Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Forward (+)

11205626 .. 11207367

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTAGATTCCTTAGGCAATAGATCTTACAAACCCAATCCTCGACTGGCTCGAGTGCTAGATGTTCTCTTCATATTGCATGCAGAACATGAGATGAATTGCTCCACAGCTGCTGCCCGGCATCTGGCATCAAGCGGTGTCGATGTTTACACTGCTCTTGCTGGAGCTACTGGAGCTCTCTATGGCCCTCTTCATGGTGGAGCAAATGAGGCTGTGCTTAAGATGCTAAATGAGATTGGCACTGTTGAGAACATTCCAAATTTCATAGAGGGTGTGAAGAACAGGAAGCGAAAGATGTCAGGTTTTGGGCATCGCGTGTACAAAAACTACGATCGATCTAGATCAAAGGTCATAAGGAAACTGGCAGAGGAAGTATTTTCCATTGTTGGAAGGGATCCTCTGATTGAGGTAGCTGTTGCTTTGGAGAAGGCTGCACTTTCTGACGAGTATTTTGTCAAGAGAAAGCTCTATCCAAATGTTGATTTCTACTCTGGATTAATTTATAGGGCAATGGGATTTCCAACTGAGTTCTTCCCAGTTTTGTTCGCGATCCCTCGAATGGCTGGGTGGTTGGCACACTGGCGAGAATCCCTTGATGATCCTGATACTAAGATCATGAGACCCCAACAGGTGTATACTGGAAACTGGCTGCGCCACTATATCCCACCGAGAGAGCGCATAGTAACAAGTGATGCAGACAAGCTCTCTCAGGTTTCTGTATCAAATGCCTCTAGGCGTCGGCTGGCTGGATCTGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

254

Amino Acids

28.4

Weight (kDa)

9.62

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synt	PF00285	9 - 209	2.4e-83	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	635
AccII	CGCG	2 cut(s)	315, 548
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	5 cut(s)	389, 402, 544, 593, 757
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	124, 194, 559
AflII	CTTAAG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	110, 167, 176, 413, 466, 703
AluI	AGCT	6 cut(s)	110, 167, 176, 413, 466, 703
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	5 cut(s)	389, 402, 544, 593, 757
AlwNI	CAGNNNCTG	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	4 cut(s)	110, 113, 431, 649
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AseI	ATTAAT	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	654, 678
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	13
BamHI	GGATCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	97, 100, 418, 636
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	4 cut(s)	5, 59, 339, 732
BfrI	CTTAAG	1 cut(s)	218
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	4 cut(s)	111, 114, 432, 650
BlsI	GCNGC	4 cut(s)	112, 115, 433, 651
Bme1390I	CCNGG	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	5 cut(s)	130, 137, 213, 319, 682
BmuI	ACTGGG	1 cut(s)	530
BpmI	CTGGAG	2 cut(s)	183, 192
BpuMI	CCSGG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 194, 559
Bse1I	ACTGG	7 cut(s)	51, 175, 366, 536, 584, 643, 650
Bse21I	CCTNAGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	340
BseLI	CCNNNNNNNGG	3 cut(s)	124, 194, 559
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	516, 722
BseNI	ACTGG	7 cut(s)	51, 175, 366, 536, 584, 643, 650
BseXI	GCAGC	4 cut(s)	97, 100, 418, 636
BseYI	CCCAGC	1 cut(s)	563
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	2 cut(s)	315, 548
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	3 cut(s)	124, 194, 559
BsmAI	GTCTC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	613
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
Bsp68I	TCGCGA	1 cut(s)	548
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	517, 721
BspDI	ATCGAT	1 cut(s)	334
BspFNI	CGCG	2 cut(s)	315, 548
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	5 cut(s)	389, 402, 544, 593, 757
BspTI	CTTAAG	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	516
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	7 cut(s)	51, 175, 366, 536, 584, 643, 650
BssMI	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
BssNAI	GTATAC	1 cut(s)	636
BssNI	GRCGYC	1 cut(s)	736
Bst1107I	GTATAC	1 cut(s)	636
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	74, 195
BstACI	GRCGYC	1 cut(s)	736
BstAFI	CTTAAG	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	81, 744
BstDEI	CTNAG	4 cut(s)	13, 525, 609, 708
BstFNI	CGCG	2 cut(s)	315, 548
BstHHI	GCGC	2 cut(s)	654, 678
BstKTI	GATC	9 cut(s)	26, 334, 338, 344, 397, 552, 601, 615, 752
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 209, 223
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	116
BstUI	CGCG	2 cut(s)	315, 548
BstV1I	GCAGC	4 cut(s)	97, 100, 418, 636
BstX2I	RGATCY	3 cut(s)	23, 394, 749
BstYI	RGATCY	3 cut(s)	23, 394, 749
BstZ17I	GTATAC	1 cut(s)	636
Bsu15I	ATCGAT	1 cut(s)	334
Bsu36I	CCTNAGG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	296
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	3 cut(s)	150, 240, 577
BtuMI	TCGCGA	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	81, 744
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	2 cut(s)	654, 678
Cfr13I	GGNCC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	334
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	4 cut(s)	80, 89, 194, 616
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	13, 525, 609, 708
DpnI	GATC	9 cut(s)	25, 333, 337, 343, 396, 551, 600, 614, 751
DpnII	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
Eam1104I	CTCTTC	2 cut(s)	74, 195
EarI	CTCTTC	2 cut(s)	74, 195
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	4 cut(s)	83, 92, 197, 619
FatI	CATG	4 cut(s)	79, 88, 193, 615
FblI	GTMKAC	1 cut(s)	635
Fnu4HI	GCNGC	4 cut(s)	111, 114, 432, 650
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	111, 114, 432, 650
FspBI	CTAG	4 cut(s)	5, 59, 339, 732
GlaI	GCGC	2 cut(s)	653, 677
GluI	GCNGC	4 cut(s)	111, 114, 432, 650
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	2 cut(s)	183, 192
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	2 cut(s)	654, 678
Hin1I	GRCGYC	1 cut(s)	736
Hin1II	CATG	4 cut(s)	83, 92, 197, 619
Hin6I	GCGC	2 cut(s)	652, 676
HinP1I	GCGC	2 cut(s)	652, 676
HinfI	GANTC	2 cut(s)	8, 587
HpaII	CCGG	1 cut(s)	118
Hpy166II	GTNNAC	3 cut(s)	148, 319, 636
Hpy188I	TCNGA	2 cut(s)	402, 442
Hpy188III	TCNNGA	7 cut(s)	339, 457, 492, 547, 602, 616, 753
Hpy8I	GTNNAC	3 cut(s)	148, 319, 636
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	2 cut(s)	384, 421
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	79, 83, 434, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 209, 223
HpyF3I	CTNAG	4 cut(s)	13, 525, 609, 708
Hsp92I	GRCGYC	1 cut(s)	736
Hsp92II	CATG	4 cut(s)	83, 92, 197, 619
HspAI	GCGC	2 cut(s)	652, 676
Kzo9I	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
LmnI	GCTCC	4 cut(s)	107, 164, 173, 200
Lsp1109I	GCAGC	4 cut(s)	97, 100, 418, 636
LweI	GCATC	5 cut(s)	130, 137, 213, 319, 682
MaeI	CTAG	4 cut(s)	5, 59, 339, 732
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	9 cut(s)	25, 333, 337, 343, 396, 551, 600, 614, 751
MboI	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
MboII	GAAGA	4 cut(s)	61, 182, 289, 523
MflI	RGATCY	3 cut(s)	23, 394, 749
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	3 cut(s)	97, 259, 498
MmeI	TCCRAC	2 cut(s)	367, 545
MnlI	CCTC	9 cut(s)	51, 198, 202, 262, 361, 400, 408, 564, 739
MseI	TTAA	2 cut(s)	219, 497
MspA1I	CMGCKG	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	118
MvnI	CGCG	2 cut(s)	315, 548
MwoI	GCNNNNNNNGC	3 cut(s)	173, 209, 223
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
NlaIII	CATG	4 cut(s)	83, 92, 197, 619
NlaIV	GGNNCC	1 cut(s)	396
NruI	TCGCGA	1 cut(s)	548
NspI	RCATGY	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	51
PagI	TCATGA	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	8, 587
PkrI	GCNGC	4 cut(s)	112, 115, 433, 651
Ple19I	CGATCG	1 cut(s)	334
PshBI	ATTAAT	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	563
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	185
PspXI	VCTCGAGB	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	3 cut(s)	23, 394, 749
PvuI	CGATCG	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	110
RruI	TCGCGA	1 cut(s)	548
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	219, 497
SatI	GCNGC	4 cut(s)	111, 114, 432, 650
Sau3AI	GATC	9 cut(s)	23, 331, 335, 341, 394, 549, 598, 612, 749
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	5 cut(s)	130, 137, 213, 319, 682
Sfr274I	CTCGAG	1 cut(s)	51
SlaI	CTCGAG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	51, 218
SmoI	CTYRAG	2 cut(s)	51, 218
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	3 cut(s)	97, 259, 498
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	4 cut(s)	5, 59, 339, 732
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	5 cut(s)	43, 52, 141, 334, 556
TasI	AATT	3 cut(s)	97, 259, 498
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	8, 587
Tru1I	TTAA	2 cut(s)	219, 497
Tru9I	TTAA	2 cut(s)	219, 497
TscAI	CASTG	3 cut(s)	157, 247, 584
TseI	GCWGC	4 cut(s)	110, 113, 431, 649
TspDTI	ATGAA	4 cut(s)	61, 110, 182, 253
TspRI	CASTG	3 cut(s)	157, 247, 584
Vha464I	CTTAAG	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	497
XapI	RAATTY	1 cut(s)	259
XbaI	TCTAGA	1 cut(s)	338
XceI	RCATGY	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	635
XspI	CTAG	4 cut(s)	5, 59, 339, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.