Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Forward (+)

60232904 .. 60235371

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGGCACGAGCCGGAATTACAGAAGTTCACTTCCTTCCTTTCAATCCAACTGATAAGGGGACAGCACTTACATACCTAGACAAAGCTGGTAAAATGCACAGAGTGAGCAAAGGTGCACCAGAGCAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACACACAGTAATTGAAAAATTTGCAGAACGTGGTCTTCGATCCCTTGCTGTTGCACGGCAGTACTTTTTTTTGACTACTCTATTTGCTTTACTTTCCCAAGGCGATCAACTAGCAATTGCTAAAGAGACAGGGAGACGACTTGGGATGGGATCAAACATGTATCCATCATCTTCATTGCTTGGTGAAAATAAGAATGGGTTAGATGCAAGTCTACAAATTGATGAACTCATTGAGAATGCTGATGGTTTTGCTGGTATCTTTCCAGGTAATGTTGGTTATGAACTTGCGTTACAGTTTGCTAACGGATGGTTTGCAAATCCCCAATCTGAGCACGACTCTTATCATTTCATTTTCGGCACAATGGTATGCCTCCTCTTGGAAAGCAAATGCAAGGGTTTGGCCGTTGTTATTACTGATTGGAACACTAGGCGATCCAAGGTCGGGATGGACCATGTGAGGATTCATCCCAAGTTTCTGCATTCCAATGCAACCAGTCATAAGTGGGCTCTTGGAGATGGAAATGGTTTTAAAACAAGTACCATGAGGCTTGGGGCAGACGTGATTGTGTTCACTCGTTGTTGTGGAAAAGATGGAAAAAGGTTGGTAGTGGTTATTTTCTTCAGCCTATCAACAAAGAAAAATAAGAGAGGGAAAAAGTGTCAAATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

306

Amino Acids

33.68

Weight (kDa)

9.38

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AclWI	GGATC	3 cut(s)	282, 406, 675
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	853
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	311, 787
AfiI	CCNNNNNNNGG	2 cut(s)	625, 690
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	18, 121, 239, 263
AjiI	CACGTC	1 cut(s)	808
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	2 cut(s)	14, 164
AluI	AGCT	2 cut(s)	14, 164
Alw21I	GWGCWC	2 cut(s)	196, 582
Alw26I	GTCTC	2 cut(s)	368, 376
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	282, 406, 675
AoxI	GGCC	1 cut(s)	648
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	5, 47
ApoI	RAATTY	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	697
AsuHPI	GGTGA	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	697
BaeGI	GKGCMC	2 cut(s)	196, 250
BanII	GRGCYC	1 cut(s)	757
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	196, 582
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	7 cut(s)	388, 421, 485, 549, 688, 758, 833
BceAI	ACGGC	2 cut(s)	320, 635
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	368, 376
BfaI	CTAG	3 cut(s)	155, 359, 675
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	2 cut(s)	6, 48
BlsI	GCNGC	2 cut(s)	7, 49
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	697
BmgBI	CACGTC	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	697
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	3 cut(s)	25, 34, 442
BpiI	GAAGAC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
BsaJI	CCNNGG	2 cut(s)	346, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	625, 690
Bse1I	ACTGG	1 cut(s)	741
Bse3DI	GCAATG	2 cut(s)	66, 422
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	346, 684
BseGI	GGATG	4 cut(s)	399, 560, 699, 712
BseLI	CCNNNNNNNGG	2 cut(s)	625, 690
BseMI	GCAATG	2 cut(s)	66, 422
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	741
BseRI	GAGGAG	1 cut(s)	611
BseSI	GKGCMC	2 cut(s)	196, 250
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	650
BsiHKAI	GWGCWC	2 cut(s)	196, 582
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	625, 690
BsmAI	GTCTC	2 cut(s)	368, 376
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	2 cut(s)	490, 727
BsnI	GGCC	1 cut(s)	650
Bsp1286I	GDGCHC	4 cut(s)	196, 250, 582, 757
Bsp143I	GATC	4 cut(s)	287, 352, 398, 680
BspANI	GGCC	1 cut(s)	650
BspCNI	CTCAG	1 cut(s)	568
BspPI	GGATC	3 cut(s)	282, 406, 675
BsrDI	GCAATG	2 cut(s)	66, 422
BsrI	ACTGG	1 cut(s)	741
BssECI	CCNNGG	2 cut(s)	346, 684
BssMI	GATC	4 cut(s)	287, 352, 398, 680
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	346, 684
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	256, 543
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	75, 576
BstF5I	GGATG	4 cut(s)	399, 560, 699, 712
BstKTI	GATC	4 cut(s)	290, 355, 401, 683
BstMAI	GTCTC	2 cut(s)	368, 376
BstMBI	GATC	4 cut(s)	287, 352, 398, 680
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 44, 56, 65
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	511
BstSLI	GKGCMC	2 cut(s)	196, 250
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	650
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	4 cut(s)	399, 560, 699, 712
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	310, 786
CviAII	CATG	4 cut(s)	219, 406, 701, 790
CviJI	RGCY	9 cut(s)	5, 14, 68, 89, 164, 650, 755, 796, 873
CviKI_1	RGCY	9 cut(s)	5, 14, 68, 89, 164, 650, 755, 796, 873
CviQI	GTAC	2 cut(s)	310, 786
DdeI	CTNAG	2 cut(s)	75, 576
DpnI	GATC	4 cut(s)	289, 354, 400, 682
DpnII	GATC	4 cut(s)	287, 352, 398, 680
DraI	TTTAAA	1 cut(s)	778
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	648
Eco130I	CCWWGG	2 cut(s)	346, 684
Eco24I	GRGCYC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	346, 684
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	2 cut(s)	346, 684
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	4 cut(s)	222, 409, 704, 793
FaiI	YATR	8 cut(s)	151, 220, 407, 528, 616, 702, 747, 791
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	4 cut(s)	218, 405, 700, 789
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	6, 48
FokI	GGATG	4 cut(s)	406, 567, 699, 706
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	2 cut(s)	6, 48
FspBI	CTAG	3 cut(s)	155, 359, 675
GluI	GCNGC	2 cut(s)	6, 48
HaeIII	GGCC	1 cut(s)	650
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	4 cut(s)	222, 409, 704, 793
HinfI	GANTC	3 cut(s)	71, 584, 709
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	4 cut(s)	106, 194, 461, 819
Hpy188I	TCNGA	2 cut(s)	232, 577
Hpy188III	TCNNGA	2 cut(s)	32, 691
Hpy8I	GTNNAC	4 cut(s)	106, 194, 461, 819
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	256, 543
HpyCH4IV	ACGT	2 cut(s)	277, 807
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 44, 56, 65
HpyF3I	CTNAG	2 cut(s)	75, 576
HpySE526I	ACGT	2 cut(s)	277, 807
Hsp92II	CATG	4 cut(s)	222, 409, 704, 793
Kzo9I	GATC	4 cut(s)	287, 352, 398, 680
LpnPI	CCDG	9 cut(s)	50, 103, 150, 210, 363, 486, 498, 525, 754
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	3 cut(s)	25, 34, 442
MaeI	CTAG	3 cut(s)	155, 359, 675
MaeII	ACGT	2 cut(s)	277, 807
MaeIII	GTNAC	1 cut(s)	537
MalI	GATC	4 cut(s)	289, 354, 400, 682
MboI	GATC	4 cut(s)	287, 352, 398, 680
MboII	GAAGA	3 cut(s)	275, 411, 859
MfeI	CAATTG	2 cut(s)	51, 363
MhlI	GDGCHC	4 cut(s)	196, 250, 582, 757
MluCI	AATT	8 cut(s)	51, 93, 211, 258, 266, 363, 465, 912
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	7 cut(s)	73, 237, 629, 632, 699, 786, 890
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	2 cut(s)	51, 363
Mva1269I	GAATGC	2 cut(s)	490, 727
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	4 cut(s)	11, 44, 56, 65
NdeII	GATC	4 cut(s)	287, 352, 398, 680
NlaIII	CATG	4 cut(s)	222, 409, 704, 793
NspI	RCATGY	1 cut(s)	409
PciI	ACATGT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	2 cut(s)	490, 727
PfeI	GAWTC	2 cut(s)	71, 709
PkrI	GCNGC	2 cut(s)	7, 49
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PscI	ACATGT	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	697
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
RsaI	GTAC	2 cut(s)	311, 787
RsaNI	GTAC	2 cut(s)	310, 786
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	2 cut(s)	6, 48
Sau3AI	GATC	4 cut(s)	287, 352, 398, 680
Sau96I	GGNCC	1 cut(s)	697
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	4 cut(s)	196, 250, 582, 757
SfaNI	GCATC	3 cut(s)	25, 34, 442
SinI	GGWCC	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	732
Sse9I	AATT	8 cut(s)	51, 93, 211, 258, 266, 363, 465, 912
SspMI	CTAG	3 cut(s)	155, 359, 675
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	2 cut(s)	346, 684
TaaI	ACNGT	2 cut(s)	256, 543
TaiI	ACGT	2 cut(s)	280, 810
TaqI	TCGA	1 cut(s)	286
TasI	AATT	8 cut(s)	51, 93, 211, 258, 266, 363, 465, 912
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	71, 709
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TseI	GCWGC	2 cut(s)	5, 47
TspDTI	ATGAA	5 cut(s)	411, 486, 543, 586, 701
TspGWI	ACGGA	1 cut(s)	567
VneI	GTGCAC	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	460
XspI	CTAG	3 cut(s)	155, 359, 675
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.