pycom16g18320

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
14940254 .. 14945412
5159 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1524 bp
ATGGGACTGCAGCAATCGAAAGATGAGTTGCTCCATCAGCAAGTCAGCTGTGGAAACATCGAAGGGATTAAAGCACTCTGCAGAGACGGTGCAGGCCTGGAGTGGATTGATAGAGAGGGGAAAACCCCTTTGATTGCGGCCTGTATAAATCCTGGGCATAACCTTGCAAAAACCTTGATTGAACTCGGTGCAAACGTCAACGCCTATCGCCCCGGTCGTCATGCTGGGACTCCTCTACATCATGCAGCTAAAAAAGGCCTAGAAGATGTTGTTAAATTACTTCTTTCGCATGGAGCAAATGCTTTAATCATGAATGATGACTGTCAAAGTCCTCTTGACGTTGCTAGGGCGAAAGGGCACACCAATGTTGTCCGCGCAATTGAGAGGCATATTTGCTTATTCTCTGGTTGGTTGCGGGAGTTTTATGGTCCTGGATTTCTCGAAGTACTTGCTCCTCAGTTGGTTTCAAGAAAAGTTTGGGTTGTTGTTTTGCCATGTAGTTCTCGCAAACCCACCAAGCCTTTCAAGTTGGAGCTTGCCATGTATCCTACCATGCAGGATGCCAAGCCACGGACAGTTATTGCATTGTGGAAAGTCAATCTGGAAGAACCAAAGTTACACCTGTCTGATCCTTCAGTTGTGATTCACGATAACACCGCAATCCCAAGAGGCAGGAGGCGGAGAAGAAGCATGTACATCGCCCAAGAGGCTAGTAGTAGGCATCAAAAACTTAGGCAAACACGTGTCAAACTTGCAGCTGCAGATGAAAATGACAAGCAACAACTTCAGTTGTTTTGCAATGCATGCAAAGGAATTCCACAGGCGTGTCCTGCGTTTTTGGGTAACAACCAACCCCCAGCTGCTCCAGCAACGGCGCCACCAGCTGCTCCAGCAACGGCACCACCAGCGGCAGAAGATTTAGAGTTGGCCATGGCTATTAGTGCTTCCATTCAGTCTGCTATGCAGGAGAGAGCATCCTTTCCTGATCCTCACCCAACCTATGAAGGAAGTGCATCCAGTAGTTATAATGGTTGGGCCGGAGCCTCTCCGAGTAATGACAGTTACAATGGTTGGGGTGTACCAACTGCCGCTGCTGCTCCAAAAGTAAGTAGCAGCAAGTGGTCAGGGACTGAGAGTAGCAAAGTTGGAGAGTCATCTCAGCAGGTGGAAATCCAGGATACCTCTTCTGTCCAAACAGCTCCTACCTCAGATATAATCCCATCAGCCCCACCAGTTGCAGATGATAGTCTAGATGCAGCTCGTATTCACTATCCTTCAATTGATTTCAGTCCTATTGATATCCCATCCCCAAGCCTTGAAAGCAAACCTGCTAAAGTTGAAGAGAAGAAAGGTGAAAGCGGTTCATGTGTGATTTGTTTGGATGCTCCAGTTGAAGGAGCTTGCATCCCTTGTGGACATATGGCTGGATGCATGTCCTGTTTGAAGGAGATTAAAGGCAAGAAATGGGGATGCCCCGTCTGTCGAGCCAAGATAGACCAGGTTATAAGGCTGTATGCTGTATGA

Protein Analysis

508

Amino Acids

54.44

Weight (kDa)

8.23

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 7 - 68 7.5e-07 Ankyrin repeats (3 copies)
Ank_5 PF13857 59 - 115 1.8e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 77 - 126 7.8e-07 Ankyrin repeats (3 copies)
Ank PF00023 77 - 105 1.4e-06 Ankyrin repeat
zf-C3HC4_3 PF13920 453 - 501 1.1e-13 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 456 - 501 1e-05 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1026, 1505
AarI CACCTGC 1 cut(s) 1153
Acc36I ACCTGC 2 cut(s) 1153, 1336
AccB1I GGYRCC 2 cut(s) 874, 898
AccII CGCG 1 cut(s) 375
AciI CCGC 8 cut(s) 137, 373, 415, 657, 679, 908, 1089, 1359
AclWI GGATC 2 cut(s) 623, 980
AcoI YGGCCR 1 cut(s) 927
AcsI RAATTY 1 cut(s) 813
AcuI CTGAAG 2 cut(s) 618, 770
AcvI CACGTG 1 cut(s) 743
AcyI GRCGYC 1 cut(s) 875
AfaI GTAC 3 cut(s) 447, 695, 1080
AfiI CCNNNNNNNGG 2 cut(s) 570, 1394
AflIII ACRYGT 2 cut(s) 740, 742
AgsI TTSAA 8 cut(s) 182, 468, 526, 1278, 1319, 1340, 1394, 1444
AjnI CCWGG 5 cut(s) 96, 151, 430, 1173, 1497
AleI CACNNNNGTG 1 cut(s) 823
AluBI AGCT 9 cut(s) 48, 248, 535, 758, 860, 884, 1199, 1259, 1400
AluI AGCT 9 cut(s) 48, 248, 535, 758, 860, 884, 1199, 1259, 1400
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 2 cut(s) 623, 980
AlwNI CAGNNNCTG 1 cut(s) 1130
AoxI GGCC 5 cut(s) 94, 138, 256, 927, 1035
ApoI RAATTY 1 cut(s) 813
AspLEI GCGC 2 cut(s) 377, 877
AspS9I GGNCC 2 cut(s) 428, 1035
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 983, 1364
AvaII GGWCC 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 360
BalI TGGCCA 1 cut(s) 929
BanI GGYRCC 2 cut(s) 874, 898
BbrPI CACGTG 1 cut(s) 743
BccI CCATC 3 cut(s) 42, 1228, 1312
BceAI ACGGC 2 cut(s) 888, 912
BcgI CGANNNNNNTGC 4 cut(s) 431, 465, 679, 713
BciT130I CCWGG 5 cut(s) 98, 153, 432, 1175, 1499
BciVI GTATCC 2 cut(s) 555, 1171
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 4 cut(s) 260, 345, 711, 1250
BfmI CTRYAG 3 cut(s) 8, 79, 759
BfoI RGCGCY 1 cut(s) 878
BfuAI ACCTGC 2 cut(s) 1153, 1336
BfuI GTATCC 2 cut(s) 555, 1171
BglI GCCNNNNNGGC 1 cut(s) 707
BmcAI AGTACT 1 cut(s) 447
Bme1390I CCNGG 6 cut(s) 98, 153, 213, 432, 1175, 1499
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 428, 1035
BmiI GGNNCC 3 cut(s) 876, 900, 1042
BmrFI CCNGG 6 cut(s) 98, 153, 213, 432, 1175, 1499
BmsI GCATC 9 cut(s) 550, 730, 983, 1022, 1243, 1372, 1413, 1418, 1460
BpmI CTGGAG 4 cut(s) 119, 849, 873, 1371
BpuMI CCSGG 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 875
BsaJI CCNNGG 4 cut(s) 152, 211, 569, 930
Bsc4I CCNNNNNNNGG 2 cut(s) 570, 1394
Bse1I ACTGG 3 cut(s) 1017, 1232, 1388
Bse3DI GCAATG 1 cut(s) 805
BseBI CCWGG 5 cut(s) 98, 153, 432, 1175, 1499
BseDI CCNNGG 4 cut(s) 152, 211, 569, 930
BseGI GGATG 8 cut(s) 565, 974, 1013, 1304, 1387, 1404, 1433, 1475
BseLI CCNNNNNNNGG 2 cut(s) 570, 1394
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 4 cut(s) 470, 1122, 1172, 1221
BseNI ACTGG 3 cut(s) 1017, 1232, 1388
BseRI GAGGAG 2 cut(s) 222, 444
BseSI GKGCMC 1 cut(s) 360
BseYI CCCAGC 2 cut(s) 224, 856
BsgI GTGCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 375
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 5 cut(s) 96, 140, 258, 929, 1037
BshNI GGYRCC 2 cut(s) 874, 898
BsiEI CGRYCG 1 cut(s) 217
BsiSI CCGG 2 cut(s) 213, 1038
BslFI GGGAC 3 cut(s) 18, 241, 1141
BslI CCNNNNNNNGG 2 cut(s) 570, 1394
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 3 cut(s) 18, 241, 1141
BsnI GGCC 5 cut(s) 96, 140, 258, 929, 1037
Bsp1286I GDGCHC 1 cut(s) 360
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 2 cut(s) 628, 985
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 8 cut(s) 137, 373, 415, 657, 679, 908, 1089, 1359
BspANI GGCC 5 cut(s) 96, 140, 258, 929, 1037
BspCNI CTCAG 4 cut(s) 469, 1123, 1171, 1220
BspFNI CGCG 1 cut(s) 375
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 876, 900, 1042
BspMAI CTGCAG 3 cut(s) 12, 83, 763
BspMI ACCTGC 2 cut(s) 1153, 1336
BspPI GGATC 2 cut(s) 623, 980
BspT107I GGYRCC 2 cut(s) 874, 898
BsrDI GCAATG 1 cut(s) 805
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 3 cut(s) 1017, 1232, 1388
BssECI CCNNGG 4 cut(s) 152, 211, 569, 930
BssMI GATC 2 cut(s) 628, 985
BssNI GRCGYC 1 cut(s) 875
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 5 cut(s) 98, 153, 432, 1175, 1499
Bst4CI ACNGT 4 cut(s) 89, 323, 577, 1061
Bst6I CTCTTC 2 cut(s) 1189, 1335
BstACI GRCGYC 1 cut(s) 875
BstAPI GCANNNNNTGC 1 cut(s) 804
BstAUI TGTACA 1 cut(s) 693
BstBAI YACGTR 1 cut(s) 743
BstC8I GCNNGC 4 cut(s) 94, 537, 805, 1402
BstDEI CTNAG 5 cut(s) 456, 731, 1131, 1158, 1207
BstDSI CCRYGG 2 cut(s) 569, 930
BstF5I GGATG 8 cut(s) 565, 974, 1013, 1304, 1387, 1404, 1433, 1475
BstFNI CGCG 1 cut(s) 375
BstH2I RGCGCY 1 cut(s) 878
BstHHI GCGC 2 cut(s) 377, 877
BstKTI GATC 2 cut(s) 631, 988
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 628, 985
BstMCI CGRYCG 1 cut(s) 217
BstNI CCWGG 5 cut(s) 98, 153, 432, 1175, 1499
BstNSI RCATGY 3 cut(s) 694, 807, 1435
BstSCI CCNGG 6 cut(s) 96, 151, 211, 430, 1173, 1497
BstSFI CTRYAG 3 cut(s) 8, 79, 759
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 1 cut(s) 375
BsuI GTATCC 2 cut(s) 555, 1171
BsuRI GGCC 5 cut(s) 96, 140, 258, 929, 1037
BtgI CCRYGG 2 cut(s) 569, 930
BtgZI GCGATG 1 cut(s) 682
BtsCI GGATG 8 cut(s) 565, 974, 1013, 1304, 1387, 1404, 1433, 1475
BveI ACCTGC 2 cut(s) 1153, 1336
Cac8I GCNNGC 4 cut(s) 94, 537, 805, 1402
CaiI CAGNNNCTG 1 cut(s) 1130
CciI TCATGA 1 cut(s) 309
CfoI GCGC 2 cut(s) 377, 877
Cfr13I GGNCC 2 cut(s) 428, 1035
CsiI ACCWGGT 1 cut(s) 1497
Csp6I GTAC 3 cut(s) 446, 694, 1079
CviQI GTAC 3 cut(s) 446, 694, 1079
DdeI CTNAG 5 cut(s) 456, 731, 1131, 1158, 1207
DinI GGCGCC 1 cut(s) 876
DpnI GATC 2 cut(s) 630, 987
DpnII GATC 2 cut(s) 628, 985
EaeI YGGCCR 1 cut(s) 927
Eam1104I CTCTTC 2 cut(s) 1189, 1335
EarI CTCTTC 2 cut(s) 1189, 1335
EciI GGCGGA 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 930
Eco147I AGGCCT 2 cut(s) 96, 258
Eco32I GATATC 1 cut(s) 1300
Eco47I GGWCC 1 cut(s) 428
Eco57I CTGAAG 2 cut(s) 618, 770
Eco72I CACGTG 1 cut(s) 743
EcoRI GAATTC 1 cut(s) 813
EcoRII CCWGG 5 cut(s) 96, 151, 430, 1173, 1497
EcoRV GATATC 1 cut(s) 1300
EcoT14I CCWWGG 1 cut(s) 930
EcoT22I ATGCAT 2 cut(s) 805, 1433
EgeI GGCGCC 1 cut(s) 876
EheI GGCGCC 1 cut(s) 876
ErhI CCWWGG 1 cut(s) 930
Esp3I CGTCTC 1 cut(s) 78
FaqI GGGAC 3 cut(s) 18, 241, 1141
FauI CCCGC 1 cut(s) 408
FauNDI CATATG 1 cut(s) 1419
FokI GGATG 8 cut(s) 572, 961, 1000, 1291, 1391, 1394, 1440, 1482
FspBI CTAG 4 cut(s) 260, 345, 711, 1250
GlaI GCGC 2 cut(s) 376, 876
GsaI CCCAGC 2 cut(s) 228, 860
GsuI CTGGAG 4 cut(s) 119, 849, 873, 1371
HaeII RGCGCY 1 cut(s) 878
HaeIII GGCC 5 cut(s) 96, 140, 258, 929, 1037
HapII CCGG 2 cut(s) 213, 1038
HhaI GCGC 2 cut(s) 377, 877
Hin1I GRCGYC 1 cut(s) 875
Hin6I GCGC 2 cut(s) 375, 875
HinP1I GCGC 2 cut(s) 375, 875
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 3 cut(s) 229, 643, 1151
HpaII CCGG 2 cut(s) 213, 1038
HphI GGTGA 2 cut(s) 983, 1364
Hpy166II GTNNAC 3 cut(s) 199, 1079, 1415
Hpy188I TCNGA 3 cut(s) 628, 1050, 1210
Hpy188III TCNNGA 8 cut(s) 310, 335, 440, 468, 602, 647, 983, 1250
Hpy8I GTNNAC 3 cut(s) 199, 1079, 1415
HpyAV CCTTC 6 cut(s) 56, 642, 998, 1284, 1388, 1438
HpyCH4III ACNGT 4 cut(s) 89, 323, 577, 1061
HpyCH4IV ACGT 3 cut(s) 195, 339, 742
HpyF3I CTNAG 5 cut(s) 456, 731, 1131, 1158, 1207
HpySE526I ACGT 3 cut(s) 195, 339, 742
Hsp92I GRCGYC 1 cut(s) 875
HspAI GCGC 2 cut(s) 375, 875
KasI GGCGCC 1 cut(s) 874
Kzo9I GATC 2 cut(s) 628, 985
LweI GCATC 9 cut(s) 550, 730, 983, 1022, 1243, 1372, 1413, 1418, 1460
MabI ACCWGGT 1 cut(s) 1497
MaeI CTAG 4 cut(s) 260, 345, 711, 1250
MaeII ACGT 3 cut(s) 195, 339, 742
MaeIII GTNAC 3 cut(s) 615, 842, 1061
MalI GATC 2 cut(s) 630, 987
MboI GATC 2 cut(s) 628, 985
MboII GAAGA 7 cut(s) 275, 617, 696, 926, 1176, 1352, 1357
MfeI CAATTG 2 cut(s) 378, 1278
MhlI GDGCHC 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 929
MluCI AATT 4 cut(s) 275, 378, 813, 1278
MluNI TGGCCA 1 cut(s) 929
Mly113I GGCGCC 1 cut(s) 875
MlyI GAGTC 2 cut(s) 223, 1160
MmeI TCCRAC 2 cut(s) 510, 1126
Mox20I TGGCCA 1 cut(s) 929
Mph1103I ATGCAT 2 cut(s) 805, 1433
MscI TGGCCA 1 cut(s) 929
MseI TTAA 4 cut(s) 69, 273, 305, 1452
MslI CAYNNNNRTG 2 cut(s) 363, 823
Msp20I TGGCCA 1 cut(s) 929
MspA1I CMGCKG 6 cut(s) 48, 758, 860, 884, 908, 1091
MspI CCGG 2 cut(s) 213, 1038
MspR9I CCNGG 6 cut(s) 98, 153, 213, 432, 1175, 1499
MunI CAATTG 2 cut(s) 378, 1278
MvaI CCWGG 5 cut(s) 98, 153, 432, 1175, 1499
MvnI CGCG 1 cut(s) 375
NarI GGCGCC 1 cut(s) 875
NciI CCSGG 1 cut(s) 213
NcoI CCATGG 1 cut(s) 930
NdeI CATATG 1 cut(s) 1419
NdeII GATC 2 cut(s) 628, 985
NlaIV GGNNCC 3 cut(s) 876, 900, 1042
NsiI ATGCAT 2 cut(s) 805, 1433
NspI RCATGY 3 cut(s) 694, 807, 1435
OliI CACNNNNGTG 1 cut(s) 823
PaeI GCATGC 1 cut(s) 807
PagI TCATGA 1 cut(s) 309
PaqCI CACCTGC 1 cut(s) 1153
PceI AGGCCT 2 cut(s) 96, 258
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 214
PfeI GAWTC 1 cut(s) 643
PfoI TCCNGGA 2 cut(s) 430, 1173
PleI GAGTC 2 cut(s) 223, 1159
PluTI GGCGCC 1 cut(s) 878
PmaCI CACGTG 1 cut(s) 743
PmlI CACGTG 1 cut(s) 743
PpsI GAGTC 2 cut(s) 223, 1159
Ppu21I YACGTR 1 cut(s) 743
PsiI TTATAA 2 cut(s) 1026, 1505
Psp6I CCWGG 5 cut(s) 96, 151, 430, 1173, 1497
PspCI CACGTG 1 cut(s) 743
PspFI CCCAGC 2 cut(s) 224, 856
PspGI CCWGG 5 cut(s) 96, 151, 430, 1173, 1497
PspN4I GGNNCC 3 cut(s) 876, 900, 1042
PspPI GGNCC 2 cut(s) 428, 1035
PsrI GAACNNNNNNTAC 2 cut(s) 600, 632
PstI CTGCAG 3 cut(s) 12, 83, 763
PstNI CAGNNNCTG 1 cut(s) 1130
PvuII CAGCTG 4 cut(s) 48, 758, 860, 884
RsaI GTAC 3 cut(s) 447, 695, 1080
RsaNI GTAC 3 cut(s) 446, 694, 1079
RseI CAYNNNNRTG 2 cut(s) 363, 823
SaqAI TTAA 4 cut(s) 69, 273, 305, 1452
Sau3AI GATC 2 cut(s) 628, 985
Sau96I GGNCC 2 cut(s) 428, 1035
ScaI AGTACT 1 cut(s) 447
SchI GAGTC 2 cut(s) 223, 1160
ScrFI CCNGG 6 cut(s) 98, 153, 213, 432, 1175, 1499
SduI GDGCHC 1 cut(s) 360
SexAI ACCWGGT 1 cut(s) 1497
SfaNI GCATC 9 cut(s) 550, 730, 983, 1022, 1243, 1372, 1413, 1418, 1460
SfcI CTRYAG 3 cut(s) 8, 79, 759
SfoI GGCGCC 1 cut(s) 876
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 2 cut(s) 363, 823
SphI GCATGC 1 cut(s) 807
Sse9I AATT 4 cut(s) 275, 378, 813, 1278
SseBI AGGCCT 2 cut(s) 96, 258
SsiI CCGC 8 cut(s) 137, 373, 415, 657, 679, 908, 1089, 1359
SspDI GGCGCC 1 cut(s) 874
SspMI CTAG 4 cut(s) 260, 345, 711, 1250
StuI AGGCCT 2 cut(s) 96, 258
StyD4I CCNGG 6 cut(s) 96, 151, 211, 430, 1173, 1497
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 4 cut(s) 89, 323, 577, 1061
TaiI ACGT 3 cut(s) 198, 342, 745
TaqI TCGA 4 cut(s) 17, 60, 441, 1483
TasI AATT 4 cut(s) 275, 378, 813, 1278
TatI WGTACW 2 cut(s) 445, 693
TauI GCSGC 3 cut(s) 140, 911, 1091
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 4 cut(s) 69, 273, 305, 1452
Tru9I TTAA 4 cut(s) 69, 273, 305, 1452
TspDTI ATGAA 4 cut(s) 326, 780, 1017, 1353
TspGWI ACGGA 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 1 cut(s) 813
XbaI TCTAGA 1 cut(s) 1249
XceI RCATGY 3 cut(s) 694, 807, 1435
XspI CTAG 4 cut(s) 260, 345, 711, 1250
ZrmI AGTACT 1 cut(s) 447
Zsp2I ATGCAT 2 cut(s) 805, 1433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.