Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001894

Physical Location & Seq

Genomic Coordinates Forward (+)

1817578 .. 1818754

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCATCTCACTTCTAGTGGGACAGGCAATGCCCCTTATGTTTGCACGGTAGTGACTGTGATAAGGTGCCTTTCACAAGCTCCTAGGCTTCCAACCTTGGATTGGGGTGCTATCATCAGACGCTGCATGAGATACGAAGCTCAGGTTGCTGAGTTGTTTCCAACAGACGTATCTCTTGAAAAGGGATCGCTTAGGGAGGAATGTGTAAAGTTCTCATTGGTTCATGCAAATAAGTTTGATCCACTTCTAAGTTTCCTTGATGAGCTCTCTGACTTGTCCAGATTCAGAACACTTGAGTTAAAGCTGCAATCTTGTATTCTCGGTCATCTTGTAGATCTCGTCAAAGTATTCTCAGGTTCAAGGCTTGAGAAAATGTTTGATGATGTCTGTAGCTACTTCTCTTCATTTACTTCATATCAATCATATGACACCAATGAGACAAGCTTATTACGGATTTCATGCTGGAAGGGTGTCTATCAGTGTTTAGATGAAGCTTCCCTTGACTCTCTGGAGTACATATCTCACATAGAAAATTGCATGGAGGTGCTCTTTTCCTTGATGCATGCAACACAGTTAGCTGCCACAGTAGGAGAGCATTTCGTAGAGGAGTGGTCTGAAGCTGTTGGGTGCTTTGGGAAGGCTCGGAGAAGTTGGTTGTTGAACTTCCTGCAGGTTACCCAGGAGGACTTGCAGCAAAGAGATGGACAGCTTATTGAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

241

Amino Acids

27.34

Weight (kDa)

5.0

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27670
fragaria_vesca	FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551
malus_domestica	MD09G1028200.v1.1 MD17G1029800.v1.1
prunus_persica	Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1
pyrus_communis	pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720
rosa_chinensis	RchiOBHm_Chr2g0173001
rosa_laevigata	RLG00000022148
rosa_multiflora	Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003
rosa_roxburghii	Rroxscaffold_2G00079360
rosa_rugosa	Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1
rosa_samantha	Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100
rosa_wichuraiana	Rw2G052910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
AccB1I	GGYRCC	1 cut(s)	66
AclWI	GGATC	2 cut(s)	193, 233
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	179, 360, 661
AjnI	CCWGG	1 cut(s)	678
AleI	CACNNNNGTG	1 cut(s)	50
Alw21I	GWGCWC	2 cut(s)	267, 549
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	2 cut(s)	193, 233
AlwNI	CAGNNNCTG	1 cut(s)	123
ApeKI	GCWGC	4 cut(s)	123, 304, 578, 691
AspA2I	CCTAGG	1 cut(s)	83
AvrII	CCTAGG	1 cut(s)	83
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	267, 549
BbvI	GCAGC	4 cut(s)	110, 291, 565, 703
BccI	CCATC	1 cut(s)	695
BciT130I	CCWGG	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	15, 84
BfmI	CTRYAG	2 cut(s)	388, 668
BfuAI	ACCTGC	1 cut(s)	661
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	4 cut(s)	124, 305, 579, 692
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	4 cut(s)	125, 306, 580, 693
Bme1390I	CCNGG	1 cut(s)	680
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	2 cut(s)	13, 549
BpmI	CTGGAG	1 cut(s)	530
Bpu10I	CCTNAGC	2 cut(s)	141, 191
BpuEI	CTTGAG	2 cut(s)	314, 386
BsaJI	CCNNGG	3 cut(s)	83, 96, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	3 cut(s)	83, 96, 678
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	3 cut(s)	141, 155, 366
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	4 cut(s)	110, 291, 565, 703
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	267, 549
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	267, 549
Bsp143I	GATC	3 cut(s)	185, 238, 334
BspCNI	CTCAG	3 cut(s)	142, 154, 365
BspLI	GGNNCC	1 cut(s)	68
BspMAI	CTGCAG	1 cut(s)	672
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	2 cut(s)	193, 233
BspT107I	GGYRCC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	83, 96, 678
BssMI	GATC	3 cut(s)	185, 238, 334
BssT1I	CCWWGG	2 cut(s)	83, 96
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	4 cut(s)	49, 58, 573, 586
Bst6I	CTCTTC	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	5 cut(s)	141, 150, 191, 248, 352
BstEII	GGTNACC	1 cut(s)	673
BstKTI	GATC	3 cut(s)	188, 241, 337
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	3 cut(s)	185, 238, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	1 cut(s)	566
BstPI	GGTNACC	1 cut(s)	673
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	2 cut(s)	388, 668
BstV1I	GCAGC	4 cut(s)	110, 291, 565, 703
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	485
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	1 cut(s)	123
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	5 cut(s)	127, 224, 459, 538, 563
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	5 cut(s)	141, 150, 191, 248, 352
DpnI	GATC	3 cut(s)	187, 240, 336
DpnII	GATC	3 cut(s)	185, 238, 334
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	83, 96
Eco24I	GRGCYC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	636
Eco91I	GGTNACC	1 cut(s)	673
EcoICRI	GAGCTC	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	2 cut(s)	83, 96
EcoT22I	ATGCAT	2 cut(s)	6, 564
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	83, 96
FaeI	CATG	5 cut(s)	130, 227, 462, 541, 566
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	5 cut(s)	126, 223, 458, 537, 562
FauNDI	CATATG	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	124, 305, 579, 692
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	124, 305, 579, 692
FspBI	CTAG	2 cut(s)	15, 84
GluI	GCNGC	4 cut(s)	124, 305, 579, 692
GsuI	CTGGAG	1 cut(s)	530
HgaI	GACGC	1 cut(s)	129
Hin1II	CATG	5 cut(s)	130, 227, 462, 541, 566
HindIII	AAGCTT	2 cut(s)	442, 492
HinfI	GANTC	2 cut(s)	282, 503
Hpy188I	TCNGA	6 cut(s)	119, 271, 287, 616, 645, 722
Hpy188III	TCNNGA	3 cut(s)	176, 279, 509
HpyAV	CCTTC	2 cut(s)	460, 631
HpyCH4III	ACNGT	4 cut(s)	49, 58, 573, 586
HpyCH4IV	ACGT	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	5 cut(s)	141, 150, 191, 248, 352
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	130, 227, 462, 541, 566
Kzo9I	GATC	3 cut(s)	185, 238, 334
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	4 cut(s)	110, 291, 565, 703
LweI	GCATC	2 cut(s)	13, 549
MaeI	CTAG	2 cut(s)	15, 84
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	52, 673
MalI	GATC	3 cut(s)	187, 240, 336
MboI	GATC	3 cut(s)	185, 238, 334
MboII	GAAGA	1 cut(s)	393
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	267, 549
MluCI	AATT	1 cut(s)	532
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	2 cut(s)	116, 185
MnlI	CCTC	4 cut(s)	190, 535, 598, 676
Mph1103I	ATGCAT	2 cut(s)	6, 564
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	2 cut(s)	50, 542
MspR9I	CCNGG	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	3 cut(s)	185, 238, 334
NlaIII	CATG	5 cut(s)	130, 227, 462, 541, 566
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	2 cut(s)	6, 564
NspI	RCATGY	1 cut(s)	566
OliI	CACNNNNGTG	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	4 cut(s)	125, 306, 580, 693
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	678
PspEI	GGTNACC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	672
PstNI	CAGNNNCTG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	2 cut(s)	50, 542
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	4 cut(s)	124, 305, 579, 692
Sau3AI	GATC	3 cut(s)	185, 238, 334
SbfI	CCTGCAGG	1 cut(s)	672
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	680
SdaI	CCTGCAGG	1 cut(s)	672
SduI	GDGCHC	2 cut(s)	267, 549
SfaNI	GCATC	2 cut(s)	13, 549
SfcI	CTRYAG	2 cut(s)	388, 668
SmiMI	CAYNNNNRTG	2 cut(s)	50, 542
SmlI	CTYRAG	2 cut(s)	293, 365
SmoI	CTYRAG	2 cut(s)	293, 365
SphI	GCATGC	1 cut(s)	566
Sse8387I	CCTGCAGG	1 cut(s)	672
Sse9I	AATT	1 cut(s)	532
SspMI	CTAG	2 cut(s)	15, 84
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	2 cut(s)	83, 96
TaaI	ACNGT	4 cut(s)	49, 58, 573, 586
TaiI	ACGT	1 cut(s)	171
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	1 cut(s)	532
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	1 cut(s)	485
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	123, 304, 578, 691
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	5 cut(s)	212, 393, 402, 447, 504
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	1 cut(s)	485
XceI	RCATGY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XmaJI	CCTAGG	1 cut(s)	83
XspI	CTAG	2 cut(s)	15, 84
Zsp2I	ATGCAT	2 cut(s)	6, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.