pycom17g21800

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0003298
Physical Location & Seq
Forward (+)
20234843 .. 20237027
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 558 bp
ATGATGCGAAGGAAAAATGGTAGTGGTGGCACTGGTACTAGTACAACGATGAGGGTTTTGAATCTGATCGAGAGGCGGTGTTTGGCACCGCTCAAGCGAAACGACGACCTTCGCGAAAACGGCATGCGGATTTCCTCCCGCCACAGCTCGTACAAGAAGCTCGTTCAGCTTCCGCTCCTCAAGCTCTCCGTTCTCAAGCTCGACGGCTCTGTTTTCGAAATTCAGGTTGGGAGGACTGCCACAATAGCAGAGCTCAAACAAGCAGTAGAAGATTTCTTTGGTCCCTCCCAAGACAAGATTCCATGGTCACTGGTTTGGGGGCATTTCTGCTTGTGTCATGTTGGTCAGAAGTTGATTAATGACAGGGCGTACATTCGGAATTTCGGAATTAAGGACGGTGATCAACTTGAATTCATTAGGCATATGTCCATCAGCAACTCACCATTGAAAAAAGGGTCGAAGAATGAGAGTGTTCCATACAAACAGCAACCTATGTTGACGTATGGGCCAAGTTACTATCCCAATGAAGATCGATCTGGAGGCAGGTCATGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

186

Amino Acids

20.92

Weight (kDa)

9.78

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 60 - 141 4.5e-22 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 85
AccBSI CCGCTC 2 cut(s) 91, 175
AccII CGCG 1 cut(s) 114
AciI CCGC 5 cut(s) 76, 89, 127, 139, 173
AcsI RAATTY 3 cut(s) 219, 379, 410
AfaI GTAC 4 cut(s) 37, 43, 152, 371
AgsI TTSAA 3 cut(s) 61, 410, 448
AhlI ACTAGT 1 cut(s) 38
AjuI GAANNNNNNNTTGG 6 cut(s) 210, 242, 261, 282, 293, 314
AluBI AGCT 6 cut(s) 147, 160, 169, 184, 199, 253
AluI AGCT 6 cut(s) 147, 160, 169, 184, 199, 253
Alw21I GWGCWC 1 cut(s) 255
AoxI GGCC 1 cut(s) 506
ApoI RAATTY 3 cut(s) 219, 379, 410
AseI ATTAAT 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 281, 506
AsuHPI GGTGA 2 cut(s) 410, 432
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BccI CCATC 1 cut(s) 437
BceAI ACGGC 2 cut(s) 136, 220
BclI TGATCA 1 cut(s) 400
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 534
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 281, 506
BmiI GGNNCC 2 cut(s) 87, 283
BpmI CTGGAG 1 cut(s) 558
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 3 cut(s) 77, 164, 179
Bsa29I ATCGAT 1 cut(s) 532
BsaJI CCNNGG 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 37, 315
BseCI ATCGAT 1 cut(s) 532
BseDI CCNNGG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 37, 315
BseRI GAGGAG 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 508
BshNI GGYRCC 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 532
BsiHKAI GWGCWC 1 cut(s) 255
BslFI GGGAC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 1 cut(s) 508
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 4 cut(s) 66, 400, 529, 533
Bsp19I CCATGG 1 cut(s) 302
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 5 cut(s) 76, 89, 127, 139, 173
BspANI GGCC 1 cut(s) 508
BspDI ATCGAT 1 cut(s) 532
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 87, 283
BspMI ACCTGC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 85
BsrBI CCGCTC 2 cut(s) 91, 175
BsrI ACTGG 2 cut(s) 37, 315
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 4 cut(s) 66, 400, 529, 533
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 398
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 125
BstDSI CCRYGG 1 cut(s) 302
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 4 cut(s) 69, 403, 532, 536
BstMBI GATC 4 cut(s) 66, 400, 529, 533
BstMWI GCNNNNNNNGC 4 cut(s) 120, 166, 181, 245
BstNSI RCATGY 1 cut(s) 127
BstUI CGCG 1 cut(s) 114
Bsu15I ATCGAT 1 cut(s) 532
BsuRI GGCC 1 cut(s) 508
BsuTUI ATCGAT 1 cut(s) 532
BtgI CCRYGG 1 cut(s) 302
BtsIMutI CAGTG 2 cut(s) 30, 308
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 281, 506
ClaI ATCGAT 1 cut(s) 532
Csp6I GTAC 4 cut(s) 36, 42, 151, 370
CviAII CATG 4 cut(s) 124, 303, 338, 549
CviJI RGCY 8 cut(s) 147, 160, 169, 184, 199, 207, 253, 508
CviKI_1 RGCY 8 cut(s) 147, 160, 169, 184, 199, 207, 253, 508
CviQI GTAC 4 cut(s) 36, 42, 151, 370
DpnI GATC 4 cut(s) 68, 402, 531, 535
DpnII GATC 4 cut(s) 66, 400, 529, 533
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 4 cut(s) 127, 306, 341, 552
FaiI YATR 9 cut(s) 125, 304, 339, 423, 425, 478, 494, 504, 550
FaqI GGGAC 1 cut(s) 267
FatI CATG 4 cut(s) 123, 302, 337, 548
FauI CCCGC 1 cut(s) 146
FauNDI CATATG 1 cut(s) 423
FbaI TGATCA 1 cut(s) 400
FriOI GRGCYC 1 cut(s) 255
FspBI CTAG 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 1 cut(s) 508
Hin1II CATG 4 cut(s) 127, 306, 341, 552
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 2 cut(s) 61, 298
HphI GGTGA 2 cut(s) 410, 432
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 4 cut(s) 66, 348, 378, 386
Hpy188III TCNNGA 3 cut(s) 70, 113, 537
Hpy8I GTNNAC 1 cut(s) 498
Hpy99I CGWCG 2 cut(s) 107, 206
HpyAV CCTTC 2 cut(s) 3, 119
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 500
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 166, 181, 245
HpySE526I ACGT 1 cut(s) 500
Hsp92II CATG 4 cut(s) 127, 306, 341, 552
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 4 cut(s) 66, 400, 529, 533
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 18, 209, 296, 349, 522, 529
MaeI CTAG 1 cut(s) 39
MaeII ACGT 1 cut(s) 500
MaeIII GTNAC 2 cut(s) 306, 512
MalI GATC 4 cut(s) 68, 402, 531, 535
MbiI CCGCTC 2 cut(s) 91, 175
MboI GATC 4 cut(s) 66, 400, 529, 533
MboII GAAGA 3 cut(s) 281, 472, 539
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 4 cut(s) 219, 379, 387, 410
MnlI CCTC 7 cut(s) 45, 66, 145, 188, 225, 295, 533
MseI TTAA 2 cut(s) 357, 390
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 4 cut(s) 120, 166, 181, 245
NcoI CCATGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 423
NdeII GATC 4 cut(s) 66, 400, 529, 533
NlaIII CATG 4 cut(s) 127, 306, 341, 552
NlaIV GGNNCC 2 cut(s) 87, 283
NmuCI GTSAC 1 cut(s) 306
NruI TCGCGA 1 cut(s) 114
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 1 cut(s) 216
PaeI GCATGC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 2 cut(s) 61, 298
PshBI ATTAAT 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 87, 283
PspPI GGNCC 2 cut(s) 281, 506
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 4 cut(s) 37, 43, 152, 371
RsaNI GTAC 4 cut(s) 36, 42, 151, 370
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 357, 390
Sau3AI GATC 4 cut(s) 66, 400, 529, 533
Sau96I GGNCC 2 cut(s) 281, 506
SduI GDGCHC 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 1 cut(s) 281
SmlI CTYRAG 3 cut(s) 92, 179, 194
SmoI CTYRAG 3 cut(s) 92, 179, 194
SpeI ACTAGT 1 cut(s) 38
SphI GCATGC 1 cut(s) 127
Sse9I AATT 4 cut(s) 219, 379, 387, 410
SsiI CCGC 5 cut(s) 76, 89, 127, 139, 173
SspMI CTAG 1 cut(s) 39
SstI GAGCTC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 503
TaqI TCGA 5 cut(s) 69, 201, 216, 458, 532
TasI AATT 4 cut(s) 219, 379, 387, 410
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 2 cut(s) 61, 298
Tru1I TTAA 2 cut(s) 357, 390
Tru9I TTAA 2 cut(s) 357, 390
TscAI CASTG 2 cut(s) 37, 315
TseFI GTSAC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 2 cut(s) 403, 540
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 2 cut(s) 37, 315
VpaK11BI GGWCC 1 cut(s) 281
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 3 cut(s) 219, 379, 410
XceI RCATGY 1 cut(s) 127
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.