Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Reverse (-)

16074400 .. 16077286

Gene Structure 2887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0172400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCGTTGGGGTATAATAATTTTGCAAAGAACGGGAAATCAGATTCTGGGTCATCCGATTCTCTGGATAGCTTATTTGGCGACAAAGATGCAAGCAGTGCTCTGGAAGTTTCTAGTATCATTCAACCAAAAGAGGCTGATTACCCATTTTGTTGCCTATCAGTTGAAGATGCTCCAATCAATGACTTGGTAGATTTTATCATTGCTTCTCAGATATCTGTGAAACTTGAGAATGAGCACAACTGCCATATCTATAGGGTGGTGTTGATGTCTGCAACTGCTGATATTGGAAGGTCACTTATTGTCAATTTGGCAACCGCTAACTGCTACAAAGTTGAGCATTTGAAAAGACCAGAAAACTGGGCATTAGTTGAGAAGGCCAAGTACATCTATGTTGCTGGTTTTTTCTCAACTGTATATCCAGAATCCATTCAGCTTGTTACTGAACATGTTTTCAGCATGAACCTTTCTACCCCATTTATCTGTGAATTTTTCAAGGATGTCCAGGAGAAAGCTAGCTGTGCCCTGCTCAACGAGCCTAAAACAATGGTTGATTGTTGCTCATTTGACATTATTTTTGGCAGAAAATGCATCTATCTTGCTCAAGAGAGTTACTACAAATTAATGGGCCTGAAGATGATGTACAGGCTTGTGATTCCTTACAGGCTTACACAACAGTGCCATGCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.94

Weight (kDa)

5.51

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	653
AfaI	GTAC	2 cut(s)	386, 644
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	125, 167, 346, 496
AjnI	CCWGG	1 cut(s)	504
AleI	CACNNNNGTG	1 cut(s)	676
AluBI	AGCT	4 cut(s)	72, 436, 515, 519
AluI	AGCT	4 cut(s)	72, 436, 515, 519
Alw21I	GWGCWC	2 cut(s)	103, 240
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	2 cut(s)	378, 628
ApoI	RAATTY	1 cut(s)	488
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
AseI	ATTAAT	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	628
AsuNHI	GCTAGC	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	526
BarI	GAAGNNNNNNTAC	4 cut(s)	368, 400, 626, 658
Bbv12I	GWGCWC	2 cut(s)	103, 240
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	506
BfaI	CTAG	2 cut(s)	114, 516
BfmI	CTRYAG	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	3 cut(s)	79, 160, 600
BmtI	GCTAGC	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	370
BpuEI	CTTGAG	2 cut(s)	248, 588
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	506
BseGI	GGATG	2 cut(s)	53, 505
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	526
BshFI	GGCC	2 cut(s)	380, 630
BsiHKAI	GWGCWC	2 cut(s)	103, 240
BsnI	GGCC	2 cut(s)	380, 630
Bsp1286I	GDGCHC	3 cut(s)	103, 240, 526
Bsp1407I	TGTACA	1 cut(s)	642
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	380, 630
BspCNI	CTCAG	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	2 cut(s)	415, 678
BstAPI	GCANNNNNTGC	2 cut(s)	98, 588
BstAUI	TGTACA	1 cut(s)	642
BstC8I	GCNNGC	2 cut(s)	94, 517
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	53, 505
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 98, 521, 535, 588
BstNI	CCWGG	1 cut(s)	506
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	526
BstXI	CCANNNNNNTGG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	380, 630
BtsCI	GGATG	2 cut(s)	53, 505
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	3 cut(s)	103, 683, 688
Cac8I	GCNNGC	2 cut(s)	94, 517
CaiI	CAGNNNCTG	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	628
Csp6I	GTAC	2 cut(s)	385, 643
CviAII	CATG	3 cut(s)	449, 460, 683
CviQI	GTAC	2 cut(s)	385, 643
DdeI	CTNAG	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	504
EcoRV	GATATC	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	593
FaeI	CATG	3 cut(s)	452, 463, 686
FaiI	YATR	8 cut(s)	15, 249, 255, 393, 418, 450, 461, 684
FatI	CATG	3 cut(s)	448, 459, 682
FokI	GGATG	2 cut(s)	40, 512
FspBI	CTAG	2 cut(s)	114, 516
HaeIII	GGCC	2 cut(s)	380, 630
Hin1II	CATG	3 cut(s)	452, 463, 686
HinfI	GANTC	4 cut(s)	44, 59, 425, 655
Hpy188I	TCNGA	3 cut(s)	43, 58, 213
Hpy188III	TCNNGA	4 cut(s)	65, 104, 422, 605
HpyAV	CCTTC	2 cut(s)	285, 370
HpyCH4III	ACNGT	2 cut(s)	415, 678
HpyCH4V	TGCA	4 cut(s)	26, 92, 275, 591
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 98, 521, 535, 588
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	452, 463, 686
LmnI	GCTCC	1 cut(s)	178
LweI	GCATC	3 cut(s)	79, 160, 600
MaeI	CTAG	2 cut(s)	114, 516
MaeIII	GTNAC	3 cut(s)	294, 439, 611
MboII	GAAGA	2 cut(s)	179, 646
MhlI	GDGCHC	3 cut(s)	103, 240, 526
MluCI	AATT	4 cut(s)	19, 307, 488, 620
MnlI	CCTC	1 cut(s)	127
Mph1103I	ATGCAT	1 cut(s)	593
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	1 cut(s)	623
MslI	CAYNNNNRTG	1 cut(s)	676
MspR9I	CCNGG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	5 cut(s)	78, 98, 521, 535, 588
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	3 cut(s)	452, 463, 686
NmuCI	GTSAC	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	593
NspI	RCATGY	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	676
PciI	ACATGT	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	4 cut(s)	44, 59, 425, 655
PfoI	TCCNGGA	1 cut(s)	504
PscI	ACATGT	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	628
PstNI	CAGNNNCTG	1 cut(s)	47
RsaI	GTAC	2 cut(s)	386, 644
RsaNI	GTAC	2 cut(s)	385, 643
RseI	CAYNNNNRTG	1 cut(s)	676
SaqAI	TTAA	1 cut(s)	623
Sau96I	GGNCC	1 cut(s)	628
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	3 cut(s)	103, 240, 526
SetI	ASST	6 cut(s)	74, 296, 438, 468, 517, 521
SfaNI	GCATC	3 cut(s)	79, 160, 600
SfcI	CTRYAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	676
SmlI	CTYRAG	2 cut(s)	227, 603
SmoI	CTYRAG	2 cut(s)	227, 603
Sse9I	AATT	4 cut(s)	19, 307, 488, 620
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	2 cut(s)	114, 516
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	415, 678
TasI	AATT	4 cut(s)	19, 307, 488, 620
TatI	WGTACW	2 cut(s)	384, 642
TfiI	GAWTC	4 cut(s)	44, 59, 425, 655
Tru1I	TTAA	1 cut(s)	623
Tru9I	TTAA	1 cut(s)	623
TscAI	CASTG	2 cut(s)	103, 683
TseFI	GTSAC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	2 cut(s)	103, 683
VspI	ATTAAT	1 cut(s)	623
XapI	RAATTY	1 cut(s)	488
XceI	RCATGY	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	2 cut(s)	114, 516
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.