pycom290g00070

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_290
OG0002570
Physical Location & Seq
Reverse (-)
81532 .. 83757
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGGACGAAGAGTATGACGTCATAGTGTTGGGAACAGGTCTGAAAGAATGCATCCTCAGCGGTCTTCTCTCCGTTGACGGCCTCAAGGTTCTGCACATAGATCGGAACGATTATTATGGTGGAGAGTGTGCATCACTTAATCTTGTCCAGCTATGGAAGAGGATCAGGGGAGATGACAAGCCCCCAGCACATTTGGGATCTAGTAGGGATTATAACGTGGACATGGTCCCTAAGTTTATGATGGCCAATGGCACTCTAGTGCGTGTCCTCATTCACACAAATGTCACCAAGTATTTGTACTTCAAAGCTGTGGATGGTAGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAACTGACATGGAGGCCCTTAAATCTCCACTCATGGGTCTGTTTGAAAAGCGCCGTGCACGCAAGTTCATCCTGTATGTTCAAGATTATAGTGAAACTGATCCTAAAACACATGAGGGAATGGACTTAACAAGAGTAACAACTAGAGATTTGATCGCAAAATATGGTCTCGATGACAACACTGTTGACTTCATTGGGCATGCTTTGGCACTTCATAGGGATGATCGCTACCTGAATGAACCTGCTCTAGATACCGTGAAGAGAATGAAGCTTTATGCGGAGTCATTTGCACGTTTTCAAGGAGGATCGATCACCATACATATATCCTCTGTATGGATTAGGAGAGCTTCCCCAGGCATTTGCCCGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

243

Amino Acids

27.41

Weight (kDa)

8.31

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 220 3.7e-116 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 607
AciI CCGC 2 cut(s) 60, 635
AclWI GGATC 4 cut(s) 170, 205, 452, 670
AcoI YGGCCR 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 392, 690
AgsI TTSAA 4 cut(s) 304, 404, 440, 656
AjnI CCWGG 1 cut(s) 709
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 4 cut(s) 151, 308, 628, 704
AluI AGCT 4 cut(s) 151, 308, 628, 704
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 530
Alw44I GTGCAC 1 cut(s) 414
AlwI GGATC 4 cut(s) 170, 205, 452, 670
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 3 cut(s) 79, 243, 372
ApaLI GTGCAC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 2 cut(s) 226, 373
AsuHPI GGTGA 2 cut(s) 277, 661
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 418
BalI TGGCCA 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 284, 316
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 418
BbvCI CCTCAGC 1 cut(s) 56
BccI CCATC 2 cut(s) 235, 308
BceAI ACGGC 2 cut(s) 94, 396
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 711
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 4 cut(s) 201, 257, 501, 605
BfoI RGCGCY 1 cut(s) 412
BfuAI ACCTGC 1 cut(s) 607
Bme1390I CCNGG 1 cut(s) 711
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 226, 373
BmiI GGNNCC 2 cut(s) 228, 354
BmrFI CCNGG 1 cut(s) 711
BmsI GCATC 2 cut(s) 60, 140
BpiI GAAGAC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 68
Bsa29I ATCGAT 1 cut(s) 665
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 709
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 690
BseBI CCWGG 1 cut(s) 711
BseCI ATCGAT 1 cut(s) 665
BseDI CCNNGG 1 cut(s) 709
BseGI GGATG 4 cut(s) 51, 319, 426, 583
BseLI CCNNNNNNNGG 2 cut(s) 392, 690
BseMII CTCAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 418
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 77
BshFI GGCC 3 cut(s) 81, 245, 374
BshVI ATCGAT 1 cut(s) 665
BsiHKAI GWGCWC 1 cut(s) 418
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 392, 690
BsmAI GTCTC 1 cut(s) 530
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 3 cut(s) 81, 245, 374
Bso31I GGTCTC 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 8 cut(s) 100, 162, 197, 457, 510, 580, 662, 666
BspACI CCGC 2 cut(s) 60, 635
BspANI GGCC 3 cut(s) 81, 245, 374
BspCNI CTCAG 1 cut(s) 69
BspDI ATCGAT 1 cut(s) 665
BspLI GGNNCC 2 cut(s) 228, 354
BspMI ACCTGC 1 cut(s) 607
BspPI GGATC 4 cut(s) 170, 205, 452, 670
BspTNI GGTCTC 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 709
BssMI GATC 8 cut(s) 100, 162, 197, 457, 510, 580, 662, 666
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 2 cut(s) 541, 613
Bst6I CTCTTC 3 cut(s) 3, 152, 611
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 418, 558
BstDEI CTNAG 3 cut(s) 56, 231, 726
BstF5I GGATG 4 cut(s) 51, 319, 426, 583
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 8 cut(s) 103, 165, 200, 460, 513, 583, 665, 669
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 8 cut(s) 100, 162, 197, 457, 510, 580, 662, 666
BstMWI GCNNNNNNNGC 2 cut(s) 57, 417
BstNI CCWGG 1 cut(s) 711
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 1 cut(s) 709
BstSLI GKGCMC 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
Bsu15I ATCGAT 1 cut(s) 665
BsuRI GGCC 3 cut(s) 81, 245, 374
BsuTUI ATCGAT 1 cut(s) 665
BtsCI GGATG 4 cut(s) 51, 319, 426, 583
BtsIMutI CAGTG 1 cut(s) 537
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 2 cut(s) 418, 558
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 2 cut(s) 226, 373
ClaI ATCGAT 1 cut(s) 665
Csp6I GTAC 1 cut(s) 298
CviAII CATG 5 cut(s) 223, 367, 391, 470, 557
CviJI RGCY 8 cut(s) 81, 151, 181, 245, 308, 374, 628, 704
CviKI_1 RGCY 8 cut(s) 81, 151, 181, 245, 308, 374, 628, 704
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 56, 231, 726
DpnI GATC 8 cut(s) 102, 164, 199, 459, 512, 582, 664, 668
DpnII GATC 8 cut(s) 100, 162, 197, 457, 510, 580, 662, 666
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 3 cut(s) 3, 152, 611
EarI CTCTTC 3 cut(s) 3, 152, 611
Eco31I GGTCTC 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 709
EcoT22I ATGCAT 1 cut(s) 53
FaeI CATG 5 cut(s) 226, 370, 394, 473, 560
FaqI GGGAC 1 cut(s) 212
FatI CATG 5 cut(s) 222, 366, 390, 469, 556
FokI GGATG 4 cut(s) 38, 326, 413, 590
FspBI CTAG 4 cut(s) 201, 257, 501, 605
GlaI GCGC 1 cut(s) 410
GsaI CCCAGC 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 3 cut(s) 81, 245, 374
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 5 cut(s) 226, 370, 394, 473, 560
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 2 cut(s) 76, 544
HindII GTYRAC 2 cut(s) 76, 544
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 1 cut(s) 638
HphI GGTGA 2 cut(s) 277, 661
Hpy166II GTNNAC 5 cut(s) 76, 220, 346, 416, 544
Hpy188I TCNGA 2 cut(s) 42, 105
Hpy188III TCNNGA 3 cut(s) 440, 527, 605
Hpy8I GTNNAC 5 cut(s) 76, 220, 346, 416, 544
HpyCH4III ACNGT 2 cut(s) 541, 613
HpyCH4IV ACGT 3 cut(s) 18, 216, 649
HpyCH4V TGCA 5 cut(s) 51, 94, 131, 416, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 417
HpyF3I CTNAG 3 cut(s) 56, 231, 726
HpySE526I ACGT 3 cut(s) 18, 216, 649
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 5 cut(s) 226, 370, 394, 473, 560
HspAI GCGC 1 cut(s) 409
Kzo9I GATC 8 cut(s) 100, 162, 197, 457, 510, 580, 662, 666
LweI GCATC 2 cut(s) 60, 140
MaeI CTAG 4 cut(s) 201, 257, 501, 605
MaeII ACGT 3 cut(s) 18, 216, 649
MaeIII GTNAC 2 cut(s) 283, 493
MalI GATC 8 cut(s) 102, 164, 199, 459, 512, 582, 664, 668
MboI GATC 8 cut(s) 100, 162, 197, 457, 510, 580, 662, 666
MboII GAAGA 4 cut(s) 20, 56, 169, 628
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 418
MlsI TGGCCA 1 cut(s) 245
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 1 cut(s) 647
MnlI CCTC 8 cut(s) 65, 92, 153, 278, 364, 466, 653, 694
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 53
MscI TGGCCA 1 cut(s) 245
MseI TTAA 3 cut(s) 138, 378, 485
MslI CAYNNNNRTG 3 cut(s) 257, 279, 576
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 1 cut(s) 711
MwoI GCNNNNNNNGC 2 cut(s) 57, 417
NdeII GATC 8 cut(s) 100, 162, 197, 457, 510, 580, 662, 666
NlaIII CATG 5 cut(s) 226, 370, 394, 473, 560
NlaIV GGNNCC 2 cut(s) 228, 354
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 1 cut(s) 560
OliI CACNNNNGTG 1 cut(s) 257
PaeI GCATGC 1 cut(s) 560
PctI GAATGC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 224
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 709
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 2 cut(s) 228, 354
PspPI GGNCC 2 cut(s) 226, 373
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 3 cut(s) 257, 279, 576
SaqAI TTAA 3 cut(s) 138, 378, 485
Sau3AI GATC 8 cut(s) 100, 162, 197, 457, 510, 580, 662, 666
Sau96I GGNCC 2 cut(s) 226, 373
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 1 cut(s) 711
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 2 cut(s) 60, 140
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 3 cut(s) 257, 279, 576
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SphI GCATGC 1 cut(s) 560
SsiI CCGC 2 cut(s) 60, 635
SspMI CTAG 4 cut(s) 201, 257, 501, 605
StyD4I CCNGG 1 cut(s) 709
TaaI ACNGT 2 cut(s) 541, 613
TaiI ACGT 3 cut(s) 21, 219, 652
TaqI TCGA 2 cut(s) 528, 665
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 3 cut(s) 138, 378, 485
Tru9I TTAA 3 cut(s) 138, 378, 485
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 5 cut(s) 415, 538, 560, 609, 638
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 544
Tth111I GACNNNGTC 1 cut(s) 224
VneI GTGCAC 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 226
XbaI TCTAGA 1 cut(s) 604
XceI RCATGY 1 cut(s) 560
XspI CTAG 4 cut(s) 201, 257, 501, 605
ZraI GACGTC 1 cut(s) 19
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.