RchiOBHm_Chr4g0395081

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002586
Physical Location & Seq
Reverse (-)
10867618 .. 10868900
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
ATGTTGAGCTGCACAACATTAGAGAGTTCCAAGTGGTGCCCTGGAAAATATGTTACTTCGACTCAGTGCAAAGTGGACTCAGACAGGGCTATTGAGGAGTCCATTGTGTATCTAAGAACTAGCAGTACTTTGAAGAATGATGGTAGAGGTGCGTGGATTTTTGACATTGATGATACACTGCTCTCTATTGTGCCTTACTACAAGGGACATCATTTCGGGGGTGAGAAGTTGAACCTGAGTGCTTTGGAGGAGTGGATGAGCCATGGCAAGGCACCTGCTCTGGATCACTCACTCAAACTGTTCAATGAGATCAAAGCCAGAGGGCTGCTGATCATTCTGGTTTCTTCAAGGAGGGAGCATCTTAGATCAGCCACAATATACAACCTTCTCCATGTTGGCTCTCATGGATGGACAAGTCTCATTTTAAGGGGTCCTGAGGATGAAGTGAAGGGGGTGCAAGATTTCAAAGCTGATGTGAGGAAACAATTGATGGTTGGTGGATACAGAGTTTGGGGCATATTGGGAGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

177

Amino Acids

19.89

Weight (kDa)

7.76

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 16 - 177 7.9e-43 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 283
AccB1I GGYRCC 2 cut(s) 36, 271
AclWI GGATC 1 cut(s) 291
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 5 cut(s) 133, 232, 304, 348, 466
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 2 cut(s) 9, 470
AluI AGCT 2 cut(s) 9, 470
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 9, 325
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 233
AvaII GGWCC 1 cut(s) 431
AxyI CCTNAGG 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 2 cut(s) 36, 271
BbvI GCAGC 1 cut(s) 312
BccI CCATC 3 cut(s) 134, 402, 484
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 1 cut(s) 494
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 283
BfuI GTATCC 1 cut(s) 494
BisI GCNGC 2 cut(s) 10, 326
BlsI GCNGC 2 cut(s) 11, 327
BmcAI AGTACT 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 3 cut(s) 38, 273, 432
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 40, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse21I CCTNAGG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 40, 262
BseGI GGATG 3 cut(s) 261, 413, 445
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 4 cut(s) 77, 93, 227, 426
BseRI GAGGAG 2 cut(s) 110, 263
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 1 cut(s) 312
BshNI GGYRCC 2 cut(s) 36, 271
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 5 cut(s) 283, 309, 330, 365, 526
Bsp19I CCATGG 1 cut(s) 262
BspCNI CTCAG 4 cut(s) 76, 92, 228, 427
BspLI GGNNCC 3 cut(s) 38, 273, 432
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 1 cut(s) 291
BspT107I GGYRCC 2 cut(s) 36, 271
BssECI CCNNGG 2 cut(s) 40, 262
BssMI GATC 5 cut(s) 283, 309, 330, 365, 526
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 300
BstDEI CTNAG 6 cut(s) 63, 79, 113, 236, 362, 435
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 3 cut(s) 261, 413, 445
BstKTI GATC 5 cut(s) 286, 312, 333, 368, 529
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 5 cut(s) 283, 309, 330, 365, 526
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 312
Bsu36I CCTNAGG 1 cut(s) 435
BsuI GTATCC 1 cut(s) 494
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 3 cut(s) 261, 413, 445
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 2 cut(s) 71, 176
BveI ACCTGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 126
CviAII CATG 3 cut(s) 263, 392, 404
CviJI RGCY 8 cut(s) 9, 89, 261, 317, 325, 371, 399, 470
CviKI_1 RGCY 8 cut(s) 9, 89, 261, 317, 325, 371, 399, 470
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 6 cut(s) 63, 79, 113, 236, 362, 435
DpnI GATC 5 cut(s) 285, 311, 332, 367, 528
DpnII GATC 5 cut(s) 283, 309, 330, 365, 526
Eco130I CCWWGG 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 431
Eco81I CCTNAGG 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 3 cut(s) 266, 395, 407
FaiI YATR 6 cut(s) 51, 264, 379, 393, 405, 518
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 262, 391, 403
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 2 cut(s) 10, 326
FokI GGATG 3 cut(s) 268, 420, 452
Fsp4HI GCNGC 2 cut(s) 10, 326
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 10, 326
Hin1II CATG 3 cut(s) 266, 395, 407
HinfI GANTC 3 cut(s) 61, 77, 98
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 2 cut(s) 281, 434
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 395, 442
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 12, 69, 457
HpyF3I CTNAG 6 cut(s) 63, 79, 113, 236, 362, 435
Hsp92II CATG 3 cut(s) 266, 395, 407
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 5 cut(s) 283, 309, 330, 365, 526
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 9 cut(s) 27, 54, 70, 248, 266, 288, 323, 331, 447
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 52
MalI GATC 5 cut(s) 285, 311, 332, 367, 528
MboI GATC 5 cut(s) 283, 309, 330, 365, 526
MboII GAAGA 2 cut(s) 145, 336
MfeI CAATTG 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 1 cut(s) 485
MlyI GAGTC 3 cut(s) 55, 71, 107
MnlI CCTC 7 cut(s) 88, 140, 241, 314, 345, 430, 471
MseI TTAA 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 42
MunI CAATTG 1 cut(s) 485
MvaI CCWGG 1 cut(s) 42
NcoI CCATGG 1 cut(s) 262
NdeII GATC 5 cut(s) 283, 309, 330, 365, 526
NlaIII CATG 3 cut(s) 266, 395, 407
NlaIV GGNNCC 3 cut(s) 38, 273, 432
PaqCI CACCTGC 1 cut(s) 283
PkrI GCNGC 2 cut(s) 11, 327
PleI GAGTC 3 cut(s) 55, 71, 106
PpsI GAGTC 3 cut(s) 55, 71, 106
PpuMI RGGWCCY 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 3 cut(s) 38, 273, 432
PspPI GGNCC 1 cut(s) 431
PspPPI RGGWCCY 1 cut(s) 431
PsrI GAACNNNNNNTAC 2 cut(s) 109, 141
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 2 cut(s) 10, 326
Sau3AI GATC 5 cut(s) 283, 309, 330, 365, 526
Sau96I GGNCC 1 cut(s) 431
ScaI AGTACT 1 cut(s) 127
SchI GAGTC 3 cut(s) 55, 71, 107
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 11, 151, 237, 277, 387, 472
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 1 cut(s) 431
Sse9I AATT 1 cut(s) 485
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 485
TatI WGTACW 1 cut(s) 125
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 2 cut(s) 71, 183
TseI GCWGC 2 cut(s) 9, 325
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 2 cut(s) 71, 183
VpaK11BI GGWCC 1 cut(s) 431
XspI CTAG 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.