 49, 600
Hpy166II GTNNAC 7 cut(s) 111, 375, 421, 480, 608, 615, 711
Hpy188III TCNNGA 2 cut(s) 395, 578
Hpy8I GTNNAC 7 cut(s) 111, 375, 421, 480, 608, 615, 711
Hpy99I CGWCG 2 cut(s) 278, 449
HpyAV CCTTC 3 cut(s) 70, 74, 527
HpyCH4III ACNGT 6 cut(s) 133, 278, 425, 506, 612, 642
HpyCH4IV ACGT 2 cut(s) 107, 707
HpyCH4V TGCA 5 cut(s) 267, 333, 549, 591, 621
HpyF10VI GCNNNNNNNGC 9 cut(s) 162, 210, 261, 318, 347, 356, 365, 546, 563
HpyF3I CTNAG 3 cut(s) 91, 316, 519
HpySE526I ACGT 2 cut(s) 107, 707
Hsp92I GRCGYC 1 cut(s) 690
Hsp92II CATG 3 cut(s) 34, 621, 634
HspAI GCGC 5 cut(s) 474, 543, 555, 597, 741
Kpn2I TCCGGA 1 cut(s) 577
KspI CCGCGG 1 cut(s) 289
Kzo9I GATC 3 cut(s) 441, 461, 729
LmnI GCTCC 6 cut(s) 43, 161, 198, 212, 338, 344
Lsp1109I GCAGC 6 cut(s) 47, 107, 216, 251, 279, 359
MaeI CTAG 2 cut(s) 149, 365
MaeII ACGT 2 cut(s) 107, 707
MaeIII GTNAC 3 cut(s) 122, 490, 560
MalI GATC 3 cut(s) 443, 463, 731
MboI GATC 3 cut(s) 441, 461, 729
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 4 cut(s) 195, 327, 515, 525
MluCI AATT 2 cut(s) 13, 144
MluI ACGCGT 1 cut(s) 564
MnlI CCTC 7 cut(s) 38, 65, 77, 442, 509, 703, 750
MroI TCCGGA 1 cut(s) 577
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 706
MspA1I CMGCKG 1 cut(s) 288
MspI CCGG 7 cut(s) 140, 159, 183, 240, 303, 483, 578
MspR9I CCNGG 4 cut(s) 141, 221, 304, 484
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 8 cut(s) 213, 288, 476, 545, 557, 566, 599, 656
MwoI GCNNNNNNNGC 9 cut(s) 162, 210, 261, 318, 347, 356, 365, 546, 563
NciI CCSGG 3 cut(s) 141, 304, 484
NdeII GATC 3 cut(s) 441, 461, 729
NlaIII CATG 3 cut(s) 34, 621, 634
NlaIV GGNNCC 3 cut(s) 225, 254, 512
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 2 cut(s) 122, 560
NspI RCATGY 1 cut(s) 621
PaeR7I CTCGAG 1 cut(s) 326
PctI GAATGC 1 cut(s) 721
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 9 cut(s) 37, 97, 206, 266, 269, 287, 314, 349, 542
Ppu21I YACGTR 1 cut(s) 708
PsiI TTATAA 1 cut(s) 429
Psp124BI GAGCTC 3 cut(s) 195, 327, 525
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 225, 254, 512
PspPI GGNCC 5 cut(s) 223, 237, 253, 283, 496
PspXI VCTCGAGB 1 cut(s) 326
PstI CTGCAG 1 cut(s) 269
RsaI GTAC 4 cut(s) 635, 671, 700, 712
RsaNI GTAC 4 cut(s) 634, 670, 699, 711
RseI CAYNNNNRTG 1 cut(s) 706
SacI GAGCTC 3 cut(s) 195, 327, 525
SacII CCGCGG 1 cut(s) 289
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 9 cut(s) 36, 96, 205, 265, 268, 286, 313, 348, 541
Sau3AI GATC 3 cut(s) 441, 461, 729
Sau96I GGNCC 5 cut(s) 223, 237, 253, 283, 496
ScrFI CCNGG 4 cut(s) 141, 221, 304, 484
SduI GDGCHC 4 cut(s) 195, 327, 515, 525
SfcI CTRYAG 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 326
Sfr303I CCGCGG 1 cut(s) 289
SgrBI CCGCGG 1 cut(s) 289
SinI GGWCC 2 cut(s) 237, 496
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 706
SmlI CTYRAG 3 cut(s) 326, 393, 694
SmoI CTYRAG 3 cut(s) 326, 393, 694
Sse9I AATT 2 cut(s) 13, 144
SsiI CCGC 8 cut(s) 211, 286, 288, 312, 353, 458, 540, 654
SspMI CTAG 2 cut(s) 149, 365
SstI GAGCTC 3 cut(s) 195, 327, 525
StyD4I CCNGG 4 cut(s) 139, 219, 302, 482
TaaI ACNGT 6 cut(s) 133, 278, 425, 506, 612, 642
TaiI ACGT 2 cut(s) 110, 710
TaqI TCGA 7 cut(s) 174, 189, 273, 327, 447, 531, 755
TasI AATT 2 cut(s) 13, 144
TatI WGTACW 2 cut(s) 633, 698
TauI GCSGC 3 cut(s) 288, 315, 543
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TseFI GTSAC 2 cut(s) 122, 560
TseI GCWGC 6 cut(s) 35, 95, 204, 264, 267, 347
Tsp45I GTSAC 2 cut(s) 122, 560
TspGWI ACGGA 2 cut(s) 351, 509
VpaK11BI GGWCC 2 cut(s) 237, 496
XapI RAATTY 2 cut(s) 13, 144
XceI RCATGY 1 cut(s) 621
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 227
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 614
XspI CTAG 2 cut(s) 149, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.