Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Forward (+)

584490 .. 586969

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATTCAAAGTGATATAGAAGCACAAGACATTGATAATCTAGATGTTCCAGAGCTCACCAAGCTTGAGGAAGAATTGGATGCAGTTTTAAGACAAACAAGATCAAGAAAGACACAGCTGATGATGGAAACCCTTACAGCTCTTATCGAGCAGGAAAAACAGCTGAAAGAAGAGAAGCTTCTCATGGAAAATGAGATTGCAGCAAAGGAGCAGCAGATCAGGGACCGAGCTGCCGACGAGGAACCGGCTCAGCAGAACACTTCCACCGCTAATAACACCACCATCACCTCCAACAACAACAACAACTGCAGCAGCGACGACGATGTTCCGGCCACCATGCTTCGTTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

118

Amino Acids

13.34

Weight (kDa)

4.27

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	9 - 65	1.4e-09	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	8
AluBI	AGCT	7 cut(s)	55, 64, 118, 140, 163, 178, 230
AluI	AGCT	7 cut(s)	55, 64, 118, 140, 163, 178, 230
Alw21I	GWGCWC	1 cut(s)	57
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	5 cut(s)	200, 211, 230, 309, 312
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	49, 277
AvaII	GGWCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	5 cut(s)	212, 217, 223, 321, 324
BccI	CCATC	2 cut(s)	118, 290
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	5 cut(s)	201, 212, 231, 310, 313
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	5 cut(s)	202, 213, 232, 311, 314
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	224, 243
BmsI	GCATC	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	244
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	263
BseXI	GCAGC	5 cut(s)	212, 217, 223, 321, 324
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	245, 329
BslFI	GGGAC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	101, 216
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	224, 243
BspMAI	CTGCAG	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	244
BssMI	GATC	2 cut(s)	101, 216
Bst6I	CTCTTC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	104, 219
BstMBI	GATC	2 cut(s)	101, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	5 cut(s)	212, 217, 223, 321, 324
BsuRI	GGCC	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	223
CviAII	CATG	2 cut(s)	184, 337
CviJI	RGCY	9 cut(s)	55, 64, 118, 140, 163, 178, 230, 248, 332
CviKI_1	RGCY	9 cut(s)	55, 64, 118, 140, 163, 178, 230, 248, 332
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	103, 218
DpnII	GATC	2 cut(s)	101, 216
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	2 cut(s)	187, 340
FaiI	YATR	3 cut(s)	17, 185, 338
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	183, 336
Fnu4HI	GCNGC	5 cut(s)	201, 212, 231, 310, 313
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	5 cut(s)	201, 212, 231, 310, 313
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	5 cut(s)	201, 212, 231, 310, 313
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	2 cut(s)	245, 329
Hin1II	CATG	2 cut(s)	187, 340
HindIII	AAGCTT	2 cut(s)	62, 176
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	245, 329
HphI	GGTGA	2 cut(s)	49, 277
Hpy188III	TCNNGA	3 cut(s)	41, 50, 105
Hpy99I	CGWCG	3 cut(s)	239, 320, 323
HpyCH4V	TGCA	3 cut(s)	83, 200, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	187, 340
Kzo9I	GATC	2 cut(s)	101, 216
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	5 cut(s)	63, 137, 205, 258, 342
Lsp1109I	GCAGC	5 cut(s)	212, 217, 223, 321, 324
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	41
MalI	GATC	2 cut(s)	103, 218
MboI	GATC	2 cut(s)	101, 216
MboII	GAAGA	2 cut(s)	83, 182
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	3 cut(s)	61, 232, 298
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	2 cut(s)	118, 163
MspI	CCGG	2 cut(s)	245, 329
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	2 cut(s)	101, 216
NlaIII	CATG	2 cut(s)	187, 340
NlaIV	GGNNCC	2 cut(s)	224, 243
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	5 cut(s)	202, 213, 232, 311, 314
Psp124BI	GAGCTC	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	224, 243
PspPI	GGNCC	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	311
PvuII	CAGCTG	2 cut(s)	118, 163
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	5 cut(s)	201, 212, 231, 310, 313
Sau3AI	GATC	2 cut(s)	101, 216
Sau96I	GGNCC	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	8 cut(s)	57, 66, 120, 142, 165, 180, 232, 290
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	57
TaqI	TCGA	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseI	GCWGC	5 cut(s)	200, 211, 230, 309, 312
VpaK11BI	GGWCC	1 cut(s)	223
XbaI	TCTAGA	1 cut(s)	40
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.