pycom17g02680

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001894
Physical Location & Seq
Forward (+)
1810542 .. 1811930
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 810 bp
ATGGCAAAGAATAAGCAGTTGGGATTGGTGGGAATATGCGACTTCTTAAGACCCTTTTTGAATTATTCGATTTTAAGGATACCTTTCTCAGAGACTTCGGCCTTGTTTGCAAGGCATCTAATATCGTCGATGGCCTCTCTTTGTTGCTCAATTCCTCTTGATGCACTGCCTGTCTTGAAAATGTTGACGGAATCTCTCGTTTATGTTCCACTCAGTAATTCAGAAGATTTTAGGAATTTCATATATTTTGCGGAATGTATGGTCGATGCATATACAGTGGTTCTGAGGAATTTGGCTGGAACTGGATTGCTGATCGCTGAGGCTTATCACTGTGGTTTGGAACTGTTTGATAAAATTCTTTTAATTTCTTCAGCTGGCCACATGCACTCTGGTTTGATTGAGCCCGTAGTTGAAATGTCCAAGCACTTATTGATTACCCAGAAAGATATTGGGTTGCCTTATGTGCCTAAAGTATCATCAGCTATGCTTACGTTATTTATTATCCTCGTTCAGTCAGAGCTTGAGCATGACCAACTATCTACATTGAAACTTCTCCACCTTCTTTTGAAGTGGAAGTATGGAGATGATGTTGTTCACAGAAATGCATGTCTTCTGAGCGAGGAGCTTTTATTCATATTCCCTGTCATTAGCCTACTGTCATCTACTTCTAAATATATCAAAGGAGCAGCAACAGATGTGCTTGTCCTGTTACAAAAACTCTTAGTAACAGTTTTGATAGCACCAAAGGATAAACCAGCAATTGAAGCAGGATATCCATCTCTAAGCACACCTGGATCTATTGTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

270

Amino Acids

29.71

Weight (kDa)

6.23

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3730 PF12530 4 - 209 1.7e-26 Focadhesin/RST1, DUF3730
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 802
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 3 cut(s) 235, 289, 354
AcuI CTGAAG 1 cut(s) 354
AflII CTTAAG 1 cut(s) 46
AgsI TTSAA 6 cut(s) 61, 178, 413, 547, 568, 764
AjnI CCWGG 1 cut(s) 790
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 4 cut(s) 374, 482, 520, 625
AluI AGCT 4 cut(s) 374, 482, 520, 625
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 802
AoxI GGCC 3 cut(s) 99, 132, 376
ApeKI GCWGC 1 cut(s) 686
ApoI RAATTY 3 cut(s) 235, 289, 354
BalI TGGCCA 1 cut(s) 378
BanII GRGCYC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 602
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 698
BccI CCATC 2 cut(s) 124, 784
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 86
BfrI CTTAAG 1 cut(s) 46
BfuI GTATCC 1 cut(s) 72
BisI GCNGC 1 cut(s) 687
BlsI GCNGC 1 cut(s) 688
Bme1390I CCNGG 1 cut(s) 792
BmrFI CCNGG 1 cut(s) 792
BmsI GCATC 3 cut(s) 124, 151, 256
BpiI GAAGAC 1 cut(s) 602
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 775
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bse1I ACTGG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 775
BseBI CCWGG 1 cut(s) 792
BseJI GATNNNNATC 1 cut(s) 775
BseMII CTCAG 5 cut(s) 102, 226, 275, 309, 605
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 635
BseXI GCAGC 1 cut(s) 698
BshFI GGCC 3 cut(s) 101, 134, 378
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 3 cut(s) 101, 134, 378
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 2 cut(s) 312, 794
BspACI CCGC 1 cut(s) 251
BspANI GGCC 3 cut(s) 101, 134, 378
BspCNI CTCAG 5 cut(s) 101, 225, 276, 310, 606
BspPI GGATC 1 cut(s) 802
BspTI CTTAAG 1 cut(s) 46
BsrI ACTGG 1 cut(s) 307
BssMI GATC 2 cut(s) 312, 794
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 5 cut(s) 277, 332, 345, 657, 730
BstAFI CTTAAG 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 7 cut(s) 88, 212, 284, 318, 614, 721, 782
BstKTI GATC 2 cut(s) 315, 797
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 312, 794
BstMWI GCNNNNNNNGC 3 cut(s) 107, 463, 764
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 2 cut(s) 385, 609
BstSCI CCNGG 1 cut(s) 790
BstV1I GCAGC 1 cut(s) 698
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 3 cut(s) 101, 134, 378
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 3 cut(s) 164, 282, 328
Cac8I GCNNGC 1 cut(s) 376
CviAII CATG 3 cut(s) 382, 527, 606
DdeI CTNAG 7 cut(s) 88, 212, 284, 318, 614, 721, 782
DpnI GATC 2 cut(s) 314, 796
DpnII GATC 2 cut(s) 312, 794
EaeI YGGCCR 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 405
Eco32I GATATC 1 cut(s) 773
Eco57I CTGAAG 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 790
EcoRV GATATC 1 cut(s) 773
EcoT22I ATGCAT 2 cut(s) 271, 607
EcoT38I GRGCYC 1 cut(s) 405
FaeI CATG 3 cut(s) 385, 530, 609
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FatI CATG 3 cut(s) 381, 526, 605
Fnu4HI GCNGC 1 cut(s) 687
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 1 cut(s) 687
GluI GCNGC 1 cut(s) 687
HaeIII GGCC 3 cut(s) 101, 134, 378
Hin1II CATG 3 cut(s) 385, 530, 609
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 186, 595
Hpy188I TCNGA 5 cut(s) 91, 223, 285, 517, 615
Hpy188III TCNNGA 2 cut(s) 158, 175
Hpy8I GTNNAC 2 cut(s) 186, 595
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 569
HpyCH4III ACNGT 5 cut(s) 277, 332, 345, 657, 730
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 5 cut(s) 110, 164, 269, 385, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 463, 764
HpyF3I CTNAG 7 cut(s) 88, 212, 284, 318, 614, 721, 782
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 3 cut(s) 385, 530, 609
Kzo9I GATC 2 cut(s) 312, 794
LmnI GCTCC 2 cut(s) 622, 683
Lsp1109I GCAGC 1 cut(s) 698
LweI GCATC 3 cut(s) 124, 151, 256
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 2 cut(s) 708, 724
MalI GATC 2 cut(s) 314, 796
MboI GATC 2 cut(s) 312, 794
MboII GAAGA 3 cut(s) 236, 360, 602
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 405
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 8 cut(s) 61, 150, 217, 235, 289, 354, 363, 759
MluNI TGGCCA 1 cut(s) 378
MnlI CCTC 6 cut(s) 145, 165, 279, 313, 515, 613
Mox20I TGGCCA 1 cut(s) 378
Mph1103I ATGCAT 2 cut(s) 271, 607
MscI TGGCCA 1 cut(s) 378
MseI TTAA 4 cut(s) 47, 74, 362, 808
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 374
MspCI CTTAAG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 792
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 792
MwoI GCNNNNNNNGC 3 cut(s) 107, 463, 764
NdeII GATC 2 cut(s) 312, 794
NlaIII CATG 3 cut(s) 385, 530, 609
NsiI ATGCAT 2 cut(s) 271, 607
NspI RCATGY 2 cut(s) 385, 609
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PsuI RGATCY 1 cut(s) 794
PvuII CAGCTG 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 4 cut(s) 47, 74, 362, 808
SatI GCNGC 1 cut(s) 687
Sau3AI GATC 2 cut(s) 312, 794
ScrFI CCNGG 1 cut(s) 792
SduI GDGCHC 1 cut(s) 405
SetI ASST 8 cut(s) 85, 376, 484, 494, 522, 561, 627, 793
SfaNI GCATC 3 cut(s) 124, 151, 256
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 2 cut(s) 46, 521
SmoI CTYRAG 2 cut(s) 46, 521
Sse9I AATT 8 cut(s) 61, 150, 217, 235, 289, 354, 363, 759
SsiI CCGC 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 790
TaaI ACNGT 5 cut(s) 277, 332, 345, 657, 730
TaiI ACGT 1 cut(s) 494
TaqI TCGA 3 cut(s) 68, 128, 264
TasI AATT 8 cut(s) 61, 150, 217, 235, 289, 354, 363, 759
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 4 cut(s) 47, 74, 362, 808
Tru9I TTAA 4 cut(s) 47, 74, 362, 808
TscAI CASTG 3 cut(s) 171, 282, 335
TseI GCWGC 1 cut(s) 686
TspDTI ATGAA 2 cut(s) 229, 622
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 3 cut(s) 171, 282, 335
Vha464I CTTAAG 1 cut(s) 46
XapI RAATTY 3 cut(s) 235, 289, 354
XceI RCATGY 2 cut(s) 385, 609
XcmI CCANNNNNNNNNTGG 2 cut(s) 386, 446
Zsp2I ATGCAT 2 cut(s) 271, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.