Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Reverse (-)

60476974 .. 60493624

Gene Structure 16651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAATCCATGCCGTTGATTGCTGAAGTAATCGGTCGTAACCGACCAAGTAAGGCGATTGCTGCATCTGTTGTGACTTGGGGTGGTAAGGGTAAGAGGAAGCTGAGAAAGGTAAGCATCATTATTGGCAATGAATGTCTTAGTAGCACCTCTCCGTTGAGGAACAGGAATGCGCTAGCCTCTCGCTCTTCATTTGAGAGACCGGAATACTCTTGCTGCAGGTCCTGTGTGGATAGTGATGATTTTGAGTTCGATTTCAAGTCGAACGCTGTTGATCTATTTATTTCAAGTCCGGTTGTTGTTGATCCGTTGCTTTCGATTGCCAAGCCGATATCAGCCCAAACAACACGGCTAAGCCGAGCCGAGTCGAAGGTTAGTGGCCGAGTTTTCAACCCAAATTGTTTTGGGCCGATTCCAATTGCAGCTGGTTCAGTTTCTTTGGCCCAAATTGCCAGCCTTAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.64

Weight (kDa)

9.33

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	259, 288, 391
AluBI	AGCT	2 cut(s)	103, 425
AluI	AGCT	2 cut(s)	103, 425
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	225
AoxI	GGCC	3 cut(s)	379, 407, 441
ApeKI	GCWGC	3 cut(s)	62, 216, 422
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	3 cut(s)	222, 407, 442
AsuNHI	GCTAGC	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	49, 203, 434
BceAI	ACGGC	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	3 cut(s)	63, 217, 423
BlpI	GCTNAGC	1 cut(s)	353
BlsI	GCNGC	3 cut(s)	64, 218, 424
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	3 cut(s)	222, 407, 442
BmsI	GCATC	2 cut(s)	74, 126
BmtI	GCTAGC	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	193
BsaWI	WCCGGW	2 cut(s)	202, 292
Bse3DI	GCAATG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	49, 203, 434
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	381, 409, 443
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	203, 293
BsmAI	GTCTC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	381, 409, 443
Bso31I	GGTCTC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	274, 304
Bsp1720I	GCTNAGC	1 cut(s)	353
BspANI	GGCC	3 cut(s)	381, 409, 443
BspCNI	CTCAG	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	210
BspOI	GCTAGC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	136
BssMI	GATC	2 cut(s)	274, 304
Bst6I	CTCTTC	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	177, 454
BstDEI	CTNAG	4 cut(s)	104, 140, 353, 458
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	277, 307
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	274, 304
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 449
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	49, 203, 434
BsuRI	GGCC	3 cut(s)	381, 409, 443
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	177, 454
CaiI	CAGNNNCTG	1 cut(s)	225
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	222, 407, 442
CviAII	CATG	1 cut(s)	10
DdeI	CTNAG	4 cut(s)	104, 140, 353, 458
DpnI	GATC	2 cut(s)	276, 306
DpnII	GATC	2 cut(s)	274, 304
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRV	GATATC	1 cut(s)	333
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	63, 217, 423
Fsp4HI	GCNGC	3 cut(s)	63, 217, 423
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	63, 217, 423
HaeIII	GGCC	3 cut(s)	381, 409, 443
HapII	CCGG	2 cut(s)	203, 293
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	3 cut(s)	5, 365, 412
HpaII	CCGG	2 cut(s)	203, 293
HpyAV	CCTTC	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	65, 219, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 449
HpyF3I	CTNAG	4 cut(s)	104, 140, 353, 458
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	274, 304
LguI	GCTCTTC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	151, 205, 216, 238, 306, 411
Lsp1109I	GCAGC	3 cut(s)	49, 203, 434
LweI	GCATC	2 cut(s)	74, 126
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	38, 73
MalI	GATC	2 cut(s)	276, 306
MboI	GATC	2 cut(s)	274, 304
MboII	GAAGA	1 cut(s)	180
MfeI	CAATTG	1 cut(s)	417
MluCI	AATT	3 cut(s)	397, 417, 447
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	4 cut(s)	90, 153, 160, 190
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	203, 293
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	62, 449
NdeII	GATC	2 cut(s)	274, 304
NheI	GCTAGC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	13
NmeAIII	GCCGAG	3 cut(s)	383, 388, 407
NmuCI	GTSAC	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	5, 412
PkrI	GCNGC	3 cut(s)	64, 218, 424
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	222
PspPI	GGNCC	3 cut(s)	222, 407, 442
PspPPI	RGGWCCY	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	425
SapI	GCTCTTC	1 cut(s)	193
SatI	GCNGC	3 cut(s)	63, 217, 423
Sau3AI	GATC	2 cut(s)	274, 304
Sau96I	GGNCC	3 cut(s)	222, 407, 442
SchI	GAGTC	1 cut(s)	374
SetI	ASST	6 cut(s)	105, 114, 152, 224, 375, 427
SfaNI	GCATC	2 cut(s)	74, 126
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	3 cut(s)	397, 417, 447
SspMI	CTAG	1 cut(s)	176
TaqI	TCGA	4 cut(s)	252, 263, 317, 368
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	3 cut(s)	397, 417, 447
TfiI	GAWTC	2 cut(s)	5, 412
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	62, 216, 422
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	147, 180
TspGWI	ACGGA	2 cut(s)	144, 297
VpaK11BI	GGWCC	1 cut(s)	222
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.