Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Forward (+)

3500769 .. 3530503

Gene Structure 29735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG020900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGTATTGATTTTTCTTTGATTTCTAGGTTTTTGAACATATATATGCATTACTTGGCTAGCACATATGATTGGGTTGCCGGGGATGAGACTTTTGCTTTAAAGGCAGAGTCTTTGAGTGCAAATGTTTGCATTACAGCAGTCACTATTTTCTCAGACAAATCGACGGCAATCAACTTAGGTGCAATCACAAAGAGAATGACAGCCATTGAAGAAATGGCTGGGATGGATGTGCTCTGCAGTGATAAAACAGGAACTTTAACTCTCAACAAGTTAACAGTGGACAAGAATCTGATAGAGGTGTGTGCTAAAGATGTAGAAAAAGACTCGGTTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGTTGATTCTAAGGAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACACACAATTAGGTCGCATTTGAGGATGGTAGGTTTGCAAATTCAGCATGAGAAGCAAATGATGCAAATGCATGCTAAGCATCCAGGCGGACTGCGTGACAATGGGAAGCCGGATTCCTATTTTCTGAGTTCCTCTAGACTATGGAAACAAAATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

207

Amino Acids

23.08

Weight (kDa)

6.59

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	504
AgsI	TTSAA	4 cut(s)	37, 212, 357, 455
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	344, 386
ApoI	RAATTY	1 cut(s)	504
AsuC2I	CCSGG	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	331, 398
BccI	CCATC	3 cut(s)	220, 334, 484
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	3 cut(s)	27, 60, 600
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	345, 387
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	2 cut(s)	346, 388
Bme1390I	CCNGG	2 cut(s)	82, 549
BmrFI	CCNGG	2 cut(s)	82, 549
BmsI	GCATC	4 cut(s)	364, 373, 516, 553
BmtI	GCTAGC	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	540
BpuMI	CCSGG	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	5 cut(s)	91, 231, 235, 495, 544
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	168, 581
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	331, 398
BseYI	CCCAGC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	81, 575
BsmAI	GTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	237, 466
Bsp1720I	GCTNAGC	1 cut(s)	540
BspACI	CCGC	1 cut(s)	552
BspCNI	CTCAG	2 cut(s)	167, 582
BspMAI	CTGCAG	1 cut(s)	242
BspOI	GCTAGC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	280
BstAPI	GCANNNNNTGC	2 cut(s)	395, 526
BstC8I	GCNNGC	2 cut(s)	61, 537
BstDEI	CTNAG	5 cut(s)	154, 178, 414, 540, 590
BstF5I	GGATG	5 cut(s)	91, 231, 235, 495, 544
BstMAI	GTCTC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 350, 383, 395, 508, 517, 526, 541
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	2 cut(s)	80, 547
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	331, 398
BtsCI	GGATG	5 cut(s)	91, 231, 235, 495, 544
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	247, 285
Cac8I	GCNNGC	2 cut(s)	61, 537
CviAII	CATG	3 cut(s)	435, 512, 536
CviJI	RGCY	6 cut(s)	59, 206, 221, 344, 353, 574
CviKI_1	RGCY	6 cut(s)	59, 206, 221, 344, 353, 574
DdeI	CTNAG	5 cut(s)	154, 178, 414, 540, 590
DraI	TTTAAA	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	547
EcoT22I	ATGCAT	2 cut(s)	51, 537
FaeI	CATG	3 cut(s)	438, 515, 539
FatI	CATG	3 cut(s)	434, 511, 535
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	345, 387
FokI	GGATG	5 cut(s)	98, 238, 242, 502, 531
Fsp4HI	GCNGC	2 cut(s)	345, 387
FspBI	CTAG	3 cut(s)	27, 60, 600
GluI	GCNGC	2 cut(s)	345, 387
GsaI	CCCAGC	1 cut(s)	225
HapII	CCGG	2 cut(s)	81, 575
Hin1II	CATG	3 cut(s)	438, 515, 539
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	5 cut(s)	110, 289, 326, 410, 578
HpaI	GTTAAC	1 cut(s)	276
HpaII	CCGG	2 cut(s)	81, 575
Hpy166II	GTNNAC	2 cut(s)	276, 283
Hpy188I	TCNGA	4 cut(s)	157, 294, 448, 591
Hpy188III	TCNNGA	2 cut(s)	371, 600
Hpy8I	GTNNAC	2 cut(s)	276, 283
Hpy99I	CGWCG	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 350, 383, 395, 508, 517, 526, 541
HpyF3I	CTNAG	5 cut(s)	154, 178, 414, 540, 590
Hsp92II	CATG	3 cut(s)	438, 515, 539
KspAI	GTTAAC	1 cut(s)	276
LpnPI	CCDG	7 cut(s)	94, 207, 237, 389, 534, 561, 588
Lsp1109I	GCAGC	2 cut(s)	331, 398
LweI	GCATC	4 cut(s)	364, 373, 516, 553
MaeI	CTAG	3 cut(s)	27, 60, 600
MaeIII	GTNAC	2 cut(s)	142, 560
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	2 cut(s)	237, 466
MluCI	AATT	4 cut(s)	390, 427, 471, 504
MlyI	GAGTC	2 cut(s)	119, 320
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	4 cut(s)	292, 453, 480, 607
Mph1103I	ATGCAT	2 cut(s)	51, 537
MseI	TTAA	3 cut(s)	101, 260, 275
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	2 cut(s)	81, 575
MspR9I	CCNGG	2 cut(s)	82, 549
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	8 cut(s)	104, 350, 383, 395, 508, 517, 526, 541
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	67
NheI	GCTAGC	1 cut(s)	59
NlaIII	CATG	3 cut(s)	438, 515, 539
NmuCI	GTSAC	2 cut(s)	142, 560
NsiI	ATGCAT	2 cut(s)	51, 537
NspI	RCATGY	1 cut(s)	539
PaeI	GCATGC	1 cut(s)	539
PfeI	GAWTC	3 cut(s)	289, 410, 578
PkrI	GCNGC	2 cut(s)	346, 388
PleI	GAGTC	2 cut(s)	118, 320
PpsI	GAGTC	2 cut(s)	118, 320
Psp6I	CCWGG	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	547
PstI	CTGCAG	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	101, 260, 275
SatI	GCNGC	2 cut(s)	345, 387
SchI	GAGTC	2 cut(s)	119, 320
ScrFI	CCNGG	2 cut(s)	82, 549
SduI	GDGCHC	2 cut(s)	237, 466
SetI	ASST	7 cut(s)	32, 184, 303, 355, 362, 479, 499
SfaNI	GCATC	4 cut(s)	364, 373, 516, 553
SfcI	CTRYAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	539
Sse9I	AATT	4 cut(s)	390, 427, 471, 504
SsiI	CCGC	1 cut(s)	552
SspMI	CTAG	3 cut(s)	27, 60, 600
StyD4I	CCNGG	2 cut(s)	80, 547
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	164
TasI	AATT	4 cut(s)	390, 427, 471, 504
TfiI	GAWTC	3 cut(s)	289, 410, 578
Tru1I	TTAA	3 cut(s)	101, 260, 275
Tru9I	TTAA	3 cut(s)	101, 260, 275
TscAI	CASTG	2 cut(s)	247, 285
TseFI	GTSAC	2 cut(s)	142, 560
TseI	GCWGC	2 cut(s)	344, 386
Tsp45I	GTSAC	2 cut(s)	142, 560
TspRI	CASTG	2 cut(s)	247, 285
XapI	RAATTY	1 cut(s)	504
XbaI	TCTAGA	1 cut(s)	599
XceI	RCATGY	1 cut(s)	539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XspI	CTAG	3 cut(s)	27, 60, 600
Zsp2I	ATGCAT	2 cut(s)	51, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.