RchiOBHm_Chr2g0110751

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001970
Physical Location & Seq
Reverse (-)
22317723 .. 22318286
564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGATGAGTTTGTTGTTATTCAAAAATTACCTGGTTCTGACTGATGAAGCTGAGGAAGATGGGGCAAACATTTATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTCTGCCTGCTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGGTCTTGTTGGTGTGAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATCCGAGTATGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

83

Amino Acids

9.17

Weight (kDa)

4.69

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 33 - 78 5.7e-08 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 149, 220
AgsI TTSAA 2 cut(s) 22, 112
AjnI CCWGG 2 cut(s) 30, 178
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 53, 241
BciT130I CCWGG 2 cut(s) 32, 180
BciVI GTATCC 1 cut(s) 217
BfuI GTATCC 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 32, 180
BmrFI CCNGG 2 cut(s) 32, 180
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 220
BseBI CCWGG 2 cut(s) 32, 180
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 149, 220
BseMII CTCAG 1 cut(s) 42
BslI CCNNNNNNNGG 2 cut(s) 149, 220
Bsp143I GATC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 248
BssMI GATC 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 32, 180
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstNI CCWGG 2 cut(s) 32, 180
BstSCI CCNGG 2 cut(s) 30, 178
BsuI GTATCC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 144
CciI TCATGA 1 cut(s) 248
CsiI ACCWGGT 1 cut(s) 30
CviAII CATG 1 cut(s) 249
CviJI RGCY 3 cut(s) 50, 154, 178
CviKI_1 RGCY 3 cut(s) 50, 154, 178
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 30, 178
FaeI CATG 1 cut(s) 252
FaiI YATR 2 cut(s) 243, 250
FatI CATG 1 cut(s) 248
FokI GGATG 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 201
Hin1II CATG 1 cut(s) 252
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 2 cut(s) 80, 245
Hpy166II GTNNAC 2 cut(s) 160, 199
Hpy188I TCNGA 3 cut(s) 39, 129, 238
Hpy188III TCNNGA 2 cut(s) 77, 249
Hpy8I GTNNAC 2 cut(s) 160, 199
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 252
Kzo9I GATC 1 cut(s) 216
LpnPI CCDG 7 cut(s) 17, 44, 156, 165, 177, 192, 227
MabI ACCWGGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 1 cut(s) 68
MluCI AATT 2 cut(s) 25, 170
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 2 cut(s) 46, 176
MseI TTAA 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 32, 180
MvaI CCWGG 2 cut(s) 32, 180
NdeII GATC 1 cut(s) 216
NlaIII CATG 1 cut(s) 252
PagI TCATGA 1 cut(s) 248
PfeI GAWTC 1 cut(s) 245
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 30, 178
PspGI CCWGG 2 cut(s) 30, 178
SaqAI TTAA 1 cut(s) 173
Sau3AI GATC 1 cut(s) 216
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 32, 180
SetI ASST 4 cut(s) 33, 52, 187, 216
SexAI ACCWGGT 1 cut(s) 30
Sse9I AATT 2 cut(s) 25, 170
StyD4I CCNGG 2 cut(s) 30, 178
TasI AATT 2 cut(s) 25, 170
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 60, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.