Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27670 |
| fragaria_vesca | FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551 |
| malus_domestica | MD09G1028200.v1.1 MD17G1029800.v1.1 |
| prunus_persica | Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1 |
| pyrus_communis | pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720 |
| rosa_chinensis | RchiOBHm_Chr2g0173001 |
| rosa_laevigata | RLG00000022148 |
| rosa_multiflora | Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079360 |
| rosa_rugosa | Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1 |
| rosa_samantha | Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100 |
| rosa_wichuraiana | Rw2G052910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1349 |
| Acc36I | ACCTGC | 1 cut(s) | 1349 |
| AccI | GTMKAC | 1 cut(s) | 1267 |
| AciI | CCGC | 4 cut(s) | 185, 237, 341, 427 |
| AclWI | GGATC | 2 cut(s) | 1363, 1376 |
| AcsI | RAATTY | 3 cut(s) | 386, 1055, 1516 |
| AcuI | CTGAAG | 1 cut(s) | 281 |
| AdeI | CACNNNGTG | 1 cut(s) | 338 |
| AfaI | GTAC | 4 cut(s) | 880, 896, 1095, 1219 |
| AflII | CTTAAG | 1 cut(s) | 923 |
| AflIII | ACRYGT | 2 cut(s) | 475, 1255 |
| AgsI | TTSAA | 7 cut(s) | 102, 117, 397, 977, 1253, 1296, 1455 |
| AjnI | CCWGG | 1 cut(s) | 699 |
| Alw21I | GWGCWC | 2 cut(s) | 334, 1125 |
| Alw26I | GTCTC | 2 cut(s) | 217, 1144 |
| Alw44I | GTGCAC | 1 cut(s) | 330 |
| AlwI | GGATC | 2 cut(s) | 1363, 1376 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1364 |
| Ama87I | CYCGRG | 1 cut(s) | 996 |
| ApaLI | GTGCAC | 1 cut(s) | 330 |
| ApeKI | GCWGC | 7 cut(s) | 245, 278, 377, 440, 617, 1384, 1539 |
| ApoI | RAATTY | 3 cut(s) | 386, 1055, 1516 |
| AspS9I | GGNCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| AsuHPI | GGTGA | 1 cut(s) | 715 |
| AsuII | TTCGAA | 1 cut(s) | 1553 |
| AvaI | CYCGRG | 1 cut(s) | 996 |
| AvaII | GGWCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| BaeGI | GKGCMC | 2 cut(s) | 334, 910 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 195, 228 |
| BamHI | GGATCC | 1 cut(s) | 1368 |
| BanII | GRGCYC | 1 cut(s) | 1125 |
| Bbv12I | GWGCWC | 2 cut(s) | 334, 1125 |
| BbvI | GCAGC | 7 cut(s) | 232, 290, 364, 427, 604, 1396, 1551 |
| BccI | CCATC | 6 cut(s) | 361, 426, 736, 1003, 1072, 1326 |
| BciT130I | CCWGG | 1 cut(s) | 701 |
| BclI | TGATCA | 1 cut(s) | 484 |
| BcoDI | GTCTC | 2 cut(s) | 217, 1144 |
| BfaI | CTAG | 6 cut(s) | 95, 249, 297, 768, 1211, 1352 |
| BfrI | CTTAAG | 1 cut(s) | 923 |
| BfuAI | ACCTGC | 1 cut(s) | 1349 |
| BglII | AGATCT | 2 cut(s) | 299, 595 |
| BisI | GCNGC | 7 cut(s) | 246, 279, 378, 441, 618, 1385, 1540 |
| BlsI | GCNGC | 7 cut(s) | 247, 280, 379, 442, 619, 1386, 1541 |
| BmcAI | AGTACT | 1 cut(s) | 880 |
| Bme1390I | CCNGG | 1 cut(s) | 701 |
| Bme18I | GGWCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| BmeT110I | CYCGRG | 1 cut(s) | 996 |
| BmgT120I | GGNCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| BmiI | GGNNCC | 5 cut(s) | 1027, 1159, 1198, 1370, 1443 |
| BmrFI | CCNGG | 1 cut(s) | 701 |
| BmsI | GCATC | 4 cut(s) | 604, 904, 1320, 1479 |
| Bpu14I | TTCGAA | 1 cut(s) | 1553 |
| BpuEI | CTTGAG | 2 cut(s) | 192, 448 |
| Bsa29I | ATCGAT | 1 cut(s) | 1525 |
| BsaI | GGTCTC | 1 cut(s) | 1144 |
| BsaJI | CCNNGG | 3 cut(s) | 576, 699, 1570 |
| Bse1I | ACTGG | 3 cut(s) | 324, 517, 1275 |
| Bse3DI | GCAATG | 1 cut(s) | 897 |
| BseBI | CCWGG | 1 cut(s) | 701 |
| BseCI | ATCGAT | 1 cut(s) | 1525 |
| BseDI | CCNNGG | 3 cut(s) | 576, 699, 1570 |
| BseGI | GGATG | 2 cut(s) | 1087, 1335 |
| BseMI | GCAATG | 1 cut(s) | 897 |
| BseMII | CTCAG | 3 cut(s) | 734, 996, 1410 |
| BseNI | ACTGG | 3 cut(s) | 324, 517, 1275 |
| BseRI | GAGGAG | 2 cut(s) | 205, 573 |
| BseSI | GKGCMC | 2 cut(s) | 334, 910 |
| BseXI | GCAGC | 7 cut(s) | 232, 290, 364, 427, 604, 1396, 1551 |
| BseYI | CCCAGC | 3 cut(s) | 178, 902, 1364 |
| BsgI | GTGCAG | 1 cut(s) | 1421 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1529 |
| BshVI | ATCGAT | 1 cut(s) | 1525 |
| BsiEI | CGRYCG | 1 cut(s) | 1529 |
| BsiHKAI | GWGCWC | 2 cut(s) | 334, 1125 |
| BsiHKCI | CYCGRG | 1 cut(s) | 996 |
| BsiSI | CCGG | 1 cut(s) | 1200 |
| BslFI | GGGAC | 1 cut(s) | 1171 |
| BsmAI | GTCTC | 2 cut(s) | 217, 1144 |
| BsmFI | GGGAC | 1 cut(s) | 1171 |
| Bso31I | GGTCTC | 1 cut(s) | 1144 |
| BsoBI | CYCGRG | 1 cut(s) | 996 |
| Bsp119I | TTCGAA | 1 cut(s) | 1553 |
| Bsp1286I | GDGCHC | 3 cut(s) | 334, 910, 1125 |
| Bsp1407I | TGTACA | 2 cut(s) | 894, 1217 |
| Bsp143I | GATC | 7 cut(s) | 299, 459, 484, 595, 1368, 1522, 1526 |
| BspACI | CCGC | 4 cut(s) | 185, 237, 341, 427 |
| BspCNI | CTCAG | 3 cut(s) | 733, 997, 1409 |
| BspDI | ATCGAT | 1 cut(s) | 1525 |
| BspLI | GGNNCC | 5 cut(s) | 1027, 1159, 1198, 1370, 1443 |
| BspMI | ACCTGC | 1 cut(s) | 1349 |
| BspPI | GGATC | 2 cut(s) | 1363, 1376 |
| BspT104I | TTCGAA | 1 cut(s) | 1553 |
| BspTI | CTTAAG | 1 cut(s) | 923 |
| BspTNI | GGTCTC | 1 cut(s) | 1144 |
| BsrDI | GCAATG | 1 cut(s) | 897 |
| BsrGI | TGTACA | 2 cut(s) | 894, 1217 |
| BsrI | ACTGG | 3 cut(s) | 324, 517, 1275 |
| BssECI | CCNNGG | 3 cut(s) | 576, 699, 1570 |
| BssMI | GATC | 7 cut(s) | 299, 459, 484, 595, 1368, 1522, 1526 |
| BssT1I | CCWWGG | 2 cut(s) | 576, 1570 |
| Bst2UI | CCWGG | 1 cut(s) | 701 |
| Bst4CI | ACNGT | 4 cut(s) | 34, 367, 807, 883 |
| Bst6I | CTCTTC | 2 cut(s) | 257, 279 |
| BstAFI | CTTAAG | 1 cut(s) | 923 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 338, 914 |
| BstAUI | TGTACA | 2 cut(s) | 894, 1217 |
| BstBI | TTCGAA | 1 cut(s) | 1553 |
| BstDEI | CTNAG | 3 cut(s) | 720, 1005, 1396 |
| BstF5I | GGATG | 2 cut(s) | 1087, 1335 |
| BstKTI | GATC | 7 cut(s) | 302, 462, 487, 598, 1371, 1525, 1529 |
| BstMAI | GTCTC | 2 cut(s) | 217, 1144 |
| BstMBI | GATC | 7 cut(s) | 299, 459, 484, 595, 1368, 1522, 1526 |
| BstMCI | CGRYCG | 1 cut(s) | 1529 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 175, 245, 329, 338, 914, 1355 |
| BstNI | CCWGG | 1 cut(s) | 701 |
| BstNSI | RCATGY | 4 cut(s) | 68, 479, 1259, 1384 |
| BstSCI | CCNGG | 1 cut(s) | 699 |
| BstSLI | GKGCMC | 2 cut(s) | 334, 910 |
| BstV1I | GCAGC | 7 cut(s) | 232, 290, 364, 427, 604, 1396, 1551 |
| BstX2I | RGATCY | 3 cut(s) | 299, 595, 1368 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1325 |
| BstYI | RGATCY | 3 cut(s) | 299, 595, 1368 |
| Bsu15I | ATCGAT | 1 cut(s) | 1525 |
| BsuTUI | ATCGAT | 1 cut(s) | 1525 |
| BtsCI | GGATG | 2 cut(s) | 1087, 1335 |
| BtsI | GCAGTG | 1 cut(s) | 143 |
| BtsIMutI | CAGTG | 5 cut(s) | 143, 317, 510, 1220, 1404 |
| BveI | ACCTGC | 1 cut(s) | 1349 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1364 |
| Cfr13I | GGNCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| ClaI | ATCGAT | 1 cut(s) | 1525 |
| CseI | GACGC | 2 cut(s) | 975, 1376 |
| Csp6I | GTAC | 4 cut(s) | 879, 895, 1094, 1218 |
| CviQI | GTAC | 4 cut(s) | 879, 895, 1094, 1218 |
| DdeI | CTNAG | 3 cut(s) | 720, 1005, 1396 |
| DpnI | GATC | 7 cut(s) | 301, 461, 486, 597, 1370, 1524, 1528 |
| DpnII | GATC | 7 cut(s) | 299, 459, 484, 595, 1368, 1522, 1526 |
| DraIII | CACNNNGTG | 1 cut(s) | 338 |
| Eam1104I | CTCTTC | 2 cut(s) | 257, 279 |
| EarI | CTCTTC | 2 cut(s) | 257, 279 |
| EciI | GGCGGA | 1 cut(s) | 200 |
| Ecl136II | GAGCTC | 1 cut(s) | 1123 |
| Eco130I | CCWWGG | 2 cut(s) | 576, 1570 |
| Eco24I | GRGCYC | 1 cut(s) | 1125 |
| Eco31I | GGTCTC | 1 cut(s) | 1144 |
| Eco32I | GATATC | 2 cut(s) | 190, 841 |
| Eco47I | GGWCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| Eco53kI | GAGCTC | 1 cut(s) | 1123 |
| Eco57I | CTGAAG | 1 cut(s) | 281 |
| Eco88I | CYCGRG | 1 cut(s) | 996 |
| EcoICRI | GAGCTC | 1 cut(s) | 1123 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1026, 1158, 1442 |
| EcoRI | GAATTC | 2 cut(s) | 1055, 1516 |
| EcoRII | CCWGG | 1 cut(s) | 699 |
| EcoRV | GATATC | 2 cut(s) | 190, 841 |
| EcoT14I | CCWWGG | 2 cut(s) | 576, 1570 |
| EcoT38I | GRGCYC | 1 cut(s) | 1125 |
| ErhI | CCWWGG | 2 cut(s) | 576, 1570 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1447, 1479 |
| FaqI | GGGAC | 1 cut(s) | 1171 |
| FauNDI | CATATG | 1 cut(s) | 960 |
| FbaI | TGATCA | 1 cut(s) | 484 |
| FblI | GTMKAC | 1 cut(s) | 1267 |
| Fnu4HI | GCNGC | 7 cut(s) | 246, 279, 378, 441, 618, 1385, 1540 |
| FokI | GGATG | 2 cut(s) | 1094, 1342 |
| FriOI | GRGCYC | 1 cut(s) | 1125 |
| Fsp4HI | GCNGC | 7 cut(s) | 246, 279, 378, 441, 618, 1385, 1540 |
| FspBI | CTAG | 6 cut(s) | 95, 249, 297, 768, 1211, 1352 |
| GluI | GCNGC | 7 cut(s) | 246, 279, 378, 441, 618, 1385, 1540 |
| GsaI | CCCAGC | 3 cut(s) | 182, 906, 1368 |
| HapII | CCGG | 1 cut(s) | 1200 |
| HgaI | GACGC | 2 cut(s) | 975, 1376 |
| HindIII | AAGCTT | 1 cut(s) | 1171 |
| HinfI | GANTC | 3 cut(s) | 51, 952, 1424 |
| HpaII | CCGG | 1 cut(s) | 1200 |
| HphI | GGTGA | 1 cut(s) | 715 |
| Hpy166II | GTNNAC | 5 cut(s) | 28, 332, 1220, 1268, 1567 |
| Hpy188III | TCNNGA | 1 cut(s) | 117 |
| Hpy8I | GTNNAC | 5 cut(s) | 28, 332, 1220, 1268, 1567 |
| Hpy99I | CGWCG | 1 cut(s) | 174 |
| HpyAV | CCTTC | 2 cut(s) | 73, 1171 |
| HpyCH4III | ACNGT | 4 cut(s) | 34, 367, 807, 883 |
| HpyCH4IV | ACGT | 1 cut(s) | 172 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 175, 245, 329, 338, 914, 1355 |
| HpyF3I | CTNAG | 3 cut(s) | 720, 1005, 1396 |
| HpySE526I | ACGT | 1 cut(s) | 172 |
| Ksp22I | TGATCA | 1 cut(s) | 484 |
| Kzo9I | GATC | 7 cut(s) | 299, 459, 484, 595, 1368, 1522, 1526 |
| LmnI | GCTCC | 4 cut(s) | 560, 1120, 1196, 1355 |
| Lsp1109I | GCAGC | 7 cut(s) | 232, 290, 364, 427, 604, 1396, 1551 |
| LweI | GCATC | 4 cut(s) | 604, 904, 1320, 1479 |
| MaeI | CTAG | 6 cut(s) | 95, 249, 297, 768, 1211, 1352 |
| MaeII | ACGT | 1 cut(s) | 172 |
| MaeIII | GTNAC | 3 cut(s) | 251, 478, 807 |
| MalI | GATC | 7 cut(s) | 301, 461, 486, 597, 1370, 1524, 1528 |
| MboI | GATC | 7 cut(s) | 299, 459, 484, 595, 1368, 1522, 1526 |
| MboII | GAAGA | 5 cut(s) | 274, 296, 590, 848, 1542 |
| MflI | RGATCY | 3 cut(s) | 299, 595, 1368 |
| MhlI | GDGCHC | 3 cut(s) | 334, 910, 1125 |
| MluCI | AATT | 9 cut(s) | 386, 444, 939, 1044, 1055, 1133, 1274, 1516, 1533 |
| MmeI | TCCRAC | 2 cut(s) | 639, 1415 |
| MseI | TTAA | 5 cut(s) | 369, 687, 924, 938, 1344 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1323 |
| MspA1I | CMGCKG | 1 cut(s) | 377 |
| MspCI | CTTAAG | 1 cut(s) | 923 |
| MspI | CCGG | 1 cut(s) | 1200 |
| MspR9I | CCNGG | 1 cut(s) | 701 |
| MvaI | CCWGG | 1 cut(s) | 701 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 175, 245, 329, 338, 914, 1355 |
| NdeI | CATATG | 1 cut(s) | 960 |
| NdeII | GATC | 7 cut(s) | 299, 459, 484, 595, 1368, 1522, 1526 |
| NlaIV | GGNNCC | 5 cut(s) | 1027, 1159, 1198, 1370, 1443 |
| NmuCI | GTSAC | 2 cut(s) | 251, 807 |
| NspI | RCATGY | 4 cut(s) | 68, 479, 1259, 1384 |
| NspV | TTCGAA | 1 cut(s) | 1553 |
| PaqCI | CACCTGC | 1 cut(s) | 1349 |
| PciI | ACATGT | 2 cut(s) | 475, 1255 |
| PfeI | GAWTC | 3 cut(s) | 51, 952, 1424 |
| PkrI | GCNGC | 7 cut(s) | 247, 280, 379, 442, 619, 1386, 1541 |
| Ple19I | CGATCG | 1 cut(s) | 1529 |
| PpuMI | RGGWCCY | 3 cut(s) | 1026, 1158, 1442 |
| PscI | ACATGT | 2 cut(s) | 475, 1255 |
| Psp124BI | GAGCTC | 1 cut(s) | 1125 |
| Psp5II | RGGWCCY | 3 cut(s) | 1026, 1158, 1442 |
| Psp6I | CCWGG | 1 cut(s) | 699 |
| PspFI | CCCAGC | 3 cut(s) | 178, 902, 1364 |
| PspGI | CCWGG | 1 cut(s) | 699 |
| PspN4I | GGNNCC | 5 cut(s) | 1027, 1159, 1198, 1370, 1443 |
| PspPI | GGNCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| PspPPI | RGGWCCY | 3 cut(s) | 1026, 1158, 1442 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1364 |
| PsuI | RGATCY | 3 cut(s) | 299, 595, 1368 |
| PvuI | CGATCG | 1 cut(s) | 1529 |
| PvuII | CAGCTG | 1 cut(s) | 377 |
| RsaI | GTAC | 4 cut(s) | 880, 896, 1095, 1219 |
| RsaNI | GTAC | 4 cut(s) | 879, 895, 1094, 1218 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1323 |
| SacI | GAGCTC | 1 cut(s) | 1125 |
| SaqAI | TTAA | 5 cut(s) | 369, 687, 924, 938, 1344 |
| SatI | GCNGC | 7 cut(s) | 246, 279, 378, 441, 618, 1385, 1540 |
| Sau3AI | GATC | 7 cut(s) | 299, 459, 484, 595, 1368, 1522, 1526 |
| Sau96I | GGNCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| ScaI | AGTACT | 1 cut(s) | 880 |
| ScrFI | CCNGG | 1 cut(s) | 701 |
| SduI | GDGCHC | 3 cut(s) | 334, 910, 1125 |
| SfaNI | GCATC | 4 cut(s) | 604, 904, 1320, 1479 |
| SfuI | TTCGAA | 1 cut(s) | 1553 |
| SinI | GGWCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1323 |
| SmlI | CTYRAG | 3 cut(s) | 207, 463, 923 |
| SmoI | CTYRAG | 3 cut(s) | 207, 463, 923 |
| Sse9I | AATT | 9 cut(s) | 386, 444, 939, 1044, 1055, 1133, 1274, 1516, 1533 |
| SsiI | CCGC | 4 cut(s) | 185, 237, 341, 427 |
| SspI | AATATT | 2 cut(s) | 124, 313 |
| SspMI | CTAG | 6 cut(s) | 95, 249, 297, 768, 1211, 1352 |
| SstI | GAGCTC | 1 cut(s) | 1125 |
| StyD4I | CCNGG | 1 cut(s) | 699 |
| StyI | CCWWGG | 2 cut(s) | 576, 1570 |
| TaaI | ACNGT | 4 cut(s) | 34, 367, 807, 883 |
| TaiI | ACGT | 1 cut(s) | 175 |
| TaqI | TCGA | 4 cut(s) | 522, 834, 1525, 1553 |
| TasI | AATT | 9 cut(s) | 386, 444, 939, 1044, 1055, 1133, 1274, 1516, 1533 |
| TatI | WGTACW | 4 cut(s) | 878, 894, 1093, 1217 |
| TfiI | GAWTC | 3 cut(s) | 51, 952, 1424 |
| Tru1I | TTAA | 5 cut(s) | 369, 687, 924, 938, 1344 |
| Tru9I | TTAA | 5 cut(s) | 369, 687, 924, 938, 1344 |
| TscAI | CASTG | 5 cut(s) | 150, 324, 517, 1227, 1404 |
| TseFI | GTSAC | 2 cut(s) | 251, 807 |
| TseI | GCWGC | 7 cut(s) | 245, 278, 377, 440, 617, 1384, 1539 |
| Tsp45I | GTSAC | 2 cut(s) | 251, 807 |
| TspDTI | ATGAA | 3 cut(s) | 435, 936, 1104 |
| TspGWI | ACGGA | 1 cut(s) | 1242 |
| TspRI | CASTG | 5 cut(s) | 150, 324, 517, 1227, 1404 |
| Vha464I | CTTAAG | 1 cut(s) | 923 |
| VneI | GTGCAC | 1 cut(s) | 330 |
| VpaK11BI | GGWCC | 4 cut(s) | 406, 1026, 1158, 1442 |
| XapI | RAATTY | 3 cut(s) | 386, 1055, 1516 |
| XceI | RCATGY | 4 cut(s) | 68, 479, 1259, 1384 |
| XmiI | GTMKAC | 1 cut(s) | 1267 |
| XspI | CTAG | 6 cut(s) | 95, 249, 297, 768, 1211, 1352 |
| ZrmI | AGTACT | 1 cut(s) | 880 |