pycom17g08820

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002548
Physical Location & Seq
Reverse (-)
6637835 .. 6641056
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1848 bp
ATGGCACTTACAACATTCTCCTCGCTCTCTCCCTCTTTGGTCTCAACTAACAGTAGGTATCAAAGATTAATCCATCTTCCAAAAGTTCTGCTTCAAAGAACAGTAGGAAAACAACCCTCCTTCCTTTATTTATCAATAAACTCATCACCATCATCGAAGGTTATCAGTAATCCTCCGGCAGTGCGACGGCGATTCGCTCAATACCATCCTACCGTTTGGGATTCCAAACTCATCGACTCATTCACCACTCATTACACGTATGAATTGCATGGGACGCGATTGGAGCGTCTAAAGCAGAACGTTACTGAAACGTTGCTGGCAGTATCAACTAGTAGTGCTCAAGGCACTACTAGCACTTTATCAATGTTAAAGCTTATCGACTCAATGCAGCGATTGGGAGTGGCCTATCATTTCGAAAAAGAAATCGAAGCAGTTCTAACTAGCCTTGGTTCTTCCAGTACTGCCAGTACATCAATTGATCTTCACACCGTTGCCTTGCAGTTTCGGATATTACGGGAACATGGCATCCCTATTAGTCCAGATGTGTTTAACAAGTTTAGAGCTGGAAACGGAAGATTTGAGGATAGCTTAAGCAAGGACATTGAAGGACTTTTGAGCTTGTATGAAGCCTCACACCTTGGTATGCTTGGGGAAGAGCATGTTTTGGAGGAAGCCAAAAGTTTTAGTGCCAAAAGGTTGAGACAATTATTGGGAACATTAGAGGGTAAAGATGGTTTATTGAAGCAACTAGTTCAGCAATCAATGGAAACCCCCTTACATTGGAGGATGCCGAGGATAGAAGCTCGAAGTTTCATTGATATATACCAAAAGGATGATTCTAGGAACATCGATTTGCTTGAATTAGCCAAATTGGATTATAATCTTGTCCAATCAGTATATCAGAGGGAGATAAAGGAGCTATCAAGGCAAGAAATGTGGTGGACGGATTTGGATTTTGAACATAAGGCAAATTTTTCGAGAGACAGATTGATGGAGAACTATTTGTGGGCAATGGGAATCAATTATGAGCCCCAATTCTCGAATTGCAGGATTGGCCTCACCAAATTCGTTTGCATATTAACAGTAATTGATGACATGTACGATGTTTATGGATTTTTGGATGAACTTGAGCTGTTTACAGATGCAGTACATAGGTGGAATATGGAGGACAAGGAGGAGCTTCCCGAGTACATGAAGCCAATTTATACAGCCTTGCTCAACTTTGGGAATGAAGTAACTGATAACGTATTTAAAAACAATGGTTTAAGCGTCCTCCCCTATATTAAGAAAGAGTGGGTAAATCTTTGTAATTCATATCTGGTAGAGGCACGATGGTTTTACTGTGGATACACACCAACCCTAGAAGAGTACTTAAAGAATGCATGGACTTCGGTGGGTGGTCCTGGAGCAGCCCTCCATGCTTATTTGTTGTTGCAAGGACGCAACATAACAAAAACCTCACTTGACTCCTTTAAGCATGGCTCTCAAATAATATATTGGTCATCTCTAATGACTCGGCTTAGCGATGATTTGGGCACTTCCAAGGCTGAGAGTGAGAGAGGTGATGTGGCAAAATCTGTTGAGTGCTGCATGAAAGAAAGAGGCGCATCTGAAGAAGAAGCGCAGGACTACATAAACGAATTGATCTGCTATTCGTGGAAGAAGATTAATGAGGAGAGTTCAAAAACTGCTATACCAAAATCAATTGTAAAACTGTCACTGAATATGGCTCGGACTGCTCACTCTATTTTCCAACATGGAGACGGTATTGGAACTTCAAATGGGGTCACCAAAGATCGTTTAATCTCTTTAATTTCTAATCCTATCCCTATCATCACTCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

616

Amino Acids

70.08

Weight (kDa)

6.14

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 73 - 252 8.5e-46 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 316 - 555 1.2e-86 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 355 - 555 7.1e-56 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AccII CGCG 1 cut(s) 277
AclI AACGTT 2 cut(s) 300, 311
AcsI RAATTY 2 cut(s) 970, 1064
AcuI CTGAAG 1 cut(s) 1632
AfaI GTAC 6 cut(s) 460, 469, 1100, 1149, 1190, 1370
AfiI CCNNNNNNNGG 1 cut(s) 780
AflII CTTAAG 1 cut(s) 589
AflIII ACRYGT 2 cut(s) 255, 1095
AgsI TTSAA 7 cut(s) 95, 605, 742, 860, 959, 1683, 1779
AhlI ACTAGT 2 cut(s) 329, 748
AjnI CCWGG 1 cut(s) 1402
AloI GAACNNNNNNTCC 2 cut(s) 510, 542
AluBI AGCT 8 cut(s) 373, 563, 588, 618, 803, 919, 1132, 1180
AluI AGCT 8 cut(s) 373, 563, 588, 618, 803, 919, 1132, 1180
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 4 cut(s) 46, 694, 975, 1755
Ama87I CYCGRG 1 cut(s) 1184
AoxI GGCC 2 cut(s) 402, 1054
ApeKI GCWGC 3 cut(s) 388, 1409, 1587
ApoI RAATTY 2 cut(s) 970, 1064
AseI ATTAAT 2 cut(s) 68, 1668
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 2 cut(s) 1607, 1624
AspS9I GGNCC 1 cut(s) 1400
AsuHPI GGTGA 5 cut(s) 138, 235, 1051, 1574, 1780
AsuII TTCGAA 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 1184
AvaII GGWCC 1 cut(s) 1400
BaeGI GKGCMC 1 cut(s) 1538
BanII GRGCYC 1 cut(s) 1032
BarI GAAGNNNNNNTAC 2 cut(s) 1759, 1791
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 3 cut(s) 400, 1421, 1574
BccI CCATC 6 cut(s) 81, 157, 213, 725, 985, 1326
BceAI ACGGC 1 cut(s) 203
BcgI CGANNNNNNTGC 4 cut(s) 957, 991, 1371, 1405
BciT130I CCWGG 1 cut(s) 1404
BciVI GTATCC 1 cut(s) 1340
BcoDI GTCTC 4 cut(s) 46, 694, 975, 1755
BcuI ACTAGT 2 cut(s) 329, 748
BfaI CTAG 6 cut(s) 330, 351, 441, 749, 840, 1361
BfrI CTTAAG 1 cut(s) 589
BfuI GTATCC 1 cut(s) 1340
BisI GCNGC 3 cut(s) 389, 1410, 1588
BlpI GCTNAGC 1 cut(s) 1520
BlsI GCNGC 3 cut(s) 390, 1411, 1589
BmcAI AGTACT 2 cut(s) 460, 1370
Bme1390I CCNGG 1 cut(s) 1404
Bme18I GGWCC 1 cut(s) 1400
BmeT110I CYCGRG 1 cut(s) 1184
BmgT120I GGNCC 1 cut(s) 1400
BmrFI CCNGG 1 cut(s) 1404
BmsI GCATC 4 cut(s) 534, 777, 1132, 1616
BplI GAGNNNNNCTC 2 cut(s) 1398, 1430
BpmI CTGGAG 1 cut(s) 1425
Bpu1102I GCTNAGC 1 cut(s) 1520
Bpu14I TTCGAA 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 324, 1148
Bsa29I ATCGAT 1 cut(s) 849
BsaAI YACGTR 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 879
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 4 cut(s) 445, 637, 791, 1542
Bsc4I CCNNNNNNNGG 1 cut(s) 780
Bse1I ACTGG 2 cut(s) 456, 465
Bse3DI GCAATG 1 cut(s) 1017
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 1 cut(s) 1404
BseCI ATCGAT 1 cut(s) 849
BseDI CCNNGG 4 cut(s) 445, 637, 791, 1542
BseGI GGATG 5 cut(s) 205, 525, 792, 838, 1126
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 1 cut(s) 780
BseMI GCAATG 1 cut(s) 1017
BseMII CTCAG 1 cut(s) 1539
BseNI ACTGG 2 cut(s) 456, 465
BseRI GAGGAG 3 cut(s) 10, 1190, 1688
BseSI GKGCMC 1 cut(s) 1538
BseXI GCAGC 3 cut(s) 400, 1421, 1574
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 404, 1056
BshVI ATCGAT 1 cut(s) 849
BsiHKAI GWGCWC 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 1184
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 780
BsmAI GTCTC 4 cut(s) 46, 694, 975, 1755
BsmBI CGTCTC 1 cut(s) 1755
BsmFI GGGAC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 1384
BsnI GGCC 2 cut(s) 404, 1056
Bso31I GGTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 1184
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 3 cut(s) 340, 1032, 1538
Bsp143I GATC 3 cut(s) 478, 1644, 1795
Bsp1720I GCTNAGC 1 cut(s) 1520
BspANI GGCC 2 cut(s) 404, 1056
BspCNI CTCAG 1 cut(s) 1540
BspDI ATCGAT 1 cut(s) 849
BspFNI CGCG 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 414
BspTI CTTAAG 1 cut(s) 589
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 1017
BsrI ACTGG 2 cut(s) 456, 465
BssECI CCNNGG 4 cut(s) 445, 637, 791, 1542
BssMI GATC 3 cut(s) 478, 1644, 1795
BssT1I CCWWGG 3 cut(s) 445, 637, 1542
Bst2UI CCWGG 1 cut(s) 1404
Bst4CI ACNGT 8 cut(s) 53, 103, 214, 490, 1084, 1343, 1716, 1766
Bst6I CTCTTC 2 cut(s) 648, 1359
BstAFI CTTAAG 1 cut(s) 589
BstBAI YACGTR 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 1520, 1548
BstEII GGTNACC 1 cut(s) 1786
BstF5I GGATG 5 cut(s) 205, 525, 792, 838, 1126
BstFNI CGCG 1 cut(s) 277
BstHHI GCGC 2 cut(s) 1607, 1624
BstKTI GATC 3 cut(s) 481, 1647, 1798
BstMAI GTCTC 4 cut(s) 46, 694, 975, 1755
BstMBI GATC 3 cut(s) 478, 1644, 1795
BstMWI GCNNNNNNNGC 8 cut(s) 274, 283, 292, 351, 925, 1053, 1418, 1736
BstNI CCWGG 1 cut(s) 1404
BstNSI RCATGY 2 cut(s) 662, 1099
BstPI GGTNACC 1 cut(s) 1786
BstSCI CCNGG 1 cut(s) 1402
BstSLI GKGCMC 1 cut(s) 1538
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 400, 1421, 1574
Bsu15I ATCGAT 1 cut(s) 849
BsuI GTATCC 1 cut(s) 1340
BsuRI GGCC 2 cut(s) 404, 1056
BsuTUI ATCGAT 1 cut(s) 849
BtgZI GCGATG 1 cut(s) 1539
BtsCI GGATG 5 cut(s) 205, 525, 792, 838, 1126
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 186, 1718
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 2 cut(s) 1607, 1624
Cfr13I GGNCC 1 cut(s) 1400
ClaI ATCGAT 1 cut(s) 849
CseI GACGC 4 cut(s) 275, 283, 1258, 1449
Csp6I GTAC 6 cut(s) 459, 468, 1099, 1148, 1189, 1369
CspCI CAANNNNNGTGG 2 cut(s) 917, 952
CviQI GTAC 6 cut(s) 459, 468, 1099, 1148, 1189, 1369
DdeI CTNAG 2 cut(s) 1520, 1548
DpnI GATC 3 cut(s) 480, 1646, 1797
DpnII GATC 3 cut(s) 478, 1644, 1795
DraI TTTAAA 1 cut(s) 1252
Eam1104I CTCTTC 2 cut(s) 648, 1359
EarI CTCTTC 2 cut(s) 648, 1359
Eco130I CCWWGG 3 cut(s) 445, 637, 1542
Eco24I GRGCYC 1 cut(s) 1032
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 1400
Eco57I CTGAAG 1 cut(s) 1632
Eco88I CYCGRG 1 cut(s) 1184
Eco91I GGTNACC 1 cut(s) 1786
EcoO65I GGTNACC 1 cut(s) 1786
EcoRII CCWGG 1 cut(s) 1402
EcoT14I CCWWGG 3 cut(s) 445, 637, 1542
EcoT22I ATGCAT 1 cut(s) 1384
EcoT38I GRGCYC 1 cut(s) 1032
ErhI CCWWGG 3 cut(s) 445, 637, 1542
Esp3I CGTCTC 1 cut(s) 1755
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 286
Fnu4HI GCNGC 3 cut(s) 389, 1410, 1588
FokI GGATG 5 cut(s) 192, 512, 799, 845, 1133
FriOI GRGCYC 1 cut(s) 1032
Fsp4HI GCNGC 3 cut(s) 389, 1410, 1588
FspBI CTAG 6 cut(s) 330, 351, 441, 749, 840, 1361
GlaI GCGC 2 cut(s) 1606, 1623
GluI GCNGC 3 cut(s) 389, 1410, 1588
GsuI CTGGAG 1 cut(s) 1425
HaeIII GGCC 2 cut(s) 404, 1056
HapII CCGG 1 cut(s) 176
HgaI GACGC 4 cut(s) 275, 283, 1258, 1449
HhaI GCGC 2 cut(s) 1607, 1624
Hin6I GCGC 2 cut(s) 1605, 1622
HinP1I GCGC 2 cut(s) 1605, 1622
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 8 cut(s) 192, 221, 236, 380, 836, 1017, 1466, 1513
HpaII CCGG 1 cut(s) 176
HphI GGTGA 5 cut(s) 138, 235, 1051, 1574, 1780
Hpy166II GTNNAC 2 cut(s) 942, 1137
Hpy188I TCNGA 4 cut(s) 507, 903, 1612, 1734
Hpy188III TCNNGA 4 cut(s) 539, 978, 1039, 1184
Hpy8I GTNNAC 2 cut(s) 942, 1137
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 3 cut(s) 130, 151, 599
HpyCH4III ACNGT 8 cut(s) 53, 103, 214, 490, 1084, 1343, 1716, 1766
HpyCH4IV ACGT 4 cut(s) 257, 300, 311, 1245
HpyCH4V TGCA 9 cut(s) 268, 388, 499, 1047, 1074, 1145, 1382, 1435, 1590
HpyF10VI GCNNNNNNNGC 8 cut(s) 274, 283, 292, 351, 925, 1053, 1418, 1736
HpyF3I CTNAG 2 cut(s) 1520, 1548
HpySE526I ACGT 4 cut(s) 257, 300, 311, 1245
HspAI GCGC 2 cut(s) 1605, 1622
Kzo9I GATC 3 cut(s) 478, 1644, 1795
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 4 cut(s) 283, 916, 1177, 1406
Lsp1109I GCAGC 3 cut(s) 400, 1421, 1574
LweI GCATC 4 cut(s) 534, 777, 1132, 1616
MaeI CTAG 6 cut(s) 330, 351, 441, 749, 840, 1361
MaeII ACGT 4 cut(s) 257, 300, 311, 1245
MaeIII GTNAC 4 cut(s) 301, 1234, 1716, 1786
MalI GATC 3 cut(s) 480, 1646, 1797
MboI GATC 3 cut(s) 478, 1644, 1795
MfeI CAATTG 2 cut(s) 474, 1704
MhlI GDGCHC 3 cut(s) 340, 1032, 1538
MlyI GAGTC 4 cut(s) 230, 374, 1460, 1507
MmeI TCCRAC 1 cut(s) 1777
Mph1103I ATGCAT 1 cut(s) 1384
MroXI GAANNNNTTC 1 cut(s) 432
MspCI CTTAAG 1 cut(s) 589
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 1404
MunI CAATTG 2 cut(s) 474, 1704
Mva1269I GAATGC 1 cut(s) 1384
MvaI CCWGG 1 cut(s) 1404
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 8 cut(s) 274, 283, 292, 351, 925, 1053, 1418, 1736
NdeII GATC 3 cut(s) 478, 1644, 1795
NmeAIII GCCGAG 2 cut(s) 816, 1495
NmuCI GTSAC 2 cut(s) 1716, 1786
NsiI ATGCAT 1 cut(s) 1384
NspI RCATGY 2 cut(s) 662, 1099
NspV TTCGAA 1 cut(s) 414
PciI ACATGT 1 cut(s) 1095
PciSI GCTCTTC 1 cut(s) 648
PctI GAATGC 1 cut(s) 1384
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 4 cut(s) 192, 221, 836, 1017
PfoI TCCNGGA 1 cut(s) 1402
PkrI GCNGC 3 cut(s) 390, 1411, 1589
PleI GAGTC 4 cut(s) 230, 374, 1460, 1507
PpsI GAGTC 4 cut(s) 230, 374, 1460, 1507
Ppu21I YACGTR 1 cut(s) 258
PscI ACATGT 1 cut(s) 1095
PshBI ATTAAT 2 cut(s) 68, 1668
PsiI TTATAA 1 cut(s) 879
Psp1406I AACGTT 2 cut(s) 300, 311
Psp6I CCWGG 1 cut(s) 1402
PspEI GGTNACC 1 cut(s) 1786
PspGI CCWGG 1 cut(s) 1402
PspPI GGNCC 1 cut(s) 1400
RsaI GTAC 6 cut(s) 460, 469, 1100, 1149, 1190, 1370
RsaNI GTAC 6 cut(s) 459, 468, 1099, 1148, 1189, 1369
SapI GCTCTTC 1 cut(s) 648
SatI GCNGC 3 cut(s) 389, 1410, 1588
Sau3AI GATC 3 cut(s) 478, 1644, 1795
Sau96I GGNCC 1 cut(s) 1400
ScaI AGTACT 2 cut(s) 460, 1370
SchI GAGTC 4 cut(s) 230, 374, 1460, 1507
ScrFI CCNGG 1 cut(s) 1404
SduI GDGCHC 3 cut(s) 340, 1032, 1538
SfaNI GCATC 4 cut(s) 534, 777, 1132, 1616
SfuI TTCGAA 1 cut(s) 414
SinI GGWCC 1 cut(s) 1400
SmlI CTYRAG 3 cut(s) 339, 589, 1127
SmoI CTYRAG 3 cut(s) 339, 589, 1127
SpeI ACTAGT 2 cut(s) 329, 748
SspMI CTAG 6 cut(s) 330, 351, 441, 749, 840, 1361
StyD4I CCNGG 1 cut(s) 1402
StyI CCWWGG 3 cut(s) 445, 637, 1542
TaaI ACNGT 8 cut(s) 53, 103, 214, 490, 1084, 1343, 1716, 1766
TaiI ACGT 4 cut(s) 260, 303, 314, 1248
TaqI TCGA 9 cut(s) 155, 234, 378, 414, 426, 805, 849, 977, 1040
TatI WGTACW 5 cut(s) 458, 467, 1147, 1188, 1368
TfiI GAWTC 4 cut(s) 192, 221, 836, 1017
TscAI CASTG 2 cut(s) 186, 1725
TseFI GTSAC 2 cut(s) 1716, 1786
TseI GCWGC 3 cut(s) 388, 1409, 1587
Tsp45I GTSAC 2 cut(s) 1716, 1786
TspDTI ATGAA 8 cut(s) 276, 639, 802, 1137, 1208, 1245, 1302, 1607
TspGWI ACGGA 2 cut(s) 585, 959
TspRI CASTG 2 cut(s) 186, 1725
Vha464I CTTAAG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 1400
VspI ATTAAT 2 cut(s) 68, 1668
XapI RAATTY 2 cut(s) 970, 1064
XceI RCATGY 2 cut(s) 662, 1099
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 6 cut(s) 330, 351, 441, 749, 840, 1361
ZrmI AGTACT 2 cut(s) 460, 1370
Zsp2I ATGCAT 1 cut(s) 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.