Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005549

Physical Location & Seq

Genomic Coordinates Reverse (-)

18500693 .. 18502699

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATACTCTTGGAGCACTAGCATTGGCTACGGAGCCACCTACAGACCACTTGATGGACAGACCCCCTGTTGGTCGAAGAGAGCCGCTCATAACAAATATAATGTGGAGGAACTTGTTGGTTCAGGCTTTCTACCAAGTCACTGTCCTACTTGTCCTCAACTTCCGAGGAATAAGTATACTGAAGCTACATGGTTCCAATGCTAACACAGTGAAGAATACTTTGATATTCAATACATTTGTCCTATGTCAGATTTTCAATGAATTCAATGCTCGAAAGCCTGATGAGTTCAATATATTCAAGGGGATAACCAAGAACTACCTTTTTATAGGAATAGTGACAGTAACTCTTGTACTTCAGATTATCATAGTCGAGTTCCTTGGGAAGTTCACTAAAACAAAACCACTTACTTGGAATCTTTGGCTGATTTCAGCTGTAATAGCTTTTATCAGTTGGCCCCTTGCTGTTCTCGGGAAGCTGATTCCGGTTCCAGAAACTCCTCTCTTCAAGTATTTTACAAGAATGATCCCTGGGCGAAGAAACAGTCCAGAGGGTAGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

188

Amino Acids

21.26

Weight (kDa)

9.94

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	1 - 161	5.4e-38	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1081700.v1.1
pyrus_communis	pycom12g06770 pycom13g21210 pycom14g06540 pycom14g06560 pycom16g20650
rosa_chinensis	RchiOBHm_Chr3g0483401 RchiOBHm_Chr6g0264021
rosa_laevigata	RLG00000023286
rosa_multiflora	Rmu_sc0006349.1_g000007 Rmu_sc0007793.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031200 Rroxscaffold_4G00300190 Rroxscaffold_4G00318650 Rroxscaffold_6G00398380
rosa_rugosa	Rorug03G0205700 Rorug03G0205800
rosa_samantha	Rh1DG033100 Rh2AG476200 Rh3AG254200 Rh3BG291300 Rh3CG288500 Rh3CG288600 Rh3DG284300 Rh3DG284400
rosa_wichuraiana	Rw0G023730 Rw3G022950 Rw3G022970 Rw6G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	178
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	520
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	2 cut(s)	203, 341
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	55, 71
AgsI	TTSAA	6 cut(s)	232, 259, 268, 292, 301, 508
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	4 cut(s)	187, 434, 443, 478
AluI	AGCT	4 cut(s)	187, 434, 443, 478
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	455
ApoI	RAATTY	1 cut(s)	263
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AspS9I	GGNCC	1 cut(s)	456
AvaI	CYCGRG	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	19
BccI	CCATC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	531
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	531
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	4 cut(s)	36, 196, 458, 489
BmrFI	CCNGG	1 cut(s)	531
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BsaJI	CCNNGG	4 cut(s)	166, 379, 529, 530
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 71
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	4 cut(s)	166, 379, 529, 530
BseLI	CCNNNNNNNGG	2 cut(s)	55, 71
BseRI	GAGGAG	1 cut(s)	489
BshFI	GGCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	55, 71
BsnI	GGCC	1 cut(s)	457
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	525
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	457
BspLI	GGNNCC	4 cut(s)	36, 196, 458, 489
BspPI	GGATC	1 cut(s)	520
BsrBI	CCGCTC	1 cut(s)	88
BssECI	CCNNGG	4 cut(s)	166, 379, 529, 530
BssMI	GATC	1 cut(s)	525
BssNAI	GTATAC	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	379
Bst1107I	GTATAC	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	4 cut(s)	145, 211, 343, 545
Bst6I	CTCTTC	2 cut(s)	73, 509
BstKTI	GATC	1 cut(s)	528
BstMBI	GATC	1 cut(s)	525
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	411
BstZ17I	GTATAC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	141, 216
Cfr13I	GGNCC	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	1 cut(s)	191
CviQI	GTAC	1 cut(s)	353
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	73, 509
EarI	CTCTTC	2 cut(s)	73, 509
Eco130I	CCWWGG	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	203, 341
Eco88I	CYCGRG	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	1 cut(s)	194
FaiI	YATR	8 cut(s)	92, 101, 179, 192, 247, 296, 329, 368
FatI	CATG	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	1 cut(s)	485
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	2 cut(s)	415, 481
HpaII	CCGG	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	179, 390
Hpy188I	TCNGA	3 cut(s)	167, 252, 360
Hpy188III	TCNNGA	3 cut(s)	472, 491, 548
Hpy8I	GTNNAC	2 cut(s)	179, 390
HpyCH4III	ACNGT	4 cut(s)	145, 211, 343, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	525
LmnI	GCTCC	2 cut(s)	14, 34
LpnPI	CCDG	7 cut(s)	81, 110, 294, 498, 504, 516, 543
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	3 cut(s)	139, 337, 343
MalI	GATC	1 cut(s)	527
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	1 cut(s)	525
MboII	GAAGA	4 cut(s)	90, 226, 496, 549
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	1 cut(s)	263
MnlI	CCTC	5 cut(s)	102, 161, 167, 510, 544
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeII	GATC	1 cut(s)	525
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	4 cut(s)	36, 196, 458, 489
NmuCI	GTSAC	2 cut(s)	139, 337
PasI	CCCWGGG	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	415, 481
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	4 cut(s)	36, 196, 458, 489
PspPI	GGNCC	1 cut(s)	456
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	6 cut(s)	43, 189, 324, 436, 445, 480
SfcI	CTRYAG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	145, 211, 343, 545
TaqI	TCGA	3 cut(s)	76, 274, 372
TasI	AATT	1 cut(s)	263
TatI	WGTACW	1 cut(s)	352
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	2 cut(s)	415, 481
TscAI	CASTG	2 cut(s)	148, 216
TseFI	GTSAC	2 cut(s)	139, 337
Tsp45I	GTSAC	2 cut(s)	139, 337
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	148, 216
Van91I	CCANNNNNTGG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.