Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

3832596 .. 3832925

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAGAACAGATAACTACTTTGTTCCCTCGCTTTTCTTGATGCCCTCTTTTGAGCAAGAACTCGAAAAGCTCTTCCCCAAAAAGGAAACTGTTTTCCACCCCTTGGGTAGGTATCTTTTCCACCCTTCAAATCGTGTGTGGGGGATGATCACAAGGTACTACCAAGCTTACTTAGCAAGGGCAGATGAGATGATTGGGATTCAAGTTCGAACTTTCGAGCCGGGGCCTAGTCCCTTTCCGCATGTGATGAACCAAATTTATGCGTGTGTTTTCAAGCTGCTGTTATTGTCCCTAACCCATTGTTCATATTTCGATTGGGGCCTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

110

Amino Acids

12.93

Weight (kDa)

7.81

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	1 - 92	4.9e-42	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	103
AciI	CCGC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	255
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	82, 103, 108
AgsI	TTSAA	3 cut(s)	129, 203, 274
AluBI	AGCT	3 cut(s)	70, 167, 277
AluI	AGCT	3 cut(s)	70, 167, 277
AoxI	GGCC	2 cut(s)	224, 319
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	224, 319
AsuC2I	CCSGG	1 cut(s)	222
AsuII	TTCGAA	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	264
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	224, 319
BmiI	GGNNCC	2 cut(s)	225, 320
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	102, 221
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 103, 108
BseDI	CCNNGG	2 cut(s)	102, 221
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	82, 103, 108
BseXI	GCAGC	1 cut(s)	264
BshFI	GGCC	2 cut(s)	226, 321
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	216, 274
BslI	CCNNNNNNNGG	3 cut(s)	82, 103, 108
BsmFI	GGGAC	2 cut(s)	216, 274
BsnI	GGCC	2 cut(s)	226, 321
Bsp119I	TTCGAA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	226, 321
BspLI	GGNNCC	2 cut(s)	225, 320
BspQI	GCTCTTC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	102, 221
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	226, 321
BtsCI	GGATG	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	224, 319
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	6 cut(s)	70, 167, 220, 226, 277, 321
CviKI_1	RGCY	6 cut(s)	70, 167, 220, 226, 277, 321
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	106
EcoO109I	RGGNCCY	2 cut(s)	224, 319
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	1 cut(s)	245
FaiI	YATR	3 cut(s)	243, 261, 307
FaqI	GGGAC	2 cut(s)	216, 274
FatI	CATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	1 cut(s)	278
HaeIII	GGCC	2 cut(s)	226, 321
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	221
Hpy188III	TCNNGA	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	172
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	77
LpnPI	CCDG	1 cut(s)	234
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	326
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	64
MluCI	AATT	1 cut(s)	255
MnlI	CCTC	2 cut(s)	37, 55
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	225, 320
NspI	RCATGY	1 cut(s)	245
NspV	TTCGAA	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	199
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	279
Ppu21I	YACGTR	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	225, 320
PspPI	GGNCC	2 cut(s)	224, 319
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	77
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	2 cut(s)	224, 319
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	6 cut(s)	72, 113, 158, 169, 279, 329
SfaNI	GCATC	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	208
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	4 cut(s)	63, 208, 216, 312
TasI	AATT	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	263, 294
Van91I	CCANNNNNTGG	1 cut(s)	103
XagI	CCTNNNNNAGG	1 cut(s)	106
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	245
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.