pycom16g18830

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002586
Physical Location & Seq
Reverse (-)
15619983 .. 15621207
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 864 bp
ATGTCACATTTTCTTGCTCCAATTTCCCCATACAATTCCTACTTAAACCCACTTTCCATCTCCCTCTCCTTGTACCTCAAGCCATTGAAAATGGATAGAAATCAAAGCTTCTTCTTTTGTTTTTTGATTCTTTCTGTTGCGATTGCAGCCGCCGAGTCGCGGTGGAACATATTGGATCACAGAACCAAGAATGGACGGGACCTCAGCTTGAGAAACTACTGCGAGAGTTGGAGGATGAATGTCGAGCTCCACAACATCAGAGAGTTCGAAACCGTGCCTCAAGAGTGCATTGGATACGTTGGAAAATACATTACTTCAACTCAGTACAAGGTGGACTCTGAGAGGGCGGTCGAGGAGGCGCTTGTGTACCTAAGCACTAGCTGCAATCTGAAGAAAGATGGTAGAGATGCATGGATTTTCGACATTGATGATACGCTCCTTTCGACTGTGCCTTACTACAAGAAACGAAATTTCGGGGGTGAGAAGTTGAACCTGACTTCTCTGGAGGAATGGATGAGCTGTGGAAAGGCACCTGCTTTAGAGAACTCACTCAAACTCTTCAATGAGATGAAAGGCAGAGGGTTGCAGATCATTTTGGTTTCTTCAAGGAGGGAGCTTCTAAGATCACCCACAATTGATAACCTTGTCAATGTTGGCTATTATGGTTGGACAAGCCTTATACTGAGTGGTACTGACGATGAACTGGGAGGAGTGCAGAATTACAAGAGTAGAGTGAGAAAGCAATTGATTGCCGATGGTTACACCATTTGGGGCATTGCGGGAGACCAATACAGCAGCATCAATGGACTTCCTACCGCCAAAAGGACATTCAAACTCCCAAACCCAATGTACTACACTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

288

Amino Acids

32.88

Weight (kDa)

8.65

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 70 - 286 8.7e-71 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 541
AccB1I GGYRCC 1 cut(s) 529
AccII CGCG 1 cut(s) 160
AciI CCGC 5 cut(s) 150, 160, 347, 779, 816
AclWI GGATC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 5 cut(s) 74, 326, 368, 691, 851
AfiI CCNNNNNNNGG 2 cut(s) 159, 822
AgsI TTSAA 6 cut(s) 88, 318, 490, 562, 606, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
AluBI AGCT 6 cut(s) 108, 207, 247, 381, 519, 616
AluI AGCT 6 cut(s) 108, 207, 247, 381, 519, 616
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 777
AlwI GGATC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 146, 381, 795
ApoI RAATTY 1 cut(s) 469
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 491, 618
AsuII TTCGAA 1 cut(s) 267
AvaII GGWCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 158, 368, 807
BccI CCATC 3 cut(s) 65, 392, 749
BciVI GTATCC 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 777
BfaI CTAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 4 cut(s) 147, 150, 382, 796
BlsI GCNGC 4 cut(s) 148, 151, 383, 797
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 200, 531
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 2 cut(s) 397, 807
BmuI ACTGGG 1 cut(s) 713
BpmI CTGGAG 1 cut(s) 524
Bpu10I CCTNAGC 2 cut(s) 203, 371
Bpu14I TTCGAA 1 cut(s) 267
BpuEI CTTGAG 3 cut(s) 62, 229, 264
BsaBI GATNNNNATC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 777
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 822
Bse1I ACTGG 1 cut(s) 708
Bse3DI GCAATG 1 cut(s) 774
Bse8I GATNNNNATC 1 cut(s) 99
BseGI GGATG 2 cut(s) 240, 519
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 159, 822
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 4 cut(s) 217, 330, 335, 674
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 2 cut(s) 368, 723
BseXI GCAGC 3 cut(s) 158, 368, 807
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 529
BsiEI CGRYCG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 159, 822
BsmAI GTCTC 1 cut(s) 777
BsmFI GGGAC 1 cut(s) 212
Bso31I GGTCTC 1 cut(s) 777
Bsp119I TTCGAA 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 175, 588, 623
BspACI CCGC 5 cut(s) 150, 160, 347, 779, 816
BspCNI CTCAG 4 cut(s) 216, 331, 334, 675
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 200, 531
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 1 cut(s) 183
BspT104I TTCGAA 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 777
BsrDI GCAATG 1 cut(s) 774
BsrI ACTGG 1 cut(s) 708
BssMI GATC 3 cut(s) 175, 588, 623
Bst4CI ACNGT 2 cut(s) 274, 448
Bst6I CTCTTC 1 cut(s) 563
BstAPI GCANNNNNTGC 1 cut(s) 381
BstBI TTCGAA 1 cut(s) 267
BstDEI CTNAG 6 cut(s) 203, 321, 339, 371, 620, 683
BstF5I GGATG 2 cut(s) 240, 519
BstFNI CGCG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 3 cut(s) 178, 591, 626
BstMAI GTCTC 1 cut(s) 777
BstMBI GATC 3 cut(s) 175, 588, 623
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 146, 381
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 3 cut(s) 158, 368, 807
BsuI GTATCC 1 cut(s) 287
BtsCI GGATG 2 cut(s) 240, 519
BveI ACCTGC 1 cut(s) 541
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 5 cut(s) 73, 325, 367, 690, 850
CviAII CATG 1 cut(s) 411
CviQI GTAC 5 cut(s) 73, 325, 367, 690, 850
DdeI CTNAG 6 cut(s) 203, 321, 339, 371, 620, 683
DpnI GATC 3 cut(s) 177, 590, 625
DpnII GATC 3 cut(s) 175, 588, 623
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 777
Eco47I GGWCC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 1 cut(s) 414
FaiI YATR 5 cut(s) 31, 170, 412, 663, 680
FaqI GGGAC 1 cut(s) 212
FatI CATG 1 cut(s) 410
FauI CCCGC 1 cut(s) 772
Fnu4HI GCNGC 4 cut(s) 147, 150, 382, 796
FokI GGATG 2 cut(s) 247, 526
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 147, 150, 382, 796
FspBI CTAG 1 cut(s) 378
GlaI GCGC 1 cut(s) 360
GluI GCNGC 4 cut(s) 147, 150, 382, 796
GsuI CTGGAG 1 cut(s) 524
HaeII RGCGCY 1 cut(s) 362
HhaI GCGC 1 cut(s) 361
Hin1II CATG 1 cut(s) 414
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 3 cut(s) 127, 155, 335
HphI GGTGA 2 cut(s) 491, 618
Hpy166II GTNNAC 2 cut(s) 334, 367
Hpy188I TCNGA 4 cut(s) 260, 340, 390, 863
Hpy188III TCNNGA 2 cut(s) 281, 503
Hpy8I GTNNAC 2 cut(s) 334, 367
HpyCH4III ACNGT 2 cut(s) 274, 448
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 6 cut(s) 146, 288, 384, 410, 586, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 381
HpyF3I CTNAG 6 cut(s) 203, 321, 339, 371, 620, 683
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 414
HspAI GCGC 1 cut(s) 359
Kzo9I GATC 3 cut(s) 175, 588, 623
LmnI GCTCC 4 cut(s) 22, 252, 441, 613
LpnPI CCDG 4 cut(s) 488, 506, 546, 689
Lsp1109I GCAGC 3 cut(s) 158, 368, 807
LweI GCATC 2 cut(s) 397, 807
MaeI CTAG 1 cut(s) 378
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 3, 758
MalI GATC 3 cut(s) 177, 590, 625
MboI GATC 3 cut(s) 175, 588, 623
MboII GAAGA 4 cut(s) 103, 403, 550, 594
MfeI CAATTG 2 cut(s) 633, 743
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 6 cut(s) 21, 34, 469, 633, 718, 743
MlyI GAGTC 2 cut(s) 164, 329
MmeI TCCRAC 3 cut(s) 209, 280, 647
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 1 cut(s) 44
MunI CAATTG 2 cut(s) 633, 743
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 146, 381
NdeII GATC 3 cut(s) 175, 588, 623
NlaIII CATG 1 cut(s) 414
NlaIV GGNNCC 2 cut(s) 200, 531
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 412
NspV TTCGAA 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 440
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 4 cut(s) 148, 151, 383, 797
PleI GAGTC 2 cut(s) 163, 329
PpsI GAGTC 2 cut(s) 163, 329
PpuMI RGGWCCY 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 200, 531
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
RsaI GTAC 5 cut(s) 74, 326, 368, 691, 851
RsaNI GTAC 5 cut(s) 73, 325, 367, 690, 850
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 4 cut(s) 147, 150, 382, 796
Sau3AI GATC 3 cut(s) 175, 588, 623
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 164, 329
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 2 cut(s) 397, 807
SfuI TTCGAA 1 cut(s) 267
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 3 cut(s) 77, 208, 279
SmoI CTYRAG 3 cut(s) 77, 208, 279
Sse9I AATT 6 cut(s) 21, 34, 469, 633, 718, 743
SsiI CCGC 5 cut(s) 150, 160, 347, 779, 816
SspMI CTAG 1 cut(s) 378
SstI GAGCTC 1 cut(s) 249
TaaI ACNGT 2 cut(s) 274, 448
TaiI ACGT 1 cut(s) 300
TaqI TCGA 5 cut(s) 243, 267, 351, 420, 443
TasI AATT 6 cut(s) 21, 34, 469, 633, 718, 743
TatI WGTACW 2 cut(s) 324, 849
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 146, 381, 795
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 251, 584, 714
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 469
XspI CTAG 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.