Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Forward (+)

76890143 .. 76892967

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTTTCTTGGTGTAATCACAAAGAGAATGACAGCCATTGAAGAAATGGCTGGGATGGATGTGCTCTGCAGTGATAAAACAGGAACTTTAACTCTCAACAAGTTAACAGTGGACAAGAATCTGATAGAGGTGTTTGCTAAAGATGTTGAAAAAGACTCGGTTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATGGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGGCACGAGCCGGAATTACAGAAGTTCACTTCCTTCCTTTCAATCCAACTGATAAGAGGACAGCACTTACATACCTAGACAAAGCTGGTAAAATGCACAGAGTGAGCAAAGGTGCACCAGAGAAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACACACAGTAATTGACAAATTTGCAGAACGTGGTCTTCGATCCCTTGCTGTTGCACGGCAGATTCTTACTGATTCCACTCCAGCCGCATTTTTTTTTACTACTCTATTTGCTTTACTTTCCCAAGGCGATCAACTAGCAATTGCTAAAGAGACAGGGAGATGCCTTGGGATGGGATCAAACATGTATCCATCATCTTCATTGCTTGGTGAAAATAAGAATGGATTAGATGCAAGTCTACAAATTGATGAACTCATTGAGAATGATGATGGTTTTGCTGGTATCTTTCCAGGTAATGTTGGTTATGAACTTGCGTTACAGTTTGCTAACCATAAATATGAGATTGTTCAGCGATTACAAATTAAGAAGCACATAGTTGGAATGACCGGTGATGGAGTTAATGAAGCACCTGCCTTGAAGAAAGCAGACATAGGAATTGTTGTGGCAGATGCCACAGATGCTGCTCGTAGTGCGTTTGATATAGTACTAACACAGCCTGGATTGAGTGTTATTATTAGTGCTGTTCTGACAAGCCGTGCAATCTTTCAAAGAATGAAGAACTACACAGTAAGGGGATTCTCCCTTCTCATTTTTTTAGGAATTGGACCAGCCTGGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

344

Amino Acids

37.36

Weight (kDa)

6.55

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	832
Acc36I	ACCTGC	1 cut(s)	832
AccI	GTMKAC	1 cut(s)	652
AciI	CCGC	1 cut(s)	501
AclWI	GGATC	2 cut(s)	450, 598
AcsI	RAATTY	1 cut(s)	434
AdeI	CACNNNGTG	1 cut(s)	349
AfaI	GTAC	1 cut(s)	900
AfiI	CCNNNNNNNGG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	597
AgeI	ACCGGT	1 cut(s)	800
AgsI	TTSAA	7 cut(s)	41, 149, 186, 289, 407, 832, 962
AjnI	CCWGG	3 cut(s)	703, 910, 1025
AluBI	AGCT	2 cut(s)	182, 332
AluI	AGCT	2 cut(s)	182, 332
Alw21I	GWGCWC	2 cut(s)	66, 364
Alw26I	GTCTC	1 cut(s)	560
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	450, 598
AlwNI	CAGNNNCTG	1 cut(s)	875
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	173, 215, 875
ApoI	RAATTY	1 cut(s)	434
AsiGI	ACCGGT	1 cut(s)	800
AspS9I	GGNCC	1 cut(s)	1019
AsuHPI	GGTGA	2 cut(s)	635, 815
AvaII	GGWCC	1 cut(s)	1019
BaeGI	GKGCMC	2 cut(s)	364, 418
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	2 cut(s)	66, 364
BbvI	GCAGC	3 cut(s)	160, 227, 862
BccI	CCATC	6 cut(s)	49, 163, 580, 613, 677, 800
BceAI	ACGGC	2 cut(s)	488, 933
BciT130I	CCWGG	3 cut(s)	705, 912, 1027
BciVI	GTATCC	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	2 cut(s)	323, 551
BfmI	CTRYAG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	832
BfuI	GTATCC	1 cut(s)	612
BisI	GCNGC	4 cut(s)	174, 216, 501, 876
BlsI	GCNGC	4 cut(s)	175, 217, 502, 877
BmcAI	AGTACT	1 cut(s)	900
Bme1390I	CCNGG	3 cut(s)	705, 912, 1027
Bme18I	GGWCC	1 cut(s)	1019
BmgT120I	GGNCC	1 cut(s)	1019
BmrFI	CCNGG	3 cut(s)	705, 912, 1027
BmsI	GCATC	6 cut(s)	193, 202, 566, 634, 853, 862
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	207, 538, 580
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse118I	RCCGGY	1 cut(s)	800
Bse3DI	GCAATG	2 cut(s)	234, 614
BseBI	CCWGG	3 cut(s)	705, 912, 1027
BseDI	CCNNGG	3 cut(s)	207, 538, 580
BseGI	GGATG	4 cut(s)	60, 64, 217, 591
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	2 cut(s)	234, 614
BseSI	GKGCMC	2 cut(s)	364, 418
BseXI	GCAGC	3 cut(s)	160, 227, 862
BseYI	CCCAGC	1 cut(s)	50
BshTI	ACCGGT	1 cut(s)	800
BsiHKAI	GWGCWC	2 cut(s)	66, 364
BsiSI	CCGG	2 cut(s)	258, 801
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	3 cut(s)	66, 364, 418
Bsp143I	GATC	3 cut(s)	455, 544, 590
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	501
BspMAI	CTGCAG	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	2 cut(s)	450, 598
BsrDI	GCAATG	2 cut(s)	234, 614
BsrFI	RCCGGY	1 cut(s)	800
BssAI	RCCGGY	1 cut(s)	800
BssECI	CCNNGG	3 cut(s)	207, 538, 580
BssMI	GATC	3 cut(s)	455, 544, 590
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	3 cut(s)	207, 538, 580
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	705, 912, 1027
Bst4CI	ACNGT	4 cut(s)	109, 424, 735, 982
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	4 cut(s)	60, 64, 217, 591
BstKTI	GATC	3 cut(s)	458, 547, 593
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	3 cut(s)	455, 544, 590
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 212, 224, 233, 872, 884
BstNI	CCWGG	3 cut(s)	705, 912, 1027
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	3 cut(s)	703, 910, 1025
BstSFI	CTRYAG	1 cut(s)	67
BstSLI	GKGCMC	2 cut(s)	364, 418
BstV1I	GCAGC	3 cut(s)	160, 227, 862
BstV2I	GAAGAC	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	4 cut(s)	60, 64, 217, 591
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 114
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	875
Cfr10I	RCCGGY	1 cut(s)	800
Cfr13I	GGNCC	1 cut(s)	1019
Csp6I	GTAC	1 cut(s)	899
CspAI	ACCGGT	1 cut(s)	800
CviAII	CATG	3 cut(s)	208, 387, 598
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	457, 546, 592
DpnII	GATC	3 cut(s)	455, 544, 590
DraIII	CACNNNGTG	1 cut(s)	349
Eco130I	CCWWGG	3 cut(s)	207, 538, 580
Eco47I	GGWCC	1 cut(s)	1019
EcoRII	CCWGG	3 cut(s)	703, 910, 1025
EcoT14I	CCWWGG	3 cut(s)	207, 538, 580
ErhI	CCWWGG	3 cut(s)	207, 538, 580
FaeI	CATG	3 cut(s)	211, 390, 601
FatI	CATG	3 cut(s)	207, 386, 597
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	4 cut(s)	174, 216, 501, 876
FokI	GGATG	4 cut(s)	67, 71, 224, 598
Fsp4HI	GCNGC	4 cut(s)	174, 216, 501, 876
FspBI	CTAG	2 cut(s)	323, 551
GluI	GCNGC	4 cut(s)	174, 216, 501, 876
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	480
HapII	CCGG	2 cut(s)	258, 801
Hin1II	CATG	3 cut(s)	211, 390, 601
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	6 cut(s)	118, 155, 239, 478, 488, 990
HpaI	GTTAAC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	258, 801
HphI	GGTGA	2 cut(s)	635, 815
Hpy166II	GTNNAC	5 cut(s)	105, 112, 274, 362, 653
Hpy188I	TCNGA	3 cut(s)	123, 400, 942
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	5 cut(s)	105, 112, 274, 362, 653
HpyAV	CCTTC	2 cut(s)	290, 1007
HpyCH4III	ACNGT	4 cut(s)	109, 424, 735, 982
HpyCH4IV	ACGT	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 212, 224, 233, 872, 884
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	3 cut(s)	211, 390, 601
KspAI	GTTAAC	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	455, 544, 590
Lsp1109I	GCAGC	3 cut(s)	160, 227, 862
LweI	GCATC	6 cut(s)	193, 202, 566, 634, 853, 862
MaeI	CTAG	2 cut(s)	323, 551
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	729
MalI	GATC	3 cut(s)	457, 546, 592
MboI	GATC	3 cut(s)	455, 544, 590
MboII	GAAGA	6 cut(s)	53, 382, 443, 603, 844, 982
MfeI	CAATTG	2 cut(s)	219, 555
MhlI	GDGCHC	3 cut(s)	66, 364, 418
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	3 cut(s)	171, 317, 772
MnlI	CCTC	4 cut(s)	121, 241, 297, 405
MseI	TTAA	4 cut(s)	89, 104, 777, 813
MslI	CAYNNNNRTG	1 cut(s)	750
MspI	CCGG	2 cut(s)	258, 801
MspR9I	CCNGG	3 cut(s)	705, 912, 1027
MunI	CAATTG	2 cut(s)	219, 555
MvaI	CCWGG	3 cut(s)	705, 912, 1027
MwoI	GCNNNNNNNGC	6 cut(s)	179, 212, 224, 233, 872, 884
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	3 cut(s)	455, 544, 590
NlaIII	CATG	3 cut(s)	211, 390, 601
NspI	RCATGY	1 cut(s)	601
PaqCI	CACCTGC	1 cut(s)	832
PciI	ACATGT	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	451
PfeI	GAWTC	5 cut(s)	118, 239, 478, 488, 990
PinAI	ACCGGT	1 cut(s)	800
PkrI	GCNGC	4 cut(s)	175, 217, 502, 877
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PscI	ACATGT	1 cut(s)	597
Psp6I	CCWGG	3 cut(s)	703, 910, 1025
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	3 cut(s)	703, 910, 1025
PspPI	GGNCC	1 cut(s)	1019
PsrI	GAACNNNNNNTAC	2 cut(s)	714, 746
PstI	CTGCAG	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	875
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	4 cut(s)	89, 104, 777, 813
SatI	GCNGC	4 cut(s)	174, 216, 501, 876
Sau3AI	GATC	3 cut(s)	455, 544, 590
Sau96I	GGNCC	1 cut(s)	1019
ScaI	AGTACT	1 cut(s)	900
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	705, 912, 1027
SduI	GDGCHC	3 cut(s)	66, 364, 418
SetI	ASST	9 cut(s)	132, 184, 191, 324, 334, 361, 448, 709, 826
SfaNI	GCATC	6 cut(s)	193, 202, 566, 634, 853, 862
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	1019
SmiMI	CAYNNNNRTG	1 cut(s)	750
SsiI	CCGC	1 cut(s)	501
SspMI	CTAG	2 cut(s)	323, 551
StyD4I	CCNGG	3 cut(s)	703, 910, 1025
StyI	CCWWGG	3 cut(s)	207, 538, 580
TaaI	ACNGT	4 cut(s)	109, 424, 735, 982
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	454
TatI	WGTACW	1 cut(s)	898
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	5 cut(s)	118, 239, 478, 488, 990
Tru1I	TTAA	4 cut(s)	89, 104, 777, 813
Tru9I	TTAA	4 cut(s)	89, 104, 777, 813
TscAI	CASTG	2 cut(s)	76, 114
TseI	GCWGC	3 cut(s)	173, 215, 875
TspDTI	ATGAA	5 cut(s)	603, 678, 735, 831, 983
TspRI	CASTG	2 cut(s)	76, 114
VneI	GTGCAC	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	1019
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	652
XspI	CTAG	2 cut(s)	323, 551
ZrmI	AGTACT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.