Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Reverse (-)

7813553 .. 7815122

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAAGTTTTTAACGGAAAGATGTTATGCAAATCTGACTATTTTGTGTGCAAGCCCACTCTGGTCCGTCGCCGCTGAAAGTAAGTCACCTTGCCTCCTCTCCACCACACGCGTCCACTTTGTAAGTCCTCACCGCAAAATCCAGCTACCAACGACAATGGCTTCACTGCCCAAATCCACCACCGTCGTCCCAATCCTCATTCTCCTCGCCGCCTCTCTCTGCCTCGCACTGCCGTCATCAAAAGACCCAGTTCCCGCCGCGTGGCCCCACCAATTCCACTCCATACTGATGATGAACTACACCGGAACCCTCGAGCTGATCGACCTCTGGTACGACTGGCCCAACGGCCGGAACTTCAACATCATACGGCACCAGCTGGGATCGGTCACCTACGACCTCGAGTGGAACAACGGCACCTCCTTTGTCTACACATTGGACTCCGCCCGAGAGTGCAAAACCGTCCACCTTGAAGTGGGCATTCTCCGACCCGATTGGCTCGACGGAGCCAGGTATGTGGGTCGGCGCCTCGTGGACGGTGGTTTCTTGTGCGATGTTTGGGAGAAGGCCGACTTCATAACGTACTATGAGGACGTTGATACCAATCGGCCTGTCCATTGGGTTTTCTACACAGGGAGGGAGGCGCATGTGATGACATTTGAGGTTGGGGCAGTGCTCGAGGATGCAAAATGGCAAGCCCCTATGTACTGCTTTGATAACAAGAAAACTGATACCGTCCCAGAAGCAGAAGCAGAAGCAGAAGCAGAGTATTCCATCACCGGTGCTTCTATGGATGGAGGATTTCTGAAAGGTTCAAATCTATTGGGATTCAGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.28

Weight (kDa)

5.35

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	369, 413, 522
AccI	GTMKAC	1 cut(s)	426
AccII	CGCG	2 cut(s)	111, 260
AciI	CCGC	6 cut(s)	72, 133, 210, 255, 258, 441
AclWI	GGATC	1 cut(s)	388
AcoI	YGGCCR	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	523
AfaI	GTAC	3 cut(s)	332, 581, 704
AfiI	CCNNNNNNNGG	3 cut(s)	261, 348, 472
AflIII	ACRYGT	1 cut(s)	109
AgeI	ACCGGT	1 cut(s)	776
AgsI	TTSAA	3 cut(s)	358, 470, 813
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	3 cut(s)	145, 316, 376
AluI	AGCT	3 cut(s)	145, 316, 376
Alw21I	GWGCWC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	388
Ama87I	CYCGRG	4 cut(s)	311, 398, 444, 674
AoxI	GGCC	5 cut(s)	263, 338, 346, 564, 605
AsiGI	ACCGGT	1 cut(s)	776
AspLEI	GCGC	2 cut(s)	525, 643
AspS9I	GGNCC	3 cut(s)	63, 264, 339
AsuHPI	GGTGA	4 cut(s)	78, 122, 379, 766
AvaI	CYCGRG	4 cut(s)	311, 398, 444, 674
AvaII	GGWCC	1 cut(s)	63
BanI	GGYRCC	3 cut(s)	369, 413, 522
BauI	CACGAG	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	675
BccI	CCATC	2 cut(s)	779, 785
BceAI	ACGGC	4 cut(s)	217, 361, 383, 427
BciT130I	CCWGG	1 cut(s)	508
BfoI	RGCGCY	1 cut(s)	526
BisI	GCNGC	3 cut(s)	72, 210, 258
BlsI	GCNGC	3 cut(s)	73, 211, 259
Bme1390I	CCNGG	1 cut(s)	508
Bme18I	GGWCC	1 cut(s)	63
BmeT110I	CYCGRG	4 cut(s)	311, 398, 444, 674
BmgT120I	GGNCC	3 cut(s)	63, 264, 339
BmiI	GGNNCC	6 cut(s)	266, 307, 371, 415, 505, 524
BmrFI	CCNGG	1 cut(s)	508
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	523
BsaWI	WCCGGW	2 cut(s)	302, 776
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 401, 431
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 348, 472
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	2 cut(s)	248, 341
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	685, 796
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	3 cut(s)	261, 348, 472
BseNI	ACTGG	2 cut(s)	248, 341
BseRI	GAGGAG	2 cut(s)	86, 194
BseX3I	CGGCCG	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	376
Bsh1236I	CGCG	2 cut(s)	111, 260
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	5 cut(s)	265, 340, 348, 566, 607
BshNI	GGYRCC	3 cut(s)	369, 413, 522
BshTI	ACCGGT	1 cut(s)	776
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	675
BsiHKCI	CYCGRG	4 cut(s)	311, 398, 444, 674
BsiSI	CCGG	3 cut(s)	303, 349, 777
BslFI	GGGAC	2 cut(s)	173, 719
BslI	CCNNNNNNNGG	3 cut(s)	261, 348, 472
BsmFI	GGGAC	2 cut(s)	173, 719
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	5 cut(s)	265, 340, 348, 566, 607
BsoBI	CYCGRG	4 cut(s)	311, 398, 444, 674
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	318, 380
BspACI	CCGC	6 cut(s)	72, 133, 210, 255, 258, 441
BspANI	GGCC	5 cut(s)	265, 340, 348, 566, 607
BspFNI	CGCG	2 cut(s)	111, 260
BspLI	GGNNCC	6 cut(s)	266, 307, 371, 415, 505, 524
BspPI	GGATC	1 cut(s)	388
BspT107I	GGYRCC	3 cut(s)	369, 413, 522
BsrFI	RCCGGY	1 cut(s)	776
BsrI	ACTGG	2 cut(s)	248, 341
BssAI	RCCGGY	1 cut(s)	776
BssMI	GATC	2 cut(s)	318, 380
BssNI	GRCGYC	1 cut(s)	523
BssSI	CACGAG	1 cut(s)	527
Bst2BI	CACGAG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	4 cut(s)	184, 460, 536, 733
BstACI	GRCGYC	1 cut(s)	523
BstC8I	GCNNGC	2 cut(s)	52, 693
BstEII	GGTNACC	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	685, 796
BstFNI	CGCG	2 cut(s)	111, 260
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	525, 643
BstKTI	GATC	2 cut(s)	321, 383
BstMBI	GATC	2 cut(s)	318, 380
BstMCI	CGRYCG	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	508
BstNSI	RCATGY	1 cut(s)	647
BstPI	GGTNACC	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	506
BstUI	CGCG	2 cut(s)	111, 260
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstZI	CGGCCG	1 cut(s)	346
BsuRI	GGCC	5 cut(s)	265, 340, 348, 566, 607
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	2 cut(s)	685, 796
BtsI	GCAGTG	3 cut(s)	164, 227, 675
BtsIMutI	CAGTG	3 cut(s)	164, 227, 675
Cac8I	GCNNGC	2 cut(s)	52, 693
CfoI	GCGC	2 cut(s)	525, 643
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	3 cut(s)	63, 264, 339
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	331, 580, 703
CspAI	ACCGGT	1 cut(s)	776
CviAII	CATG	1 cut(s)	644
CviQI	GTAC	3 cut(s)	331, 580, 703
DinI	GGCGCC	1 cut(s)	524
DpnI	GATC	2 cut(s)	320, 382
DpnII	GATC	2 cut(s)	318, 380
EaeI	YGGCCR	1 cut(s)	346
EagI	CGGCCG	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	430
EclXI	CGGCCG	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	63
Eco52I	CGGCCG	1 cut(s)	346
Eco88I	CYCGRG	4 cut(s)	311, 398, 444, 674
Eco91I	GGTNACC	1 cut(s)	385
EcoO65I	GGTNACC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	506
EgeI	GGCGCC	1 cut(s)	524
EheI	GGCGCC	1 cut(s)	524
FaeI	CATG	1 cut(s)	647
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	2 cut(s)	173, 719
FatI	CATG	1 cut(s)	643
FauI	CCCGC	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	3 cut(s)	72, 210, 258
FokI	GGATG	2 cut(s)	692, 803
Fsp4HI	GCNGC	3 cut(s)	72, 210, 258
GlaI	GCGC	2 cut(s)	524, 642
GluI	GCNGC	3 cut(s)	72, 210, 258
GsaI	CCCAGC	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	526
HaeIII	GGCC	5 cut(s)	265, 340, 348, 566, 607
HapII	CCGG	3 cut(s)	303, 349, 777
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	525, 643
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	1 cut(s)	647
Hin6I	GCGC	2 cut(s)	523, 641
HinP1I	GCGC	2 cut(s)	523, 641
HinfI	GANTC	2 cut(s)	437, 825
HpaII	CCGG	3 cut(s)	303, 349, 777
HphI	GGTGA	4 cut(s)	78, 122, 379, 766
Hpy166II	GTNNAC	4 cut(s)	115, 427, 463, 532
Hpy188I	TCNGA	3 cut(s)	36, 485, 804
Hpy8I	GTNNAC	4 cut(s)	115, 427, 463, 532
Hpy99I	CGWCG	3 cut(s)	71, 188, 503
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	4 cut(s)	184, 460, 536, 733
HpyCH4IV	ACGT	2 cut(s)	578, 591
HpyCH4V	TGCA	4 cut(s)	29, 50, 453, 683
HpySE526I	ACGT	2 cut(s)	578, 591
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	1 cut(s)	647
HspAI	GCGC	2 cut(s)	523, 641
KasI	GGCGCC	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	318, 380
LmnI	GCTCC	1 cut(s)	503
LweI	GCATC	1 cut(s)	670
MaeII	ACGT	2 cut(s)	578, 591
MaeIII	GTNAC	2 cut(s)	84, 385
MalI	GATC	2 cut(s)	320, 382
MboI	GATC	2 cut(s)	318, 380
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	1 cut(s)	272
MluI	ACGCGT	1 cut(s)	109
Mly113I	GGCGCC	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	508
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	2 cut(s)	74, 376
MspI	CCGG	3 cut(s)	303, 349, 777
MspR9I	CCNGG	1 cut(s)	508
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	508
MvnI	CGCG	2 cut(s)	111, 260
NarI	GGCGCC	1 cut(s)	523
NdeII	GATC	2 cut(s)	318, 380
NlaIII	CATG	1 cut(s)	647
NlaIV	GGNNCC	6 cut(s)	266, 307, 371, 415, 505, 524
NmuCI	GTSAC	2 cut(s)	84, 385
NspI	RCATGY	1 cut(s)	647
PaeR7I	CTCGAG	3 cut(s)	311, 398, 674
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	825
PinAI	ACCGGT	1 cut(s)	776
PkrI	GCNGC	3 cut(s)	73, 211, 259
PleI	GAGTC	1 cut(s)	431
PluTI	GGCGCC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	506
PspEI	GGTNACC	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	6 cut(s)	266, 307, 371, 415, 505, 524
PspPI	GGNCC	3 cut(s)	63, 264, 339
PspXI	VCTCGAGB	3 cut(s)	311, 398, 674
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	3 cut(s)	332, 581, 704
RsaNI	GTAC	3 cut(s)	331, 580, 703
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	3 cut(s)	72, 210, 258
Sau3AI	GATC	2 cut(s)	318, 380
Sau96I	GGNCC	3 cut(s)	63, 264, 339
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	675
SfaNI	GCATC	1 cut(s)	670
SfoI	GGCGCC	1 cut(s)	524
Sfr274I	CTCGAG	3 cut(s)	311, 398, 674
SgrAI	CRCCGGYG	1 cut(s)	776
SinI	GGWCC	1 cut(s)	63
SlaI	CTCGAG	3 cut(s)	311, 398, 674
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	3 cut(s)	311, 398, 674
SmoI	CTYRAG	3 cut(s)	311, 398, 674
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	6 cut(s)	72, 133, 210, 255, 258, 441
SspDI	GGCGCC	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	506
TaaI	ACNGT	4 cut(s)	184, 460, 536, 733
TaiI	ACGT	2 cut(s)	581, 594
TaqI	TCGA	5 cut(s)	312, 321, 399, 498, 675
TaqII	GACCGA	1 cut(s)	373
TasI	AATT	1 cut(s)	272
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	3 cut(s)	74, 212, 260
TfiI	GAWTC	1 cut(s)	825
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	3 cut(s)	171, 234, 675
TseFI	GTSAC	2 cut(s)	84, 385
Tsp45I	GTSAC	2 cut(s)	84, 385
TspDTI	ATGAA	3 cut(s)	17, 308, 562
TspGWI	ACGGA	3 cut(s)	29, 55, 516
TspRI	CASTG	3 cut(s)	171, 234, 675
VpaK11BI	GGWCC	1 cut(s)	63
XceI	RCATGY	1 cut(s)	647
XhoI	CTCGAG	3 cut(s)	311, 398, 674
XmiI	GTMKAC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.