pycom17g08850

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002548
Physical Location & Seq
Reverse (-)
6669791 .. 6670936
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 948 bp
ATGGCACTTATCACATTCTCCTCGCTCTCTCCCTCTTTGGTCTCAACTAGTACTAGGCATCAAGGATTAATCCATCTTCCAAAAGTTCTGCATCAAAGAACAGTAGGAAAACAACCCTCCTTCGTTTATGTATCAACAAACTCATCACCGTCATCGGAGGTTATCAGTAATCGTCCGGCAGCACAACGGCGATCCGCTCAATACCATCCTACCATTTGGGATTCCAAACTCATCGACTCCTTCACCACTCATTACACATATGAATTGCAGGGGACGCGATTGGAGCGTCTAAAGCAGAACGTTACTGAAACGTTGCTGGCAGCATCAACTAGGAGTACTAAAGACACTACTAGCACTTTATCGATGTTAAAGATTATCGATTCAATGCAGCGATTGGGAGTGGCCTATCATTTCGAAAAGGAGATCCATCGTGCGGCAGTTCTAACTAGCCTTGGTTCTTCCAGTACTGCCAATACACCAAGTGATCTTCACACCGTTGCCTTGCAGTTTCGGATACTACGAGAACATGGTATCCCTATTAGCCCAGATGTGTTTAACAAGTTTAGAACCAGAGACGGAAGATTCGAGGATAGCTTAAGCAAGGATATAGAGGGACTTTTGAGCTTGTATGAAGCCTCACACCTTGGTACGCTTGGGGAAGATCCCAATGTTTTGGAGGAAGCCAAAAGTTTTAGTGCCAAAAAGTTGAGACAATTAGTGGGAACACTGGAGGGTGAAGATGGTTTATTGAAGCAACTAGTTCAGCAATCCATGGAAATCCCCTTACATTGGAGGATGCCAAGGATAGAAGCTCGAAGCTTCATCGATATCTACAAAAAGGACGATTCTAGGAACATGGAGTTGCTTGAATTAGCCAAATTGGATTATAATATTGTCCAATCAGTATATCAGAGAGAGATAAAGGAGCTATCAAGGCAAGAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00902 ko00909 ko01100 ko01110 ko01130 map00900 map00902 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

316

Amino Acids

35.7

Weight (kDa)

8.62

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 73 - 255 2.7e-44 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 888
AccBSI CCGCTC 1 cut(s) 197
AccII CGCG 1 cut(s) 277
AciI CCGC 2 cut(s) 195, 434
AclI AACGTT 2 cut(s) 300, 311
AclWI GGATC 3 cut(s) 186, 418, 656
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 4 cut(s) 52, 337, 466, 649
AfiI CCNNNNNNNGG 2 cut(s) 433, 789
AflII CTTAAG 1 cut(s) 595
AgsI TTSAA 3 cut(s) 384, 751, 869
AhlI ACTAGT 2 cut(s) 47, 757
AloI GAACNNNNNNTCC 2 cut(s) 516, 548
AluBI AGCT 5 cut(s) 594, 624, 812, 819, 928
AluI AGCT 5 cut(s) 594, 624, 812, 819, 928
Alw26I GTCTC 3 cut(s) 46, 567, 703
AlwI GGATC 3 cut(s) 186, 418, 656
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 3 cut(s) 179, 320, 388
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
AseI ATTAAT 1 cut(s) 68
AsuHPI GGTGA 3 cut(s) 138, 235, 746
AsuII TTCGAA 1 cut(s) 414
BbvI GCAGC 3 cut(s) 191, 332, 400
BccI CCATC 4 cut(s) 81, 213, 435, 734
BceAI ACGGC 1 cut(s) 203
BciVI GTATCC 2 cut(s) 507, 542
BcoDI GTCTC 3 cut(s) 46, 567, 703
BcuI ACTAGT 2 cut(s) 47, 757
BfaI CTAG 7 cut(s) 48, 54, 330, 351, 447, 758, 849
BfrI CTTAAG 1 cut(s) 595
BfuI GTATCC 2 cut(s) 507, 542
BisI GCNGC 4 cut(s) 180, 321, 389, 435
BlsI GCNGC 4 cut(s) 181, 322, 390, 436
BmcAI AGTACT 3 cut(s) 52, 337, 466
BmsI GCATC 4 cut(s) 67, 100, 332, 786
BpmI CTGGAG 1 cut(s) 749
Bpu14I TTCGAA 1 cut(s) 414
Bsa29I ATCGAT 3 cut(s) 362, 378, 825
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 4 cut(s) 451, 643, 771, 800
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 789
Bse1I ACTGG 2 cut(s) 462, 732
BseCI ATCGAT 3 cut(s) 362, 378, 825
BseDI CCNNGG 4 cut(s) 451, 643, 771, 800
BseGI GGATG 2 cut(s) 205, 801
BseLI CCNNNNNNNGG 2 cut(s) 433, 789
BseNI ACTGG 2 cut(s) 462, 732
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 3 cut(s) 191, 332, 400
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 404
BshVI ATCGAT 3 cut(s) 362, 378, 825
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 286, 627
BslI CCNNNNNNNGG 2 cut(s) 433, 789
BsmAI GTCTC 3 cut(s) 46, 567, 703
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 2 cut(s) 286, 627
BsnI GGCC 1 cut(s) 404
Bso31I GGTCTC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 414
Bsp143I GATC 4 cut(s) 191, 423, 484, 661
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 2 cut(s) 195, 434
BspANI GGCC 1 cut(s) 404
BspDI ATCGAT 3 cut(s) 362, 378, 825
BspFNI CGCG 1 cut(s) 277
BspPI GGATC 3 cut(s) 186, 418, 656
BspT104I TTCGAA 1 cut(s) 414
BspTI CTTAAG 1 cut(s) 595
BspTNI GGTCTC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 197
BsrI ACTGG 2 cut(s) 462, 732
BssECI CCNNGG 4 cut(s) 451, 643, 771, 800
BssMI GATC 4 cut(s) 191, 423, 484, 661
BssT1I CCWWGG 4 cut(s) 451, 643, 771, 800
Bst4CI ACNGT 3 cut(s) 103, 150, 496
BstAFI CTTAAG 1 cut(s) 595
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 2 cut(s) 205, 801
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 4 cut(s) 194, 426, 487, 664
BstMAI GTCTC 3 cut(s) 46, 567, 703
BstMBI GATC 4 cut(s) 191, 423, 484, 661
BstMWI GCNNNNNNNGC 4 cut(s) 274, 283, 292, 934
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 191, 332, 400
BstX2I RGATCY 2 cut(s) 423, 661
BstXI CCANNNNNNTGG 1 cut(s) 673
BstYI RGATCY 2 cut(s) 423, 661
Bsu15I ATCGAT 3 cut(s) 362, 378, 825
BsuI GTATCC 2 cut(s) 507, 542
BsuRI GGCC 1 cut(s) 404
BsuTUI ATCGAT 3 cut(s) 362, 378, 825
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 2 cut(s) 205, 801
BtsIMutI CAGTG 1 cut(s) 725
Cac8I GCNNGC 1 cut(s) 318
ClaI ATCGAT 3 cut(s) 362, 378, 825
CseI GACGC 2 cut(s) 275, 283
Csp6I GTAC 4 cut(s) 51, 336, 465, 648
CviAII CATG 3 cut(s) 527, 772, 856
CviQI GTAC 4 cut(s) 51, 336, 465, 648
DpnI GATC 4 cut(s) 193, 425, 486, 663
DpnII GATC 4 cut(s) 191, 423, 484, 661
DraIII CACNNNGTG 1 cut(s) 482
Eco130I CCWWGG 4 cut(s) 451, 643, 771, 800
Eco31I GGTCTC 1 cut(s) 46
Eco32I GATATC 1 cut(s) 829
EcoRV GATATC 1 cut(s) 829
EcoT14I CCWWGG 4 cut(s) 451, 643, 771, 800
ErhI CCWWGG 4 cut(s) 451, 643, 771, 800
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 3 cut(s) 530, 775, 859
FaqI GGGAC 2 cut(s) 286, 627
FatI CATG 3 cut(s) 526, 771, 855
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 180, 321, 389, 435
FokI GGATG 2 cut(s) 192, 808
Fsp4HI GCNGC 4 cut(s) 180, 321, 389, 435
FspBI CTAG 7 cut(s) 48, 54, 330, 351, 447, 758, 849
GluI GCNGC 4 cut(s) 180, 321, 389, 435
GsuI CTGGAG 1 cut(s) 749
HaeIII GGCC 1 cut(s) 404
HapII CCGG 1 cut(s) 176
HgaI GACGC 2 cut(s) 275, 283
Hin1II CATG 3 cut(s) 530, 775, 859
HindIII AAGCTT 1 cut(s) 817
HinfI GANTC 5 cut(s) 221, 236, 380, 582, 845
HpaII CCGG 1 cut(s) 176
HphI GGTGA 3 cut(s) 138, 235, 746
Hpy188I TCNGA 3 cut(s) 157, 513, 912
HpyAV CCTTC 2 cut(s) 130, 250
HpyCH4III ACNGT 3 cut(s) 103, 150, 496
HpyCH4IV ACGT 2 cut(s) 300, 311
HpyCH4V TGCA 4 cut(s) 91, 268, 388, 505
HpyF10VI GCNNNNNNNGC 4 cut(s) 274, 283, 292, 934
HpySE526I ACGT 2 cut(s) 300, 311
Hsp92II CATG 3 cut(s) 530, 775, 859
Kzo9I GATC 4 cut(s) 191, 423, 484, 661
LmnI GCTCC 2 cut(s) 283, 925
LpnPI CCDG 7 cut(s) 189, 254, 302, 475, 558, 583, 713
Lsp1109I GCAGC 3 cut(s) 191, 332, 400
LweI GCATC 4 cut(s) 67, 100, 332, 786
MaeI CTAG 7 cut(s) 48, 54, 330, 351, 447, 758, 849
MaeII ACGT 2 cut(s) 300, 311
MaeIII GTNAC 1 cut(s) 301
MalI GATC 4 cut(s) 193, 425, 486, 663
MbiI CCGCTC 1 cut(s) 197
MboI GATC 4 cut(s) 191, 423, 484, 661
MboII GAAGA 6 cut(s) 68, 450, 479, 591, 671, 749
MflI RGATCY 2 cut(s) 423, 661
MluCI AATT 4 cut(s) 263, 713, 869, 878
MlyI GAGTC 1 cut(s) 230
MseI TTAA 4 cut(s) 68, 368, 555, 596
MspCI CTTAAG 1 cut(s) 595
MspI CCGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 4 cut(s) 274, 283, 292, 934
NcoI CCATGG 1 cut(s) 771
NdeI CATATG 1 cut(s) 259
NdeII GATC 4 cut(s) 191, 423, 484, 661
NlaIII CATG 3 cut(s) 530, 775, 859
NspV TTCGAA 1 cut(s) 414
PcsI WCGNNNNNNNCGW 2 cut(s) 517, 582
PfeI GAWTC 4 cut(s) 221, 380, 582, 845
PkrI GCNGC 4 cut(s) 181, 322, 390, 436
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PshBI ATTAAT 1 cut(s) 68
PsiI TTATAA 1 cut(s) 888
Psp1406I AACGTT 2 cut(s) 300, 311
PsuI RGATCY 2 cut(s) 423, 661
RsaI GTAC 4 cut(s) 52, 337, 466, 649
RsaNI GTAC 4 cut(s) 51, 336, 465, 648
SaqAI TTAA 4 cut(s) 68, 368, 555, 596
SatI GCNGC 4 cut(s) 180, 321, 389, 435
Sau3AI GATC 4 cut(s) 191, 423, 484, 661
ScaI AGTACT 3 cut(s) 52, 337, 466
SchI GAGTC 1 cut(s) 230
SetI ASST 9 cut(s) 162, 303, 314, 596, 626, 645, 814, 821, 930
SfaNI GCATC 4 cut(s) 67, 100, 332, 786
SfuI TTCGAA 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
SpeI ACTAGT 2 cut(s) 47, 757
Sse9I AATT 4 cut(s) 263, 713, 869, 878
SsiI CCGC 2 cut(s) 195, 434
SspI AATATT 1 cut(s) 892
SspMI CTAG 7 cut(s) 48, 54, 330, 351, 447, 758, 849
StyI CCWWGG 4 cut(s) 451, 643, 771, 800
TaaI ACNGT 3 cut(s) 103, 150, 496
TaiI ACGT 2 cut(s) 303, 314
TaqI TCGA 7 cut(s) 234, 362, 378, 414, 585, 814, 825
TasI AATT 4 cut(s) 263, 713, 869, 878
TatI WGTACW 3 cut(s) 50, 335, 464
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 4 cut(s) 221, 380, 582, 845
Tru1I TTAA 4 cut(s) 68, 368, 555, 596
Tru9I TTAA 4 cut(s) 68, 368, 555, 596
TscAI CASTG 1 cut(s) 732
TseI GCWGC 3 cut(s) 179, 320, 388
TspDTI ATGAA 3 cut(s) 276, 645, 811
TspGWI ACGGA 1 cut(s) 591
TspRI CASTG 1 cut(s) 732
Vha464I CTTAAG 1 cut(s) 595
VspI ATTAAT 1 cut(s) 68
XspI CTAG 7 cut(s) 48, 54, 330, 351, 447, 758, 849
ZrmI AGTACT 3 cut(s) 52, 337, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.