RchiOBHm_Chr2g0110581

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001262
Physical Location & Seq
Reverse (-)
22144694 .. 22146217
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGGCTGCGACCAAGACTAGGAGGAGTAGCTTCTCTCGCAGTTTTTCGGGTGCAAGCTCACCTCAAATCCCAGGACTCAAGCATGGACCCAATGGGACAATGTTTGTGTCATCTGGGATTCCAGACCTTGACAAAATATTAGGTGGCAATGTTATTAATAAGAACTTTAGAAGTGACAGCAACATTTCTTGTGTTGGTCGTATTGCCATTCAATCATTCTGTGCTCCACAGTGTGGATATTCCAGCCTGGAATGGGACATGCTTTCCTTCCTTAGATCTCTAAAAAGTATGCTACGATCTTCAAATGCAGTTGTTGTTGTGACATTTCCGCCTAGTCTTCTTTCATCATCCTCCTCTATAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGTTAAAGCAATTCCCGATGAGGACAAGGAATTGGCAACGCTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTTAATGTGCAGAAAGTAGCGCAGATTAACACACAGGTAGTGCAAAAGTTTGCTTCACCCAAATCAAACACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

180

Amino Acids

19.46

Weight (kDa)

9.47

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 20 - 49 4.7e-06 PAXNEB protein
PAXNEB PF05625 52 - 170 3.9e-28 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 233, 454
AciI CCGC 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 233
AfiI CCNNNNNNNGG 4 cut(s) 18, 233, 253, 454
AgsI TTSAA 2 cut(s) 212, 303
AjnI CCWGG 3 cut(s) 70, 246, 447
AluBI AGCT 2 cut(s) 30, 57
AluI AGCT 2 cut(s) 30, 57
Alw21I GWGCWC 1 cut(s) 226
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 5, 367
AseI ATTAAT 1 cut(s) 156
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 51, 513
AvaII GGWCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 357
BciT130I CCWGG 3 cut(s) 72, 248, 449
BfaI CTAG 2 cut(s) 18, 333
BglII AGATCT 1 cut(s) 275
BisI GCNGC 2 cut(s) 6, 368
BlsI GCNGC 2 cut(s) 7, 369
Bme1390I CCNGG 3 cut(s) 72, 248, 449
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 3 cut(s) 72, 248, 449
BpiI GAAGAC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 233, 253, 454
Bse1I ACTGG 1 cut(s) 445
Bse3DI GCAATG 1 cut(s) 154
BseBI CCWGG 3 cut(s) 72, 248, 449
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 4 cut(s) 18, 233, 253, 454
BseMI GCAATG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 2 cut(s) 37, 343
BseXI GCAGC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 494
BshFI GGCC 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 226
BslFI GGGAC 2 cut(s) 109, 269
BslI CCNNNNNNNGG 4 cut(s) 18, 233, 253, 454
BsmFI GGGAC 2 cut(s) 109, 269
BsnI GGCC 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 275, 296
BspACI CCGC 1 cut(s) 329
BspANI GGCC 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 154
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 2 cut(s) 275, 296
Bst2UI CCWGG 3 cut(s) 72, 248, 449
Bst4CI ACNGT 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 272
BstEII GGTNACC 1 cut(s) 443
BstF5I GGATG 1 cut(s) 347
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 2 cut(s) 278, 299
BstMBI GATC 2 cut(s) 275, 296
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 3 cut(s) 72, 248, 449
BstNSI RCATGY 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 443
BstSCI CCNGG 3 cut(s) 70, 246, 447
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 1 cut(s) 462
BtsCI GGATG 1 cut(s) 347
BtsIMutI CAGTG 2 cut(s) 236, 534
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 86
CviAII CATG 4 cut(s) 83, 259, 373, 454
CviJI RGCY 5 cut(s) 5, 30, 57, 246, 462
CviKI_1 RGCY 5 cut(s) 5, 30, 57, 246, 462
DdeI CTNAG 1 cut(s) 272
DpnI GATC 2 cut(s) 277, 298
DpnII GATC 2 cut(s) 275, 296
DraIII CACNNNGTG 1 cut(s) 233
EciI GGCGGA 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 443
EcoRII CCWGG 3 cut(s) 70, 246, 447
FaeI CATG 4 cut(s) 86, 262, 376, 457
FaiI YATR 6 cut(s) 84, 260, 290, 359, 374, 455
FaqI GGGAC 2 cut(s) 109, 269
FatI CATG 4 cut(s) 82, 258, 372, 453
Fnu4HI GCNGC 2 cut(s) 6, 368
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 6, 368
FspBI CTAG 2 cut(s) 18, 333
GlaI GCGC 1 cut(s) 486
GluI GCNGC 2 cut(s) 6, 368
HaeIII GGCC 1 cut(s) 462
HhaI GCGC 1 cut(s) 487
Hin1II CATG 4 cut(s) 86, 262, 376, 457
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HinfI GANTC 2 cut(s) 75, 118
HphI GGTGA 2 cut(s) 51, 513
Hpy188III TCNNGA 2 cut(s) 122, 407
HpyAV CCTTC 2 cut(s) 277, 473
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 53, 308, 475, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 4 cut(s) 86, 262, 376, 457
HspAI GCGC 1 cut(s) 485
Kzo9I GATC 2 cut(s) 275, 296
LmnI GCTCC 2 cut(s) 229, 438
Lsp1109I GCAGC 1 cut(s) 379
MaeI CTAG 2 cut(s) 18, 333
MaeIII GTNAC 3 cut(s) 173, 319, 443
MalI GATC 2 cut(s) 277, 298
MboI GATC 2 cut(s) 275, 296
MboII GAAGA 2 cut(s) 291, 329
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 2 cut(s) 402, 422
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 5 cut(s) 15, 72, 361, 364, 406
MseI TTAA 4 cut(s) 156, 396, 468, 492
MspR9I CCNGG 3 cut(s) 72, 248, 449
MvaI CCWGG 3 cut(s) 72, 248, 449
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 2 cut(s) 275, 296
NlaIII CATG 4 cut(s) 86, 262, 376, 457
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 173, 319
NspI RCATGY 1 cut(s) 262
PfeI GAWTC 1 cut(s) 118
PflMI CCANNNNNTGG 2 cut(s) 233, 454
PkrI GCNGC 2 cut(s) 7, 369
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 156
Psp6I CCWGG 3 cut(s) 70, 246, 447
PspEI GGTNACC 1 cut(s) 443
PspGI CCWGG 3 cut(s) 70, 246, 447
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 275
SaqAI TTAA 4 cut(s) 156, 396, 468, 492
SatI GCNGC 2 cut(s) 6, 368
Sau3AI GATC 2 cut(s) 275, 296
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 3 cut(s) 72, 248, 449
SduI GDGCHC 1 cut(s) 226
SetI ASST 7 cut(s) 32, 59, 64, 129, 145, 386, 504
SinI GGWCC 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 402, 422
SsiI CCGC 1 cut(s) 329
SspI AATATT 1 cut(s) 138
SspMI CTAG 2 cut(s) 18, 333
StyD4I CCNGG 3 cut(s) 70, 246, 447
TaaI ACNGT 1 cut(s) 231
TasI AATT 2 cut(s) 402, 422
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 4 cut(s) 156, 396, 468, 492
Tru9I TTAA 4 cut(s) 156, 396, 468, 492
TscAI CASTG 2 cut(s) 236, 541
TseFI GTSAC 2 cut(s) 173, 319
TseI GCWGC 2 cut(s) 5, 367
Tsp45I GTSAC 2 cut(s) 173, 319
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 2 cut(s) 236, 541
Van91I CCANNNNNTGG 2 cut(s) 233, 454
VpaK11BI GGWCC 1 cut(s) 86
VspI ATTAAT 1 cut(s) 156
XceI RCATGY 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 2 cut(s) 18, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.