Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Forward (+)

79272288 .. 79274435

Gene Structure 2148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCCATCAGCATAGTAGACCACGAATTGCCATACGACACCCACAATCTCTACGATGTAACATTTTACAATGATCAAATCCACACCCTAGTCACTCACAGCGCACCCATGGTGGAATCCTGGCTCTCTGAAATCATGCCCATAATCAATGAAAACCCAATTGTAGGCCTGGACGTGGAGTGGCGTCCTAATTTTAACAGCAACAGCGACCACCCAATTGCGACCTTGCAGCTTTGTGTGGACCATCGTTGCCTCATCTTCCAACTCATCCACGCCCAGAACATCCCACAATCGCTCTTTGATTTTCTTGCTAATGGCAGTTACAAATTTGTGGGTGCTGGGATCCAGAATGATACAGAGAAGCTCCTTCTGGACTATGACTTGAAGGTGACCAATACTGTTAATCTTGGGGCTTTGGCAGCGACTAAATTGGGTAGGAGTGAGTTGAAGAATGCTGGGTTGAAGGGCCTGTCTAAAGAGGTGCTTAGGAAGGAGCTCCAGAAGTCTAGGAAGGTGACAATGAGTAGGTGGGATAATGAGTGGCTCACTTGTAATCAGGTTCAGTATGCTTGTATTGATGCTTTTATTTCCTCTGAGATTGGGAGGCAGTTAACTGCCATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

208

Amino Acids

23.52

Weight (kDa)

5.43

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	43 - 205	3.2e-15	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	337, 350
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	164, 175
AgsI	TTSAA	3 cut(s)	385, 448, 463
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	119, 168
AluBI	AGCT	3 cut(s)	232, 364, 496
AluI	AGCT	3 cut(s)	232, 364, 496
Alw21I	GWGCWC	1 cut(s)	498
AlwI	GGATC	2 cut(s)	337, 350
AoxI	GGCC	3 cut(s)	3, 166, 466
ApeKI	GCWGC	2 cut(s)	229, 419
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	241, 466
AsuHPI	GGTGA	2 cut(s)	400, 526
AvaII	GGWCC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	241, 431
BccI	CCATC	2 cut(s)	14, 252
BciT130I	CCWGG	2 cut(s)	121, 170
BclI	TGATCA	1 cut(s)	73
BfaI	CTAG	2 cut(s)	89, 507
BisI	GCNGC	2 cut(s)	230, 420
BlsI	GCNGC	2 cut(s)	231, 421
Bme1390I	CCNGG	2 cut(s)	121, 170
Bme18I	GGWCC	1 cut(s)	241
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	241, 466
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	121, 170
BmsI	GCATC	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	108, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 175
BseBI	CCWGG	2 cut(s)	121, 170
BseDI	CCNNGG	2 cut(s)	108, 618
BseGI	GGATG	2 cut(s)	267, 282
BseLI	CCNNNNNNNGG	2 cut(s)	164, 175
BseMII	CTCAG	1 cut(s)	585
BseXI	GCAGC	2 cut(s)	241, 431
BseYI	CCCAGC	2 cut(s)	338, 455
BshFI	GGCC	3 cut(s)	5, 168, 468
BsiHKAI	GWGCWC	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	164, 175
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	3 cut(s)	5, 168, 468
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	73, 342
Bsp19I	CCATGG	2 cut(s)	108, 618
BspANI	GGCC	3 cut(s)	5, 168, 468
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	337, 350
BssECI	CCNNGG	2 cut(s)	108, 618
BssMI	GATC	2 cut(s)	73, 342
BssNI	GRCGYC	1 cut(s)	184
BssT1I	CCWWGG	2 cut(s)	108, 618
Bst2UI	CCWGG	2 cut(s)	121, 170
Bst4CI	ACNGT	1 cut(s)	400
BstACI	GRCGYC	1 cut(s)	184
BstDEI	CTNAG	2 cut(s)	485, 594
BstDSI	CCRYGG	2 cut(s)	108, 618
BstEII	GGTNACC	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	267, 282
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	76, 345
BstMBI	GATC	2 cut(s)	73, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	2 cut(s)	121, 170
BstPI	GGTNACC	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	119, 168
BstV1I	GCAGC	2 cut(s)	241, 431
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	5, 168, 468
BtgI	CCRYGG	2 cut(s)	108, 618
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	267, 282
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	241, 466
CseI	GACGC	1 cut(s)	173
CviAII	CATG	3 cut(s)	109, 136, 619
DdeI	CTNAG	2 cut(s)	485, 594
DpnI	GATC	2 cut(s)	75, 344
DpnII	GATC	2 cut(s)	73, 342
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	2 cut(s)	108, 618
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	496
Eco91I	GGTNACC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	466
EcoO65I	GGTNACC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	119, 168
EcoT14I	CCWWGG	2 cut(s)	108, 618
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	2 cut(s)	108, 618
FaeI	CATG	3 cut(s)	112, 139, 622
FaiI	YATR	8 cut(s)	14, 34, 110, 137, 143, 378, 567, 620
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FatI	CATG	3 cut(s)	108, 135, 618
FbaI	TGATCA	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	230, 420
FokI	GGATG	2 cut(s)	254, 269
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	2 cut(s)	230, 420
FspBI	CTAG	2 cut(s)	89, 507
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	2 cut(s)	230, 420
GsaI	CCCAGC	2 cut(s)	342, 459
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	3 cut(s)	5, 168, 468
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	112, 139, 622
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	1 cut(s)	116
HpaI	GTTAAC	1 cut(s)	612
HphI	GGTGA	2 cut(s)	400, 526
Hpy166II	GTNNAC	3 cut(s)	19, 241, 612
Hpy188I	TCNGA	2 cut(s)	130, 595
Hpy188III	TCNNGA	3 cut(s)	346, 371, 499
Hpy8I	GTNNAC	3 cut(s)	19, 241, 612
HpyAV	CCTTC	5 cut(s)	377, 379, 457, 484, 505
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	2 cut(s)	485, 594
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	112, 139, 622
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	612
Kzo9I	GATC	2 cut(s)	73, 342
LmnI	GCTCC	3 cut(s)	369, 493, 501
Lsp1109I	GCAGC	2 cut(s)	241, 431
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	2 cut(s)	89, 507
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	5 cut(s)	58, 91, 320, 388, 514
MalI	GATC	2 cut(s)	75, 344
MboI	GATC	2 cut(s)	73, 342
MboII	GAAGA	2 cut(s)	250, 460
MfeI	CAATTG	2 cut(s)	159, 216
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	498
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	26, 159, 190, 216, 326, 428
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	4 cut(s)	263, 472, 597, 601
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	195, 402, 611
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	121, 170
MunI	CAATTG	2 cut(s)	159, 216
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	121, 170
MwoI	GCNNNNNNNGC	1 cut(s)	419
NcoI	CCATGG	2 cut(s)	108, 618
NdeII	GATC	2 cut(s)	73, 342
NlaIII	CATG	3 cut(s)	112, 139, 622
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	3 cut(s)	91, 388, 514
PceI	AGGCCT	1 cut(s)	168
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	231, 421
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	119, 168
PspEI	GGTNACC	1 cut(s)	388
PspFI	CCCAGC	2 cut(s)	338, 455
PspGI	CCWGG	2 cut(s)	119, 168
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	241, 466
PsuI	RGATCY	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	195, 402, 611
SatI	GCNGC	2 cut(s)	230, 420
Sau3AI	GATC	2 cut(s)	73, 342
Sau96I	GGNCC	2 cut(s)	241, 466
ScrFI	CCNGG	2 cut(s)	121, 170
SduI	GDGCHC	1 cut(s)	498
SfaNI	GCATC	1 cut(s)	568
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	6 cut(s)	26, 159, 190, 216, 326, 428
SseBI	AGGCCT	1 cut(s)	168
SspMI	CTAG	2 cut(s)	89, 507
SstI	GAGCTC	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	119, 168
StyI	CCWWGG	2 cut(s)	108, 618
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	177
TasI	AATT	6 cut(s)	26, 159, 190, 216, 326, 428
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	195, 402, 611
Tru9I	TTAA	3 cut(s)	195, 402, 611
TseFI	GTSAC	3 cut(s)	91, 388, 514
TseI	GCWGC	2 cut(s)	229, 419
Tsp45I	GTSAC	3 cut(s)	91, 388, 514
TspDTI	ATGAA	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	89, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.