Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Forward (+)

574001 .. 583826

Gene Structure 9826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGGCGAGGGAAGGTGCAGCTGAAGCGAATCGACGACAAGATCAGGCGGCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTGAGCTGTCGGTGCTCTGCGGGGTGGAGGTCGGCCTCGTCATCTTCTCCACCAAGGGGAGGCTCTACGAGTTCTGTAGCGGCTCGAGTTTTGCAAAGCTTCTGGAGCGTTACCAGCAACATAATGCTGAGGAAATTGCTGCTTCCAAGAATGCTGGTGGTACTGACAAGGTTAGTCAAGCGTTTTACCCTGCACAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

100

Amino Acids

11.07

Weight (kDa)

10.07

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.9e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	49, 70, 78, 117, 177
AcuI	CTGAAG	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	153, 156
AluBI	AGCT	3 cut(s)	22, 103, 196
AluI	AGCT	3 cut(s)	22, 103, 196
Alw21I	GWGCWC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	19, 236
AvaI	CYCGRG	1 cut(s)	181
BbrPI	CACGTG	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	31, 223
BclI	TGATCA	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	4 cut(s)	20, 50, 178, 237
BlsI	GCNGC	4 cut(s)	21, 51, 179, 238
BmeT110I	CYCGRG	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 156
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	153, 156
BseMII	CTCAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	31, 223
BsgI	GTGCAG	2 cut(s)	38, 273
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	153, 156
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	42, 84
BspACI	CCGC	5 cut(s)	49, 70, 78, 117, 177
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	42, 84
BssT1I	CCWWGG	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	225
BstKTI	GATC	2 cut(s)	45, 87
BstMBI	GATC	2 cut(s)	42, 84
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 109, 202, 211
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	31, 223
BsuRI	GGCC	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	258
CviJI	RGCY	7 cut(s)	22, 82, 103, 132, 160, 180, 196
CviKI_1	RGCY	7 cut(s)	22, 82, 103, 132, 160, 180, 196
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	44, 86
DpnII	GATC	2 cut(s)	42, 84
Eco130I	CCWWGG	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaiI	YATR	1 cut(s)	219
FauI	CCCGC	2 cut(s)	71, 110
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	20, 50, 178, 237
Fsp4HI	GCNGC	4 cut(s)	20, 50, 178, 237
GluI	GCNGC	4 cut(s)	20, 50, 178, 237
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	88, 200
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	7, 85
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	19, 191, 290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 109, 202, 211
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	42, 84
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	4 cut(s)	31, 185, 224, 237
Lsp1109I	GCAGC	2 cut(s)	31, 223
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	55, 206
MalI	GATC	2 cut(s)	44, 86
MboI	GATC	2 cut(s)	42, 84
MboII	GAAGA	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	231, 295
MnlI	CCTC	4 cut(s)	118, 143, 150, 220
MseI	TTAA	1 cut(s)	298
MspA1I	CMGCKG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	253
MwoI	GCNNNNNNNGC	4 cut(s)	25, 109, 202, 211
NdeII	GATC	2 cut(s)	42, 84
NmuCI	GTSAC	1 cut(s)	55
PaeR7I	CTCGAG	1 cut(s)	181
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	4 cut(s)	21, 51, 179, 238
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	98
PspCI	CACGTG	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	298
SatI	GCNGC	4 cut(s)	20, 50, 178, 237
Sau3AI	GATC	2 cut(s)	42, 84
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	8 cut(s)	18, 24, 62, 100, 105, 129, 198, 270
SfcI	CTRYAG	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	181
SlaI	CTCGAG	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	231, 295
SsiI	CCGC	5 cut(s)	49, 70, 78, 117, 177
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	33, 182
TasI	AATT	2 cut(s)	231, 295
TauI	GCSGC	2 cut(s)	52, 180
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	19, 236
Tsp45I	GTSAC	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.