pycom15g32690

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003160
Physical Location & Seq
Reverse (-)
31849242 .. 31851119
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGATCAAGAGAGTTTTAATGAAAAGTCACGGTACTGTTCACTTTAACGAAAAATCACATTTTTACACTAAAAATTTCATTAATTTTCTAAATAAAATAATTAAAGTGCTGGCGTGGATTTTCCATTTATGCAAACAACAACTCCCTCTCACAAGTCACTGGCCACAGGTCACTAGACTCCACAACCCTCTATCTCTCTTAAGCATTGCAATAACAACGGTCCAGATTCACTCCTCAGTTTCTGGCTCTTCTTTATCTTCCCCACCTTCACTTCCCCCGACTCCTCTCTGTCTCTCCGTCTTGCTTCTCTTTCTCTCTCTCTCTCTAGATTTTAGAGAGAATTGTAGTTGTAGTCTTTTTGCGTTGCTAGAAATCTCAGCAGAGAAGAGAAAAATGTCGTTGGGGAAGAGACCAAGGCCTCCGATGAAGAGGACCACAAGCATGTCAGAAATCACCTTTGATCCGAACACCATCAGTACTGAGGCACCTCACTCTCAACCGTCCGATCCCAACAACCCTTATCAGCCTCTTGCCTTATGGGGCGGTGGTGGTAGTGGTGGAGGTGGTCGTGGTGGTGGGCTTGATGGGTTGGATCAACGGCTCATGATGAAGTTGCCCTCACCATCATCAGCATCGCCAAGAAACCAGAAAAGAAATTCTGCTGATTTTGGAGAAACTGCCCACTTCTTGAAGGCTTGTGGTCTCTGCAAACGCCGCCTTATTCCCGGCCGCGATATTTACATGTACAGAGGTGACACAGCTTTCTGCAGTCTAGAGTGCCGGCAGCAACAGATAAACCTTGATGAGAGGAAAGACAAGTGTTCTTCCACCGCCGGACACCAAGTCTCCGCCAAAGGTGAAACCGTGTCTGCCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

293

Amino Acids

32.19

Weight (kDa)

9.63

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 223 - 271 8.8e-26 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 484
AccII CGCG 1 cut(s) 732
AciI CCGC 5 cut(s) 543, 715, 730, 831, 849
AclWI GGATC 3 cut(s) 455, 500, 600
AcoI YGGCCR 2 cut(s) 161, 727
AcsI RAATTY 2 cut(s) 73, 655
AfaI GTAC 3 cut(s) 34, 478, 746
AflII CTTAAG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 1 cut(s) 691
AhdI GACNNNNNGTC 1 cut(s) 842
AluBI AGCT 1 cut(s) 761
AluI AGCT 1 cut(s) 761
Alw26I GTCTC 4 cut(s) 296, 403, 707, 850
AlwI GGATC 3 cut(s) 455, 500, 600
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 3 cut(s) 161, 416, 727
ApeKI GCWGC 1 cut(s) 784
ApoI RAATTY 2 cut(s) 73, 655
AseI ATTAAT 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 220, 432
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 4 cut(s) 445, 612, 764, 869
AvaII GGWCC 2 cut(s) 220, 432
BalI TGGCCA 1 cut(s) 163
BanI GGYRCC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 796
BccI CCATC 3 cut(s) 479, 578, 631
BceAI ACGGC 1 cut(s) 614
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 4 cut(s) 296, 403, 707, 850
BfaI CTAG 4 cut(s) 174, 326, 368, 773
BfmI CTRYAG 1 cut(s) 766
BfrI CTTAAG 1 cut(s) 199
BisI GCNGC 3 cut(s) 715, 730, 785
BlsI GCNGC 3 cut(s) 716, 731, 786
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 1 cut(s) 726
Bme18I GGWCC 2 cut(s) 220, 432
BmeRI GACNNNNNGTC 1 cut(s) 842
BmgT120I GGNCC 2 cut(s) 220, 432
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 726
BmsI GCATC 1 cut(s) 641
BpuMI CCSGG 1 cut(s) 726
BsaI GGTCTC 2 cut(s) 403, 707
BsaJI CCNNGG 1 cut(s) 413
BsaXI ACNNNNNCTCC 4 cut(s) 126, 156, 830, 860
Bse118I RCCGGY 1 cut(s) 780
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 3 cut(s) 249, 390, 471
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 223, 273
BseX3I CGGCCG 1 cut(s) 727
BseXI GCAGC 1 cut(s) 796
Bsh1236I CGCG 1 cut(s) 732
Bsh1285I CGRYCG 1 cut(s) 730
BshFI GGCC 3 cut(s) 163, 418, 729
BshNI GGYRCC 1 cut(s) 484
BsiEI CGRYCG 1 cut(s) 730
BsiSI CCGG 3 cut(s) 726, 781, 834
BsmAI GTCTC 4 cut(s) 296, 403, 707, 850
BsnI GGCC 3 cut(s) 163, 418, 729
Bso31I GGTCTC 2 cut(s) 403, 707
Bsp1407I TGTACA 1 cut(s) 744
Bsp143I GATC 4 cut(s) 3, 460, 505, 592
BspACI CCGC 5 cut(s) 543, 715, 730, 831, 849
BspANI GGCC 3 cut(s) 163, 418, 729
BspCNI CTCAG 3 cut(s) 248, 389, 472
BspFNI CGCG 1 cut(s) 732
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 770
BspPI GGATC 3 cut(s) 455, 500, 600
BspQI GCTCTTC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 199
BspTNI GGTCTC 2 cut(s) 403, 707
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 780
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 780
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 4 cut(s) 3, 460, 505, 592
BssT1I CCWWGG 1 cut(s) 413
Bst4CI ACNGT 5 cut(s) 32, 37, 220, 501, 865
Bst6I CTCTTC 4 cut(s) 253, 380, 401, 422
BstAFI CTTAAG 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 744
BstC8I GCNNGC 2 cut(s) 111, 782
BstDEI CTNAG 3 cut(s) 235, 376, 480
BstFNI CGCG 1 cut(s) 732
BstKTI GATC 4 cut(s) 6, 463, 508, 595
BstMAI GTCTC 4 cut(s) 296, 403, 707, 850
BstMBI GATC 4 cut(s) 3, 460, 505, 592
BstMCI CGRYCG 1 cut(s) 730
BstMWI GCNNNNNNNGC 1 cut(s) 714
BstNSI RCATGY 2 cut(s) 445, 745
BstSCI CCNGG 1 cut(s) 724
BstSFI CTRYAG 1 cut(s) 766
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 1 cut(s) 796
BstZI CGGCCG 1 cut(s) 727
BsuRI GGCC 3 cut(s) 163, 418, 729
BtgZI GCGATG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 111, 782
CaiI CAGNNNCTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 603
Cfr10I RCCGGY 1 cut(s) 780
Cfr13I GGNCC 2 cut(s) 220, 432
Csp6I GTAC 3 cut(s) 33, 477, 745
CviAII CATG 3 cut(s) 442, 604, 742
CviJI RGCY 9 cut(s) 163, 246, 418, 526, 580, 601, 695, 729, 761
CviKI_1 RGCY 9 cut(s) 163, 246, 418, 526, 580, 601, 695, 729, 761
CviQI GTAC 3 cut(s) 33, 477, 745
DdeI CTNAG 3 cut(s) 235, 376, 480
DpnI GATC 4 cut(s) 5, 462, 507, 594
DpnII GATC 4 cut(s) 3, 460, 505, 592
DriI GACNNNNNGTC 1 cut(s) 842
EaeI YGGCCR 2 cut(s) 161, 727
EagI CGGCCG 1 cut(s) 727
Eam1104I CTCTTC 4 cut(s) 253, 380, 401, 422
Eam1105I GACNNNNNGTC 1 cut(s) 842
EarI CTCTTC 4 cut(s) 253, 380, 401, 422
EciI GGCGGA 1 cut(s) 838
EclXI CGGCCG 1 cut(s) 727
Eco130I CCWWGG 1 cut(s) 413
Eco147I AGGCCT 1 cut(s) 418
Eco31I GGTCTC 2 cut(s) 403, 707
Eco47I GGWCC 2 cut(s) 220, 432
Eco52I CGGCCG 1 cut(s) 727
EcoT14I CCWWGG 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 413
FaeI CATG 3 cut(s) 445, 607, 745
FaiI YATR 5 cut(s) 130, 443, 538, 605, 743
FatI CATG 3 cut(s) 441, 603, 741
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 715, 730, 785
Fsp4HI GCNGC 3 cut(s) 715, 730, 785
FspBI CTAG 4 cut(s) 174, 326, 368, 773
GluI GCNGC 3 cut(s) 715, 730, 785
HaeIII GGCC 3 cut(s) 163, 418, 729
HapII CCGG 3 cut(s) 726, 781, 834
Hin1II CATG 3 cut(s) 445, 607, 745
HinfI GANTC 3 cut(s) 177, 226, 280
HpaII CCGG 3 cut(s) 726, 781, 834
HphI GGTGA 4 cut(s) 445, 612, 764, 869
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 423, 448, 465, 505
Hpy188III TCNNGA 6 cut(s) 7, 223, 326, 604, 688, 773
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 276, 685
HpyCH4III ACNGT 5 cut(s) 32, 37, 220, 501, 865
HpyCH4V TGCA 4 cut(s) 132, 209, 708, 768
HpyF10VI GCNNNNNNNGC 1 cut(s) 714
HpyF3I CTNAG 3 cut(s) 235, 376, 480
Hsp92II CATG 3 cut(s) 445, 607, 745
KroI GCCGGC 1 cut(s) 780
KroNI GCCGGC 1 cut(s) 782
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 460, 505, 592
LguI GCTCTTC 1 cut(s) 253
LpnPI CCDG 9 cut(s) 95, 145, 152, 228, 236, 659, 739, 794, 847
Lsp1109I GCAGC 1 cut(s) 796
LweI GCATC 1 cut(s) 641
MaeI CTAG 4 cut(s) 174, 326, 368, 773
MaeIII GTNAC 4 cut(s) 26, 155, 169, 752
MalI GATC 4 cut(s) 5, 462, 507, 594
MboI GATC 4 cut(s) 3, 460, 505, 592
MboII GAAGA 6 cut(s) 240, 249, 397, 418, 439, 816
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 5 cut(s) 73, 82, 99, 340, 655
MluNI TGGCCA 1 cut(s) 163
MlyI GAGTC 2 cut(s) 171, 274
MmeI TCCRAC 1 cut(s) 570
Mox20I TGGCCA 1 cut(s) 163
MroNI GCCGGC 1 cut(s) 780
MscI TGGCCA 1 cut(s) 163
MseI TTAA 5 cut(s) 17, 45, 81, 102, 200
MslI CAYNNNNRTG 1 cut(s) 440
Msp20I TGGCCA 1 cut(s) 163
MspCI CTTAAG 1 cut(s) 199
MspI CCGG 3 cut(s) 726, 781, 834
MspR9I CCNGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 1 cut(s) 714
NaeI GCCGGC 1 cut(s) 782
NciI CCSGG 1 cut(s) 726
NdeII GATC 4 cut(s) 3, 460, 505, 592
NgoMIV GCCGGC 1 cut(s) 780
NlaIII CATG 3 cut(s) 445, 607, 745
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 4 cut(s) 26, 155, 169, 752
NspI RCATGY 2 cut(s) 445, 745
PagI TCATGA 1 cut(s) 603
PceI AGGCCT 1 cut(s) 418
PciI ACATGT 1 cut(s) 741
PciSI GCTCTTC 1 cut(s) 253
PdiI GCCGGC 1 cut(s) 782
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 3 cut(s) 716, 731, 786
PleI GAGTC 2 cut(s) 171, 274
PpsI GAGTC 2 cut(s) 171, 274
PscI ACATGT 1 cut(s) 741
PshBI ATTAAT 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 2 cut(s) 220, 432
PstI CTGCAG 1 cut(s) 770
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 3 cut(s) 34, 478, 746
RsaNI GTAC 3 cut(s) 33, 477, 745
RseI CAYNNNNRTG 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 253
SaqAI TTAA 5 cut(s) 17, 45, 81, 102, 200
SatI GCNGC 3 cut(s) 715, 730, 785
Sau3AI GATC 4 cut(s) 3, 460, 505, 592
Sau96I GGNCC 2 cut(s) 220, 432
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 2 cut(s) 171, 274
ScrFI CCNGG 1 cut(s) 726
SetI ASST 9 cut(s) 171, 268, 458, 490, 565, 754, 763, 801, 859
SfaNI GCATC 1 cut(s) 641
SfcI CTRYAG 1 cut(s) 766
SinI GGWCC 2 cut(s) 220, 432
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 5 cut(s) 73, 82, 99, 340, 655
SseBI AGGCCT 1 cut(s) 418
SsiI CCGC 5 cut(s) 543, 715, 730, 831, 849
SspMI CTAG 4 cut(s) 174, 326, 368, 773
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 724
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 5 cut(s) 32, 37, 220, 501, 865
TasI AATT 5 cut(s) 73, 82, 99, 340, 655
TatI WGTACW 2 cut(s) 476, 744
TauI GCSGC 2 cut(s) 717, 732
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 5 cut(s) 17, 45, 81, 102, 200
Tru9I TTAA 5 cut(s) 17, 45, 81, 102, 200
TscAI CASTG 1 cut(s) 164
TseFI GTSAC 4 cut(s) 26, 155, 169, 752
TseI GCWGC 1 cut(s) 784
Tsp45I GTSAC 4 cut(s) 26, 155, 169, 752
TspDTI ATGAA 4 cut(s) 35, 67, 440, 623
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 199
VpaK11BI GGWCC 2 cut(s) 220, 432
VspI ATTAAT 1 cut(s) 81
XapI RAATTY 2 cut(s) 73, 655
XbaI TCTAGA 2 cut(s) 325, 772
XceI RCATGY 2 cut(s) 445, 745
XspI CTAG 4 cut(s) 174, 326, 368, 773
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.