Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Reverse (-)

8661522 .. 8662333

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACGCAATCAGCCAGTTGCAAGAAAAGGTGAACACGATCGCGACAATTGCTTTCACCACCATCGGAACGCTACAACGGGATGCGCCTCCGGTCCGAATCTCCCCAAATTACCCGGAAGCCGGATCCGCACCGACCCCCAATCCCAATCCGAATCCGAATCCCAACCAGAATCCGACTCCAAACCCGAATCCGACCCCGGAAAGTGACACGGAGTTCGCGAAGCAACCCAAGCTGATGAGTGCTGATCTAGTGAAAGCAGCAAAGCAGTTTGATGCATTGGTGGCGGCGCTGCCGTTGTCGGAGGGAGGCGAGGAAGCTCAGCTGAGGAGGATTGCTCAGCTTCAAGCCGAGAACGACGCCGTCGGCCAACAGCTTGAGAAGCAACTGGAAGCTGCAGAGAGAGAATTGCAAGAGGTCAGAGAGTTGTTTGGAGAAGCAGCGGATCACTGTTTGAACATGAAGAAATCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

159

Amino Acids

17.12

Weight (kDa)

4.63

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	1 - 148	1.3e-31	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	44, 221
AciI	CCGC	3 cut(s)	129, 287, 443
AclWI	GGATC	3 cut(s)	120, 133, 453
AcoI	YGGCCR	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	347, 457
AluBI	AGCT	6 cut(s)	235, 320, 325, 343, 376, 395
AluI	AGCT	6 cut(s)	235, 320, 325, 343, 376, 395
AlwI	GGATC	3 cut(s)	120, 133, 453
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	4 cut(s)	260, 292, 395, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	2 cut(s)	88, 292
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	2 cut(s)	116, 200
AsuHPI	GGTGA	2 cut(s)	43, 49
AvaII	GGWCC	1 cut(s)	94
BamHI	GGATCC	1 cut(s)	125
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	4 cut(s)	272, 279, 382, 452
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	2 cut(s)	280, 347
BcnI	CCSGG	2 cut(s)	116, 200
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	5 cut(s)	261, 288, 293, 396, 441
BlpI	GCTNAGC	2 cut(s)	321, 339
BlsI	GCNGC	5 cut(s)	262, 289, 294, 397, 442
Bme1390I	CCNGG	2 cut(s)	116, 200
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	116, 200
BmsI	GCATC	2 cut(s)	73, 265
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu1102I	GCTNAGC	2 cut(s)	321, 339
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	116, 200
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	16, 393
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	3 cut(s)	317, 335, 353
BseNI	ACTGG	2 cut(s)	16, 393
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	4 cut(s)	272, 279, 382, 452
Bsh1236I	CGCG	2 cut(s)	44, 221
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	4 cut(s)	92, 116, 123, 200
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	39, 125, 247, 445
Bsp1720I	GCTNAGC	2 cut(s)	321, 339
Bsp68I	TCGCGA	2 cut(s)	44, 221
BspACI	CCGC	3 cut(s)	129, 287, 443
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	3 cut(s)	318, 334, 352
BspFNI	CGCG	2 cut(s)	44, 221
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	3 cut(s)	120, 133, 453
BsrI	ACTGG	2 cut(s)	16, 393
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	4 cut(s)	39, 125, 247, 445
BssNI	GRCGYC	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	452
BstACI	GRCGYC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	321, 326, 339
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	2 cut(s)	44, 221
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	88, 292
BstKTI	GATC	4 cut(s)	42, 128, 250, 448
BstMBI	GATC	4 cut(s)	39, 125, 247, 445
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 128, 232, 284, 382
BstSCI	CCNGG	2 cut(s)	114, 198
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	2 cut(s)	44, 221
BstV1I	GCAGC	4 cut(s)	272, 279, 382, 452
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	448
BtuMI	TCGCGA	2 cut(s)	44, 221
CfoI	GCGC	2 cut(s)	88, 292
Cfr13I	GGNCC	1 cut(s)	94
CpoI	CGGWCCG	1 cut(s)	94
CseI	GACGC	2 cut(s)	14, 368
CspI	CGGWCCG	1 cut(s)	94
CviAII	CATG	1 cut(s)	460
DdeI	CTNAG	3 cut(s)	321, 326, 339
DpnI	GATC	4 cut(s)	41, 127, 249, 447
DpnII	GATC	4 cut(s)	39, 125, 247, 445
EaeI	YGGCCR	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	280
FaeI	CATG	1 cut(s)	463
FaiI	YATR	1 cut(s)	461
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	5 cut(s)	261, 288, 293, 396, 441
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	5 cut(s)	261, 288, 293, 396, 441
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	87, 291
GluI	GCNGC	5 cut(s)	261, 288, 293, 396, 441
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	4 cut(s)	92, 116, 123, 200
HgaI	GACGC	2 cut(s)	14, 368
HhaI	GCGC	2 cut(s)	88, 292
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	2 cut(s)	86, 290
HinP1I	GCGC	2 cut(s)	86, 290
HinfI	GANTC	6 cut(s)	99, 154, 160, 172, 178, 190
HpaII	CCGG	4 cut(s)	92, 116, 123, 200
HphI	GGTGA	2 cut(s)	43, 49
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	9 cut(s)	68, 98, 153, 159, 177, 195, 304, 422, 472
Hpy188III	TCNNGA	2 cut(s)	43, 220
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	2 cut(s)	362, 368
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4V	TGCA	4 cut(s)	22, 278, 398, 412
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 128, 232, 284, 382
HpyF3I	CTNAG	3 cut(s)	321, 326, 339
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	2 cut(s)	86, 290
Kzo9I	GATC	4 cut(s)	39, 125, 247, 445
LpnPI	CCDG	7 cut(s)	29, 105, 129, 136, 182, 213, 374
Lsp1109I	GCAGC	4 cut(s)	272, 279, 382, 452
LweI	GCATC	2 cut(s)	73, 265
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	4 cut(s)	41, 127, 249, 447
MboI	GATC	4 cut(s)	39, 125, 247, 445
MboII	GAAGA	1 cut(s)	475
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	3 cut(s)	48, 109, 407
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	3 cut(s)	200, 218, 282
MnlI	CCTC	7 cut(s)	99, 298, 302, 307, 321, 324, 409
Mph1103I	ATGCAT	1 cut(s)	280
MspA1I	CMGCKG	2 cut(s)	325, 443
MspI	CCGG	4 cut(s)	92, 116, 123, 200
MspR9I	CCNGG	2 cut(s)	116, 200
MunI	CAATTG	1 cut(s)	48
MvnI	CGCG	2 cut(s)	44, 221
MwoI	GCNNNNNNNGC	5 cut(s)	50, 128, 232, 284, 382
NciI	CCSGG	2 cut(s)	116, 200
NdeII	GATC	4 cut(s)	39, 125, 247, 445
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	206
NruI	TCGCGA	2 cut(s)	44, 221
NsiI	ATGCAT	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PfeI	GAWTC	5 cut(s)	99, 154, 160, 172, 190
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	262, 289, 294, 397, 442
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	125
PsyI	GACNNNGTC	1 cut(s)	362
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	325
RruI	TCGCGA	2 cut(s)	44, 221
Rsr2I	CGGWCCG	1 cut(s)	94
RsrII	CGGWCCG	1 cut(s)	94
SatI	GCNGC	5 cut(s)	261, 288, 293, 396, 441
Sau3AI	GATC	4 cut(s)	39, 125, 247, 445
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	116, 200
SetI	ASST	8 cut(s)	33, 237, 322, 327, 345, 378, 397, 420
SfaNI	GCATC	2 cut(s)	73, 265
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	48, 109, 407
SsiI	CCGC	3 cut(s)	129, 287, 443
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	114, 198
TaaI	ACNGT	1 cut(s)	452
TasI	AATT	3 cut(s)	48, 109, 407
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	5 cut(s)	99, 154, 160, 172, 190
TscAI	CASTG	1 cut(s)	455
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	4 cut(s)	260, 292, 395, 440
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	476
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	455
Tth111I	GACNNNGTC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	94
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.