RLG00000030416

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005554
Physical Location & Seq
Reverse (-)
61150104 .. 61150864
761 bp
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UTR
Exon/CDS
Intron
RLM00000030416

Sequence Viewer

Length: 372 bp
ATGAATAAAGTGTTTGCTAAAGATGTTGAAAAAGACTCGGTTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGGCACGAGCCGGAATTACAGAAGTTCACTTCCTTCCTTTCAATCCAACTGATAAGAGGACAGCACTTACATACCTAGACAAAGCTGGTAAAATGCACAGAGTGAGCACAGGTGCACCAGAGCAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACGCACAGTAATTGACAAATTTGCAGAACGTGGTCTTCGATCCCTTGCTGTTGCACGGCAGGTAACCAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

124

Amino Acids

13.64

Weight (kDa)

9.69

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 1 cut(s) 314
AdeI CACNNNGTG 1 cut(s) 229
AgsI TTSAA 4 cut(s) 29, 66, 169, 287
AluBI AGCT 2 cut(s) 62, 212
AluI AGCT 2 cut(s) 62, 212
Alw21I GWGCWC 2 cut(s) 236, 244
Alw44I GTGCAC 1 cut(s) 240
AlwI GGATC 1 cut(s) 330
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 53, 95
ApoI RAATTY 1 cut(s) 314
BaeGI GKGCMC 2 cut(s) 244, 298
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 2 cut(s) 236, 244
BbvI GCAGC 2 cut(s) 40, 107
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 368
BfaI CTAG 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 2 cut(s) 54, 96
BlsI GCNGC 2 cut(s) 55, 97
BmsI GCATC 2 cut(s) 73, 82
BpiI GAAGAC 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 114
BseSI GKGCMC 2 cut(s) 244, 298
BseXI GCAGC 2 cut(s) 40, 107
BsiHKAI GWGCWC 2 cut(s) 236, 244
BsiSI CCGG 1 cut(s) 138
Bsp1286I GDGCHC 3 cut(s) 236, 244, 298
Bsp143I GATC 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 114
BssMI GATC 1 cut(s) 335
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 304
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 114, 298
BstDEI CTNAG 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 358
BstKTI GATC 1 cut(s) 338
BstMBI GATC 1 cut(s) 335
BstMWI GCNNNNNNNGC 4 cut(s) 59, 92, 104, 113
BstPI GGTNACC 1 cut(s) 358
BstSLI GKGCMC 2 cut(s) 244, 298
BstV1I GCAGC 2 cut(s) 40, 107
BstV2I GAAGAC 1 cut(s) 323
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 114, 298
CviAII CATG 1 cut(s) 267
CviJI RGCY 5 cut(s) 53, 62, 116, 137, 212
CviKI_1 RGCY 5 cut(s) 53, 62, 116, 137, 212
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
DraIII CACNNNGTG 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 358
FaeI CATG 1 cut(s) 270
FaiI YATR 2 cut(s) 199, 268
FatI CATG 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 54, 96
Fsp4HI GCNGC 2 cut(s) 54, 96
FspBI CTAG 1 cut(s) 203
GluI GCNGC 2 cut(s) 54, 96
HapII CCGG 1 cut(s) 138
Hin1II CATG 1 cut(s) 270
HinfI GANTC 2 cut(s) 35, 119
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 154, 242
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 154, 242
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 7 cut(s) 56, 95, 107, 223, 242, 320, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 92, 104, 113
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 1 cut(s) 270
Kzo9I GATC 1 cut(s) 335
LpnPI CCDG 6 cut(s) 98, 151, 198, 222, 258, 341
Lsp1109I GCAGC 2 cut(s) 40, 107
LweI GCATC 2 cut(s) 73, 82
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 358
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 1 cut(s) 323
MfeI CAATTG 1 cut(s) 99
MhlI GDGCHC 3 cut(s) 236, 244, 298
MluCI AATT 5 cut(s) 99, 141, 259, 306, 314
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 51, 197
MnlI CCTC 3 cut(s) 121, 177, 285
MseI TTAA 1 cut(s) 370
MspI CCGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 59, 92, 104, 113
NdeII GATC 1 cut(s) 335
NlaIII CATG 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 55, 97
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PspEI GGTNACC 1 cut(s) 358
SaqAI TTAA 1 cut(s) 370
SatI GCNGC 2 cut(s) 54, 96
Sau3AI GATC 1 cut(s) 335
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 3 cut(s) 236, 244, 298
SetI ASST 7 cut(s) 64, 71, 204, 214, 241, 328, 360
SfaNI GCATC 2 cut(s) 73, 82
Sse9I AATT 5 cut(s) 99, 141, 259, 306, 314
SspMI CTAG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 334
TasI AATT 5 cut(s) 99, 141, 259, 306, 314
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TseI GCWGC 2 cut(s) 53, 95
TspDTI ATGAA 1 cut(s) 17
VneI GTGCAC 1 cut(s) 240
XapI RAATTY 1 cut(s) 314
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.