Rmu_sc0038346.1_g000002

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038346.1
OG0005554
Physical Location & Seq
Forward (+)
594 .. 1223
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038346.1_g000002.1.cds

Sequence Viewer

Length: 630 bp
atgcaatttggttacgatcaggacatcccaggttttgttgctccattgattcagaatactaatatgacctggaagcagtacttgaaagaacttgagtatgtaatattgtatataccatcgaggctttctgaggcggatgctagcacaagatacttaaagtggtggaaggaatccatgacaggcctcaaacacagaagtatgtcaccagaaaagaaagcaagggaagctgtcaatgagatatatgatgtcagcattccttgtatccgttctccaaagaaggcagaagtactcgtgcaggtttctgcaggaaggaatgtatacgaaggtaatgattcccttgtgcctcccggattccctccaaaaaggtataggctggaagttggagatcctatggatgatgatgacctaactatatcagaggctttgaaaattaggaagaagcataaaactgttgaaactagaaaaggtagcgacggtgagaagttatcagctgatcatgatcaaatcttggcatcttcaattgcagatgaatattctgttaatactatgacatcagaaatatttgagaatgacattacattgggtaaagttgtgacttggggtgataagggtaagaggaagctgagaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

210

Amino Acids

23.96

Weight (kDa)

7.74

Isoelectric Point (pI)

29.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 318
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 380
AfaI GTAC 2 cut(s) 80, 288
AgsI TTSAA 4 cut(s) 85, 427, 455, 519
AjnI CCWGG 2 cut(s) 28, 68
AluBI AGCT 3 cut(s) 227, 491, 622
AluI AGCT 3 cut(s) 227, 491, 622
AlwI GGATC 1 cut(s) 380
AoxI GGCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 3 cut(s) 195, 488, 614
AsuNHI GCTAGC 1 cut(s) 140
BauI CACGAG 1 cut(s) 290
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 2 cut(s) 30, 70
BciVI GTATCC 1 cut(s) 272
BclI TGATCA 2 cut(s) 493, 499
BcnI CCSGG 1 cut(s) 348
BfaI CTAG 2 cut(s) 141, 459
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 286
BfuI GTATCC 1 cut(s) 272
BmcAI AGTACT 2 cut(s) 80, 288
Bme1390I CCNGG 3 cut(s) 30, 70, 348
BmrFI CCNGG 3 cut(s) 30, 70, 348
BmsI GCATC 2 cut(s) 127, 521
BmtI GCTAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 2 cut(s) 30, 70
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 3 cut(s) 24, 142, 400
BseJI GATNNNNATC 1 cut(s) 498
BseMII CTCAG 2 cut(s) 120, 614
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 348
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 1 cut(s) 183
Bsp143I GATC 4 cut(s) 16, 385, 493, 499
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 121, 615
BspHI TCATGA 1 cut(s) 496
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 4 cut(s) 16, 385, 493, 499
BssNAI GTATAC 1 cut(s) 319
BssSI CACGAG 1 cut(s) 290
Bst1107I GTATAC 1 cut(s) 319
Bst2BI CACGAG 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 30, 70
Bst4CI ACNGT 2 cut(s) 451, 476
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 129, 623
BstF5I GGATG 3 cut(s) 24, 142, 400
BstKTI GATC 4 cut(s) 19, 388, 496, 502
BstMBI GATC 4 cut(s) 16, 385, 493, 499
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 2 cut(s) 30, 70
BstSCI CCNGG 3 cut(s) 28, 68, 346
BstSFI CTRYAG 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BstZ17I GTATAC 1 cut(s) 319
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 3 cut(s) 24, 142, 400
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 142
CciI TCATGA 1 cut(s) 496
Csp6I GTAC 2 cut(s) 79, 287
CviAII CATG 2 cut(s) 175, 497
CviJI RGCY 7 cut(s) 124, 183, 227, 373, 422, 491, 622
CviKI_1 RGCY 7 cut(s) 124, 183, 227, 373, 422, 491, 622
CviQI GTAC 2 cut(s) 79, 287
DdeI CTNAG 2 cut(s) 129, 623
DpnI GATC 4 cut(s) 18, 387, 495, 501
DpnII GATC 4 cut(s) 16, 385, 493, 499
EciI GGCGGA 1 cut(s) 149
Eco147I AGGCCT 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 28, 68
FaeI CATG 2 cut(s) 178, 500
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FatI CATG 2 cut(s) 174, 496
FbaI TGATCA 2 cut(s) 493, 499
FblI GTMKAC 1 cut(s) 318
FokI GGATG 3 cut(s) 11, 149, 407
FspBI CTAG 2 cut(s) 141, 459
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 348
Hin1II CATG 2 cut(s) 178, 500
HinfI GANTC 4 cut(s) 49, 170, 332, 351
HpaII CCGG 1 cut(s) 348
HphI GGTGA 3 cut(s) 195, 488, 614
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 4 cut(s) 54, 130, 418, 556
Hpy188III TCNNGA 2 cut(s) 20, 497
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 4 cut(s) 160, 271, 303, 317
HpyCH4III ACNGT 2 cut(s) 451, 476
HpyCH4V TGCA 4 cut(s) 4, 295, 305, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 129, 623
Hsp92II CATG 2 cut(s) 178, 500
Ksp22I TGATCA 2 cut(s) 493, 499
Kzo9I GATC 4 cut(s) 16, 385, 493, 499
LmnI GCTCC 1 cut(s) 46
LweI GCATC 2 cut(s) 127, 521
MaeI CTAG 2 cut(s) 141, 459
MaeIII GTNAC 3 cut(s) 11, 201, 592
MalI GATC 4 cut(s) 18, 387, 495, 501
MboI GATC 4 cut(s) 16, 385, 493, 499
MboII GAAGA 2 cut(s) 448, 507
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 385
MluCI AATT 3 cut(s) 5, 429, 519
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 7 cut(s) 114, 124, 194, 354, 366, 412, 609
MseI TTAA 2 cut(s) 155, 540
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 3 cut(s) 30, 70, 348
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 2 cut(s) 30, 70
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 348
NdeII GATC 4 cut(s) 16, 385, 493, 499
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 2 cut(s) 178, 500
NmuCI GTSAC 2 cut(s) 201, 592
PagI TCATGA 1 cut(s) 496
PceI AGGCCT 1 cut(s) 183
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 4 cut(s) 49, 170, 332, 351
PfoI TCCNGGA 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 28, 68
PspGI CCWGG 2 cut(s) 28, 68
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 2 cut(s) 80, 288
RsaNI GTAC 2 cut(s) 79, 287
SaqAI TTAA 2 cut(s) 155, 540
Sau3AI GATC 4 cut(s) 16, 385, 493, 499
ScaI AGTACT 2 cut(s) 80, 288
ScrFI CCNGG 3 cut(s) 30, 70, 348
SfaNI GCATC 2 cut(s) 127, 521
SfcI CTRYAG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 3 cut(s) 5, 429, 519
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 1 cut(s) 134
SspI AATATT 3 cut(s) 105, 533, 561
SspMI CTAG 2 cut(s) 141, 459
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 28, 68, 346
TaaI ACNGT 2 cut(s) 451, 476
TaqI TCGA 1 cut(s) 119
TasI AATT 3 cut(s) 5, 429, 519
TatI WGTACW 2 cut(s) 78, 286
TfiI GAWTC 4 cut(s) 49, 170, 332, 351
Tru1I TTAA 2 cut(s) 155, 540
Tru9I TTAA 2 cut(s) 155, 540
TseFI GTSAC 2 cut(s) 201, 592
Tsp45I GTSAC 2 cut(s) 201, 592
TspDTI ATGAA 1 cut(s) 543
TspGWI ACGGA 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 318
XspI CTAG 2 cut(s) 141, 459
ZrmI AGTACT 2 cut(s) 80, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.