Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Forward (+)

11203482 .. 11205565

Gene Structure 2084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCGAGGGTGACGGAATTTCCGGTGACAGCTCGCGGTCGCTTGGCTGTGCTCTCAGCCCACCTGGCAGCTGCGACCATCGAGCCCTCTGAGCTCGGACCCTCTCTCGAGCCGCACTGCGCGTCCGCTCACGTCCCACCGCCCGGGAACCTCCGGGGACCTTTGACCATCGTCGACGAGAGGACCGGTAAGAGGTATCAGGTCCAGGTCTCTGAGGAAGGAACCGTCAAAGCCATCGATCTCAAGAAGATCACAACAGGCAAAAATGACAAGGGGCTGAAGGTGTATGATCCAGGCTATCTTAATACCGCCCCTGTTCGATCCTCGATTTGTTATATCGATGGCGACGAGGGGATTCTTAGATATAGAGGCTACCCAATAGAGGAATTGGCTGAGAGTAGTACCTTTTTGGAAGTGGCCTATCTCTTGATGTATGGGAATTTGCCTTCTGAAAGTCAATATGCGGATTGGGAATTTGCCGTTTCTCAGCATTCAGCTGTACCACAGGGAATTTTGGACATTATACAGGCAATACCTCATGATGCACATCCAATGGGCGTACTTGTCAGTGCCATGAGTGCGCTTTCTGTTTTCCATCCTGATGCTAATCCTGCTCTCCGTGGGCAAGAAATTTACAAATCGAAACAAGTGAGAGACAAGCAAATAGCACGCATCCTTGGGAAGGCACCAACCATTGCAGCTGCAGCTTATTTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

240

Amino Acids

25.95

Weight (kDa)

6.38

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synt	PF00285	99 - 237	5.1e-36	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	685
AccBSI	CCGCTC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	2 cut(s)	36, 122
AciI	CCGC	6 cut(s)	36, 113, 126, 140, 309, 464
AclWI	GGATC	2 cut(s)	284, 315
AcsI	RAATTY	5 cut(s)	17, 439, 473, 510, 630
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	3 cut(s)	403, 501, 561
AfiI	CCNNNNNNNGG	4 cut(s)	143, 192, 382, 682
AgeI	ACCGGT	1 cut(s)	185
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	63, 204, 292
AluBI	AGCT	6 cut(s)	32, 71, 94, 497, 701, 707
AluI	AGCT	6 cut(s)	32, 71, 94, 497, 701, 707
Alw21I	GWGCWC	2 cut(s)	54, 96
Alw26I	GTCTC	2 cut(s)	214, 648
AlwI	GGATC	2 cut(s)	284, 315
Ama87I	CYCGRG	2 cut(s)	107, 143
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	5 cut(s)	68, 71, 698, 701, 704
ApoI	RAATTY	5 cut(s)	17, 439, 473, 510, 630
AsiGI	ACCGGT	1 cut(s)	185
AspLEI	GCGC	2 cut(s)	122, 583
AspS9I	GGNCC	4 cut(s)	98, 158, 183, 202
AsuC2I	CCSGG	3 cut(s)	144, 145, 155
AsuHPI	GGTGA	2 cut(s)	22, 37
AvaI	CYCGRG	2 cut(s)	107, 143
AvaII	GGWCC	4 cut(s)	98, 158, 183, 202
BanI	GGYRCC	1 cut(s)	685
BanII	GRGCYC	2 cut(s)	87, 96
Bbv12I	GWGCWC	2 cut(s)	54, 96
BbvI	GCAGC	5 cut(s)	58, 80, 688, 710, 716
BccI	CCATC	5 cut(s)	86, 176, 242, 335, 603
BceAI	ACGGC	1 cut(s)	464
BciT130I	CCWGG	3 cut(s)	65, 206, 294
BcnI	CCSGG	3 cut(s)	144, 145, 155
BcoDI	GTCTC	2 cut(s)	214, 648
BfmI	CTRYAG	1 cut(s)	702
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
BlsI	GCNGC	6 cut(s)	70, 73, 114, 700, 703, 706
Bme1390I	CCNGG	6 cut(s)	65, 144, 145, 155, 206, 294
Bme18I	GGWCC	4 cut(s)	98, 158, 183, 202
BmeT110I	CYCGRG	2 cut(s)	107, 143
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	4 cut(s)	98, 158, 183, 202
BmiI	GGNNCC	5 cut(s)	100, 149, 159, 223, 687
BmrFI	CCNGG	6 cut(s)	65, 144, 145, 155, 206, 294
BmsI	GCATC	3 cut(s)	532, 592, 681
BoxI	GACNNNNGTC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	3 cut(s)	144, 145, 155
Bsa29I	ATCGAT	2 cut(s)	237, 339
BsaBI	GATNNNNATC	2 cut(s)	546, 606
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	4 cut(s)	143, 154, 619, 676
BsaWI	WCCGGW	2 cut(s)	22, 185
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 192, 382, 682
Bse118I	RCCGGY	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	693
Bse8I	GATNNNNATC	2 cut(s)	546, 606
BseBI	CCWGG	3 cut(s)	65, 206, 294
BseCI	ATCGAT	2 cut(s)	237, 339
BseDI	CCNNGG	4 cut(s)	143, 154, 619, 676
BseGI	GGATG	3 cut(s)	547, 595, 672
BseJI	GATNNNNATC	2 cut(s)	546, 606
BseLI	CCNNNNNNNGG	4 cut(s)	143, 192, 382, 682
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	5 cut(s)	69, 81, 204, 384, 500
BseXI	GCAGC	5 cut(s)	58, 80, 688, 710, 716
Bsh1236I	CGCG	2 cut(s)	36, 122
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	685
BshTI	ACCGGT	1 cut(s)	185
BshVI	ATCGAT	2 cut(s)	237, 339
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	54, 96
BsiHKCI	CYCGRG	2 cut(s)	107, 143
BsiSI	CCGG	4 cut(s)	23, 144, 154, 186
BslFI	GGGAC	2 cut(s)	119, 171
BslI	CCNNNNNNNGG	4 cut(s)	143, 192, 382, 682
BsmAI	GTCTC	2 cut(s)	214, 648
BsmFI	GGGAC	2 cut(s)	119, 171
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	214
BsoBI	CYCGRG	2 cut(s)	107, 143
Bsp1286I	GDGCHC	3 cut(s)	54, 87, 96
Bsp143I	GATC	4 cut(s)	238, 249, 289, 320
BspACI	CCGC	6 cut(s)	36, 113, 126, 140, 309, 464
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	5 cut(s)	68, 82, 205, 385, 499
BspDI	ATCGAT	2 cut(s)	237, 339
BspFNI	CGCG	2 cut(s)	36, 122
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	5 cut(s)	100, 149, 159, 223, 687
BspMAI	CTGCAG	1 cut(s)	706
BspPI	GGATC	2 cut(s)	284, 315
BspT107I	GGYRCC	1 cut(s)	685
BspTNI	GGTCTC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	143, 154, 619, 676
BssMI	GATC	4 cut(s)	238, 249, 289, 320
BssT1I	CCWWGG	1 cut(s)	676
Bst2UI	CCWGG	3 cut(s)	65, 206, 294
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	34, 670
BstDEI	CTNAG	6 cut(s)	55, 90, 213, 359, 393, 486
BstDSI	CCRYGG	1 cut(s)	619
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	547, 595, 672
BstFNI	CGCG	2 cut(s)	36, 122
BstHHI	GCGC	2 cut(s)	122, 583
BstKTI	GATC	4 cut(s)	241, 252, 292, 323
BstMAI	GTCTC	2 cut(s)	214, 648
BstMBI	GATC	4 cut(s)	238, 249, 289, 320
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 91, 578, 611, 704
BstNI	CCWGG	3 cut(s)	65, 206, 294
BstPAI	GACNNNNGTC	1 cut(s)	170
BstSCI	CCNGG	6 cut(s)	63, 142, 143, 153, 204, 292
BstSFI	CTRYAG	1 cut(s)	702
BstUI	CGCG	2 cut(s)	36, 122
BstV1I	GCAGC	5 cut(s)	58, 80, 688, 710, 716
Bsu15I	ATCGAT	2 cut(s)	237, 339
BsuRI	GGCC	1 cut(s)	419
BsuTUI	ATCGAT	2 cut(s)	237, 339
BtgI	CCRYGG	1 cut(s)	619
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	547, 595, 672
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 574
Cac8I	GCNNGC	2 cut(s)	34, 670
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	2 cut(s)	122, 583
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	4 cut(s)	98, 158, 183, 202
Cfr9I	CCCGGG	1 cut(s)	143
ClaI	ATCGAT	2 cut(s)	237, 339
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	402, 500, 560
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	2 cut(s)	539, 574
CviQI	GTAC	3 cut(s)	402, 500, 560
DdeI	CTNAG	6 cut(s)	55, 90, 213, 359, 393, 486
DpnI	GATC	4 cut(s)	240, 251, 291, 322
DpnII	GATC	4 cut(s)	238, 249, 289, 320
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	2 cut(s)	87, 96
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	4 cut(s)	98, 158, 183, 202
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	2 cut(s)	107, 143
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	63, 204, 292
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	87, 96
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	2 cut(s)	542, 577
FaiI	YATR	8 cut(s)	288, 336, 366, 435, 462, 524, 540, 575
FaqI	GGGAC	2 cut(s)	119, 171
FatI	CATG	2 cut(s)	538, 573
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
FokI	GGATG	3 cut(s)	534, 582, 659
FriOI	GRGCYC	2 cut(s)	87, 96
Fsp4HI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
GlaI	GCGC	2 cut(s)	121, 582
GluI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	4 cut(s)	23, 144, 154, 186
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	2 cut(s)	122, 583
Hin1II	CATG	2 cut(s)	542, 577
Hin6I	GCGC	2 cut(s)	120, 581
HinP1I	GCGC	2 cut(s)	120, 581
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	4 cut(s)	23, 144, 154, 186
HphI	GGTGA	2 cut(s)	22, 37
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	4 cut(s)	91, 98, 214, 451
Hpy188III	TCNNGA	5 cut(s)	107, 244, 427, 539, 599
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	3 cut(s)	176, 179, 350
HpyAV	CCTTC	4 cut(s)	212, 274, 456, 676
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	545, 698, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 91, 578, 611, 704
HpyF3I	CTNAG	6 cut(s)	55, 90, 213, 359, 393, 486
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	542, 577
HspAI	GCGC	2 cut(s)	120, 581
Kzo9I	GATC	4 cut(s)	238, 249, 289, 320
Lsp1109I	GCAGC	5 cut(s)	58, 80, 688, 710, 716
LweI	GCATC	3 cut(s)	532, 592, 681
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	10, 25
MalI	GATC	4 cut(s)	240, 251, 291, 322
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	4 cut(s)	238, 249, 289, 320
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	3 cut(s)	54, 87, 96
MluCI	AATT	6 cut(s)	17, 386, 439, 473, 510, 630
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	3 cut(s)	71, 497, 701
MspI	CCGG	4 cut(s)	23, 144, 154, 186
MspR9I	CCNGG	6 cut(s)	65, 144, 145, 155, 206, 294
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	3 cut(s)	65, 206, 294
MvnI	CGCG	2 cut(s)	36, 122
MwoI	GCNNNNNNNGC	5 cut(s)	65, 91, 578, 611, 704
NciI	CCSGG	3 cut(s)	144, 145, 155
NdeII	GATC	4 cut(s)	238, 249, 289, 320
NlaIII	CATG	2 cut(s)	542, 577
NlaIV	GGNNCC	5 cut(s)	100, 149, 159, 223, 687
NmuCI	GTSAC	2 cut(s)	10, 25
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	185
PkrI	GCNGC	6 cut(s)	70, 73, 114, 700, 703, 706
PpuMI	RGGWCCY	1 cut(s)	158
PshAI	GACNNNNGTC	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	63, 204, 292
PspGI	CCWGG	3 cut(s)	63, 204, 292
PspN4I	GGNNCC	5 cut(s)	100, 149, 159, 223, 687
PspPI	GGNCC	4 cut(s)	98, 158, 183, 202
PspPPI	RGGWCCY	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	706
PvuII	CAGCTG	3 cut(s)	71, 497, 701
RsaI	GTAC	3 cut(s)	403, 501, 561
RsaNI	GTAC	3 cut(s)	402, 500, 560
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	6 cut(s)	69, 72, 113, 699, 702, 705
Sau3AI	GATC	4 cut(s)	238, 249, 289, 320
Sau96I	GGNCC	4 cut(s)	98, 158, 183, 202
ScrFI	CCNGG	6 cut(s)	65, 144, 145, 155, 206, 294
SduI	GDGCHC	3 cut(s)	54, 87, 96
SfaNI	GCATC	3 cut(s)	532, 592, 681
SfcI	CTRYAG	1 cut(s)	702
Sfr274I	CTCGAG	1 cut(s)	107
SgrDI	CGTCGACG	1 cut(s)	173
SinI	GGWCC	4 cut(s)	98, 158, 183, 202
SlaI	CTCGAG	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	2 cut(s)	107, 242
SmoI	CTYRAG	2 cut(s)	107, 242
Sse9I	AATT	6 cut(s)	17, 386, 439, 473, 510, 630
SsiI	CCGC	6 cut(s)	36, 113, 126, 140, 309, 464
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	6 cut(s)	63, 142, 143, 153, 204, 292
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	9 cut(s)	5, 81, 108, 174, 237, 319, 326, 339, 641
TasI	AATT	6 cut(s)	17, 386, 439, 473, 510, 630
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	122, 574
TseFI	GTSAC	2 cut(s)	10, 25
TseI	GCWGC	5 cut(s)	68, 71, 698, 701, 704
Tsp45I	GTSAC	2 cut(s)	10, 25
TspGWI	ACGGA	2 cut(s)	29, 608
TspMI	CCCGGG	1 cut(s)	143
TspRI	CASTG	2 cut(s)	122, 574
VpaK11BI	GGWCC	4 cut(s)	98, 158, 183, 202
XagI	CCTNNNNNAGG	1 cut(s)	680
XapI	RAATTY	5 cut(s)	17, 439, 473, 510, 630
XhoI	CTCGAG	1 cut(s)	107
XmaI	CCCGGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.