pycom16g11530
ERF Family

eukaryotic peptide chain release factor subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
8035256 .. 8037027
1772 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1632 bp
ATGGCGGATGGTCACGAGACTGATAAGAACATTGAGATTTGGAAGATTAAGAAACTGATCAATCCACTTGAAGCTGCAAGGGGTAATGGAACCAGCATGATTTCTCTCATCATGCATCCCCGAGATCAGATTTCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCATCGAACATTAAGAGCAGGGTGAATCGTCAATCTGTTCTTGGGGCTATTACTTCTGCTCAGCAGAGGCTCAAGCTTTACAACAAGGTTCCTCCTAATGGGCTTGTGTTGTACACAGGGACCATTGTTACTGACGATGGGAAGGAGAAAAAGGTTACCATTGATTTTGAGCCTTTCAGGCCCATCAATGCATCTCTTTACCTCTGTGACAACAAGTTCCATATTGAAGCGCTGAATGAACTCTTAGAATCTGATGACAAATTTGGCTTCATTGTCATGGATGGAAATGGGACACTTTTTGGGACATTAAGTGGAAACACTAGAGAGGTGCTTCATAAATTTAGTGTTGACCTTCCAAAGAAGCACGGAAGAGGAGGGCAATCAGCTCTACGTTTTGCTCGTCTTCGAATGGAGAAGCGACACAACTATGTTAGGAAGACAGCGGAGCTTGCAACCCAGTTTTATATTAATCCTGCCACCAGTCAGCCCAATGTTTCAGGATTAATACTCGCTGGGTCAGCTGACTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGTCTGCAGGCCAAAATACTGAATGTGGTGGATGTTTCTTATGGAGGAGAGAACGGTTTCAACCAGGCTATTGAGTTGTCGGCAGAGATCCTGTCCAATGTGAAATTCATACAGGAAAAGAAGTTGATAGGAAAATACTTTGAGAGATCGATCAGCCAGGATACAGGAAAGTATGTTTTTGGTGTGGACGACACACTAAAAGCTCTAGAGATGGGTGCTGTTGAAATTCTCATTGTGTGGGAAAGTCTCGACATCAATCGGTATGTGCTGAAAAATATTTCTGGCGAGATTATATTGAAGCATTTCAACAAGGAGCAGGAGAACAGCCAGAGCAACTTCCGGGACGCTGCCAATGCAGAGCTAGAGGTTCAGGACAAGATGTCACTGCTGGAGTGGTTTGCTAATGAGTACAGGCGCTTTGGTTGTACTCTCGAGTTTGTCACCAACAAGTCACAGGAGGGGTCACAGTTCTGCCGTGGTTTTGGTGGAATTGGGGGGATTCTTCGCTACCAGCTTGATATGAGGTCGTTTGATGAGTTTTCTGACAATGAAGAAGAAGGTGGGGTGCAAAAAGCCTGCACCAGTGCGCACGGAGTCGTGGTTGCTGCTGCTGCTCCTGAGCTATTGACAGAAACATGCTCACGCTTGATTGAGGACATTACATTGTTATCTGATCCCGAAAACCTTGATCTGGTGATTTCGTCTGGATCGCAGAAGAGGCAAGGAAAATCGATCATATTGGACGAGGATACAATGCCGAGGGCTGCTTCCTTTGGGCCAAGACCTTCGGAACATATGCACCCATGTATCGAGAACCCCACAATGATGCTGGATTGTGGTCCTTGGGGTTGCGCATTTGGTCGTGTAGTTGTATTTGGTGGTTTACTTGTGACTTAA

Protein Analysis

544

Amino Acids

60.42

Weight (kDa)

5.65

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eRF1_1 PF03463 17 - 139 5.3e-51 eRF1 domain 1
eRF1_2 PF03464 144 - 277 2e-42 eRF1 domain 2
eRF1_3 PF03465 281 - 417 6.5e-30 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 1323, 1588
AciI CCGC 2 cut(s) 5, 614
AclWI GGATC 4 cut(s) 725, 817, 1403, 1450
AcsI RAATTY 5 cut(s) 161, 431, 509, 839, 960
AfaI GTAC 3 cut(s) 284, 1145, 1162
AfeI AGCGCT 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 269, 1426
AgsI TTSAA 7 cut(s) 71, 398, 700, 796, 959, 1033, 1042
AhdI GACNNNNNGTC 1 cut(s) 1114
AjnI CCWGG 2 cut(s) 798, 891
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
Alw26I GTCTC 2 cut(s) 11, 986
AlwI GGATC 4 cut(s) 725, 817, 1403, 1450
Ama87I CYCGRG 2 cut(s) 120, 1166
Aor51HI AGCGCT 1 cut(s) 402
AoxI GGCC 3 cut(s) 350, 744, 1511
ApeKI GCWGC 6 cut(s) 74, 1082, 1340, 1343, 1346, 1499
ApoI RAATTY 5 cut(s) 161, 431, 509, 839, 960
AseI ATTAAT 2 cut(s) 639, 674
Asp700I GAANNNNTTC 2 cut(s) 791, 1037
AspLEI GCGC 4 cut(s) 403, 1152, 1324, 1589
AspS9I GGNCC 4 cut(s) 291, 351, 1511, 1574
AsuC2I CCSGG 1 cut(s) 1076
AsuHPI GGTGA 4 cut(s) 167, 205, 1168, 1441
AsuII TTCGAA 1 cut(s) 577
AvaI CYCGRG 2 cut(s) 120, 1166
AvaII GGWCC 2 cut(s) 291, 1574
BaeI ACNNNNGTAYC 2 cut(s) 1525, 1558
BauI CACGAG 2 cut(s) 14, 135
BbsI GAAGAC 2 cut(s) 566, 614
BbvI GCAGC 6 cut(s) 61, 1069, 1327, 1330, 1333, 1486
BccI CCATC 5 cut(s) 2, 302, 362, 446, 940
BceAI ACGGC 1 cut(s) 1194
BciT130I CCWGG 2 cut(s) 800, 893
BciVI GTATCC 2 cut(s) 889, 1477
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 1 cut(s) 1076
BcoDI GTCTC 2 cut(s) 11, 986
BfaI CTAG 3 cut(s) 492, 941, 1097
BfmI CTRYAG 1 cut(s) 740
BfoI RGCGCY 2 cut(s) 404, 1153
BfuI GTATCC 2 cut(s) 889, 1477
BglI GCCNNNNNGGC 1 cut(s) 349
BisI GCNGC 6 cut(s) 75, 1083, 1341, 1344, 1347, 1500
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 6 cut(s) 76, 1084, 1342, 1345, 1348, 1501
Bme1390I CCNGG 3 cut(s) 800, 893, 1076
Bme18I GGWCC 2 cut(s) 291, 1574
BmeRI GACNNNNNGTC 1 cut(s) 1114
BmeT110I CYCGRG 2 cut(s) 120, 1166
BmgT120I GGNCC 4 cut(s) 291, 351, 1511, 1574
BmiI GGNNCC 3 cut(s) 91, 261, 292
BmrFI CCNGG 3 cut(s) 800, 893, 1076
BmrI ACTGGG 1 cut(s) 622
BmsI GCATC 5 cut(s) 124, 138, 182, 371, 1551
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 2 cut(s) 566, 614
BpmI CTGGAG 1 cut(s) 1145
Bpu10I CCTNAGC 1 cut(s) 1353
Bpu1102I GCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 1076
Bsa29I ATCGAT 2 cut(s) 884, 1466
BsaJI CCNNGG 3 cut(s) 1210, 1493, 1577
BsaXI ACNNNNNCTCC 2 cut(s) 1320, 1350
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 1426
Bse1I ACTGG 3 cut(s) 628, 651, 1317
BseBI CCWGG 2 cut(s) 800, 893
BseCI ATCGAT 2 cut(s) 884, 1466
BseDI CCNNGG 3 cut(s) 1210, 1493, 1577
BseGI GGATG 4 cut(s) 13, 115, 457, 772
BseLI CCNNNNNNNGG 2 cut(s) 269, 1426
BseMII CTCAG 3 cut(s) 245, 696, 1344
BseNI ACTGG 3 cut(s) 628, 651, 1317
BseRI GAGGAG 2 cut(s) 558, 795
BseXI GCAGC 6 cut(s) 61, 1069, 1327, 1330, 1333, 1486
BseYI CCCAGC 1 cut(s) 683
BsgI GTGCAG 1 cut(s) 1297
BshFI GGCC 3 cut(s) 352, 746, 1513
BshVI ATCGAT 2 cut(s) 884, 1466
BsiHKCI CYCGRG 2 cut(s) 120, 1166
BsiSI CCGG 1 cut(s) 1075
BslFI GGGAC 4 cut(s) 304, 475, 487, 1091
BslI CCNNNNNNNGG 2 cut(s) 269, 1426
BsmAI GTCTC 2 cut(s) 11, 986
BsmFI GGGAC 4 cut(s) 304, 475, 487, 1091
BsnI GGCC 3 cut(s) 352, 746, 1513
BsoBI CYCGRG 2 cut(s) 120, 1166
Bsp119I TTCGAA 1 cut(s) 577
Bsp1407I TGTACA 1 cut(s) 282
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 2 cut(s) 5, 614
BspANI GGCC 3 cut(s) 352, 746, 1513
BspCNI CTCAG 3 cut(s) 244, 697, 1345
BspDI ATCGAT 2 cut(s) 884, 1466
BspLI GGNNCC 3 cut(s) 91, 261, 292
BspMAI CTGCAG 1 cut(s) 744
BspPI GGATC 4 cut(s) 725, 817, 1403, 1450
BspT104I TTCGAA 1 cut(s) 577
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 3 cut(s) 628, 651, 1317
BssECI CCNNGG 3 cut(s) 1210, 1493, 1577
BssSI CACGAG 2 cut(s) 14, 135
BssT1I CCWWGG 1 cut(s) 1577
Bst2BI CACGAG 2 cut(s) 14, 135
Bst2UI CCWGG 2 cut(s) 800, 893
Bst4CI ACNGT 2 cut(s) 791, 1203
Bst6I CTCTTC 2 cut(s) 535, 1445
BstAUI TGTACA 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 577
BstC8I GCNNGC 3 cut(s) 621, 744, 1312
BstDEI CTNAG 6 cut(s) 144, 231, 415, 705, 710, 1353
BstDSI CCRYGG 1 cut(s) 1210
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 4 cut(s) 13, 115, 457, 772
BstH2I RGCGCY 2 cut(s) 404, 1153
BstHHI GCGC 4 cut(s) 403, 1152, 1324, 1589
BstMAI GTCTC 2 cut(s) 11, 986
BstMWI GCNNNNNNNGC 6 cut(s) 349, 620, 689, 1088, 1346, 1453
BstNI CCWGG 2 cut(s) 800, 893
BstNSI RCATGY 1 cut(s) 1374
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 3 cut(s) 798, 891, 1074
BstSFI CTRYAG 1 cut(s) 740
BstV1I GCAGC 6 cut(s) 61, 1069, 1327, 1330, 1333, 1486
BstV2I GAAGAC 2 cut(s) 566, 614
BstX2I RGATCY 1 cut(s) 822
BstYI RGATCY 1 cut(s) 822
Bsu15I ATCGAT 2 cut(s) 884, 1466
BsuI GTATCC 2 cut(s) 889, 1477
BsuRI GGCC 3 cut(s) 352, 746, 1513
BsuTUI ATCGAT 2 cut(s) 884, 1466
BtgI CCRYGG 1 cut(s) 1210
BtsCI GGATG 4 cut(s) 13, 115, 457, 772
BtsI GCAGTG 1 cut(s) 1118
BtsIMutI CAGTG 2 cut(s) 1118, 1324
Cac8I GCNNGC 3 cut(s) 621, 744, 1312
CfoI GCGC 4 cut(s) 403, 1152, 1324, 1589
Cfr13I GGNCC 4 cut(s) 291, 351, 1511, 1574
ClaI ATCGAT 2 cut(s) 884, 1466
CseI GACGC 1 cut(s) 1088
Csp6I GTAC 3 cut(s) 283, 1144, 1161
CviAII CATG 5 cut(s) 97, 112, 448, 1371, 1539
CviQI GTAC 3 cut(s) 283, 1144, 1161
DdeI CTNAG 6 cut(s) 144, 231, 415, 705, 710, 1353
DriI GACNNNNNGTC 1 cut(s) 1114
Eam1104I CTCTTC 2 cut(s) 535, 1445
Eam1105I GACNNNNNGTC 1 cut(s) 1114
EarI CTCTTC 2 cut(s) 535, 1445
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 1577
Eco47I GGWCC 2 cut(s) 291, 1574
Eco47III AGCGCT 1 cut(s) 402
Eco88I CYCGRG 2 cut(s) 120, 1166
Eco91I GGTNACC 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 798, 891
EcoT14I CCWWGG 1 cut(s) 1577
EcoT22I ATGCAT 2 cut(s) 117, 364
ErhI CCWWGG 1 cut(s) 1577
FaeI CATG 5 cut(s) 100, 115, 451, 1374, 1542
FaqI GGGAC 4 cut(s) 304, 475, 487, 1091
FatI CATG 5 cut(s) 96, 111, 447, 1370, 1538
FauNDI CATATG 1 cut(s) 1530
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 6 cut(s) 75, 1083, 1341, 1344, 1347, 1500
FokI GGATG 4 cut(s) 20, 102, 464, 779
Fsp4HI GCNGC 6 cut(s) 75, 1083, 1341, 1344, 1347, 1500
FspAI RTGCGCAY 1 cut(s) 1323
FspBI CTAG 3 cut(s) 492, 941, 1097
FspI TGCGCA 2 cut(s) 1323, 1588
GlaI GCGC 4 cut(s) 402, 1151, 1323, 1588
GluI GCNGC 6 cut(s) 75, 1083, 1341, 1344, 1347, 1500
GsaI CCCAGC 1 cut(s) 687
GsuI CTGGAG 1 cut(s) 1145
HaeII RGCGCY 2 cut(s) 404, 1153
HaeIII GGCC 3 cut(s) 352, 746, 1513
HapII CCGG 1 cut(s) 1075
HgaI GACGC 1 cut(s) 1088
HhaI GCGC 4 cut(s) 403, 1152, 1324, 1589
Hin1II CATG 5 cut(s) 100, 115, 451, 1374, 1542
Hin6I GCGC 4 cut(s) 401, 1150, 1322, 1587
HinP1I GCGC 4 cut(s) 401, 1150, 1322, 1587
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 4 cut(s) 196, 419, 1234, 1329
HpaII CCGG 1 cut(s) 1075
HphI GGTGA 4 cut(s) 167, 205, 1168, 1441
Hpy166II GTNNAC 4 cut(s) 285, 520, 922, 1619
Hpy188I TCNGA 6 cut(s) 129, 424, 721, 1279, 1408, 1525
Hpy8I GTNNAC 4 cut(s) 285, 520, 922, 1619
HpyAV CCTTC 4 cut(s) 307, 533, 1286, 1530
HpyCH4III ACNGT 2 cut(s) 791, 1203
HpyCH4IV ACGT 1 cut(s) 562
HpyF10VI GCNNNNNNNGC 6 cut(s) 349, 620, 689, 1088, 1346, 1453
HpyF3I CTNAG 6 cut(s) 144, 231, 415, 705, 710, 1353
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 5 cut(s) 100, 115, 451, 1374, 1542
HspAI GCGC 4 cut(s) 401, 1150, 1322, 1587
Ksp22I TGATCA 1 cut(s) 57
LmnI GCTCC 3 cut(s) 616, 1048, 1354
Lsp1109I GCAGC 6 cut(s) 61, 1069, 1327, 1330, 1333, 1486
LweI GCATC 5 cut(s) 124, 138, 182, 371, 1551
MaeI CTAG 3 cut(s) 492, 941, 1097
MaeII ACGT 1 cut(s) 562
MboII GAAGA 8 cut(s) 55, 552, 566, 619, 1229, 1298, 1301, 1462
MflI RGATCY 1 cut(s) 822
MluCI AATT 6 cut(s) 161, 431, 509, 839, 960, 1224
MlyI GAGTC 1 cut(s) 1338
Mph1103I ATGCAT 2 cut(s) 117, 364
MroXI GAANNNNTTC 2 cut(s) 791, 1037
MseI TTAA 6 cut(s) 48, 183, 479, 639, 674, 1630
MslI CAYNNNNRTG 3 cut(s) 446, 597, 1559
MspA1I CMGCKG 2 cut(s) 614, 692
MspI CCGG 1 cut(s) 1075
MspR9I CCNGG 3 cut(s) 800, 893, 1076
MvaI CCWGG 2 cut(s) 800, 893
MwoI GCNNNNNNNGC 6 cut(s) 349, 620, 689, 1088, 1346, 1453
NciI CCSGG 1 cut(s) 1076
NdeI CATATG 1 cut(s) 1530
NlaIII CATG 5 cut(s) 100, 115, 451, 1374, 1542
NlaIV GGNNCC 3 cut(s) 91, 261, 292
NmeAIII GCCGAG 1 cut(s) 1518
NmuCI GTSAC 7 cut(s) 11, 377, 1116, 1174, 1185, 1197, 1624
NsbI TGCGCA 2 cut(s) 1323, 1588
NsiI ATGCAT 2 cut(s) 117, 364
NspI RCATGY 1 cut(s) 1374
NspV TTCGAA 1 cut(s) 577
PaeR7I CTCGAG 1 cut(s) 1166
PcsI WCGNNNNNNNCGW 1 cut(s) 568
PdmI GAANNNNTTC 2 cut(s) 791, 1037
PfeI GAWTC 3 cut(s) 196, 419, 1234
PfoI TCCNGGA 1 cut(s) 1074
PkrI GCNGC 6 cut(s) 76, 1084, 1342, 1345, 1348, 1501
PleI GAGTC 1 cut(s) 1337
PpsI GAGTC 1 cut(s) 1337
PshBI ATTAAT 2 cut(s) 639, 674
Psp6I CCWGG 2 cut(s) 798, 891
PspEI GGTNACC 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 683
PspGI CCWGG 2 cut(s) 798, 891
PspN4I GGNNCC 3 cut(s) 91, 261, 292
PspPI GGNCC 4 cut(s) 291, 351, 1511, 1574
PstI CTGCAG 1 cut(s) 744
PsuI RGATCY 1 cut(s) 822
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 3 cut(s) 284, 1145, 1162
RsaNI GTAC 3 cut(s) 283, 1144, 1161
RseI CAYNNNNRTG 3 cut(s) 446, 597, 1559
SaqAI TTAA 6 cut(s) 48, 183, 479, 639, 674, 1630
SatI GCNGC 6 cut(s) 75, 1083, 1341, 1344, 1347, 1500
Sau96I GGNCC 4 cut(s) 291, 351, 1511, 1574
SchI GAGTC 1 cut(s) 1338
ScrFI CCNGG 3 cut(s) 800, 893, 1076
SfaNI GCATC 5 cut(s) 124, 138, 182, 371, 1551
SfcI CTRYAG 1 cut(s) 740
Sfr274I CTCGAG 1 cut(s) 1166
SfuI TTCGAA 1 cut(s) 577
SinI GGWCC 2 cut(s) 291, 1574
SlaI CTCGAG 1 cut(s) 1166
SmiMI CAYNNNNRTG 3 cut(s) 446, 597, 1559
SmlI CTYRAG 2 cut(s) 242, 1166
SmoI CTYRAG 2 cut(s) 242, 1166
Sse9I AATT 6 cut(s) 161, 431, 509, 839, 960, 1224
SsiI CCGC 2 cut(s) 5, 614
SspI AATATT 1 cut(s) 1012
SspMI CTAG 3 cut(s) 492, 941, 1097
StyD4I CCNGG 3 cut(s) 798, 891, 1074
StyI CCWWGG 1 cut(s) 1577
TaaI ACNGT 2 cut(s) 791, 1203
TaiI ACGT 1 cut(s) 565
TaqI TCGA 7 cut(s) 176, 577, 884, 984, 1167, 1466, 1545
TasI AATT 6 cut(s) 161, 431, 509, 839, 960, 1224
TatI WGTACW 3 cut(s) 282, 1143, 1160
TfiI GAWTC 3 cut(s) 196, 419, 1234
Tru1I TTAA 6 cut(s) 48, 183, 479, 639, 674, 1630
Tru9I TTAA 6 cut(s) 48, 183, 479, 639, 674, 1630
TscAI CASTG 2 cut(s) 1125, 1324
TseFI GTSAC 7 cut(s) 11, 377, 1116, 1174, 1185, 1197, 1624
TseI GCWGC 6 cut(s) 74, 1082, 1340, 1343, 1346, 1499
Tsp45I GTSAC 7 cut(s) 11, 377, 1116, 1174, 1185, 1197, 1624
TspDTI ATGAA 6 cut(s) 174, 423, 430, 494, 832, 1299
TspGWI ACGGA 2 cut(s) 552, 1341
TspRI CASTG 2 cut(s) 1125, 1324
VpaK11BI GGWCC 2 cut(s) 291, 1574
VspI ATTAAT 2 cut(s) 639, 674
XapI RAATTY 5 cut(s) 161, 431, 509, 839, 960
XbaI TCTAGA 1 cut(s) 940
XceI RCATGY 1 cut(s) 1374
XcmI CCANNNNNNNNNTGG 1 cut(s) 1561
XhoI CTCGAG 1 cut(s) 1166
XmnI GAANNNNTTC 2 cut(s) 791, 1037
XspI CTAG 3 cut(s) 492, 941, 1097
Zsp2I ATGCAT 2 cut(s) 117, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.