Rh5CG297400

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005554
Physical Location & Seq
Forward (+)
32738231 .. 32739623
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG297400.1

Sequence Viewer

Length: 1038 bp
ATGCCATTGCCATTGAGAACTGGAAACTTCCCAAAGTATTTTGTTGAGAAGGAGAAGTGGGTAGTGGTTGGTCCCAGTTTGAATGATGATGAATTGCTGTCATTTTCGATATGCCTGAGGGTGAATGAGTTGGTTGGATTTGGTACTAAACAGCAGTACCTTCCGCACCGAGTGGCTATGCAATTTGGTTACGATCAGGACATCCCAGGTTTTGTTGCTCCATTGATTCACAATACTAATATGACCTGGAAGCAGTACTTGAAAGAACTTGAGTATGTGATATTGTATATACCATCGAGGCTTTCTGAGGCGGATGCTAGCACAAGATACTTAAAGTGGTGGAAGGAATCCATGGCAGGCCTCAAACACAGAAGTATGTCACCACAAAAGAAAGCAAAGGAAGCTGTCAACGAAATTTATGATGTCACCATTCCTTGTATCCATTCTCCAAAGAAGGCAGAAGAAGTGGTGCAGGTTTCTGCAGGAAGGAATGTATACGAAGGTAATGATTCCCTTGTGCCTCCCGGATTCCCTCCCAAAAGGTATAGGCTGGAAGTTGGAGATCCTATGGATGATGATGACCTAACTATATCAGAGGCTTTGAAAATTAGGAAGAAGCATAAGACTGTTGAAACTAGAAAAGGTAGCGACTGTGAGAAGTTATCAGCTGATCATGATCAAATCTTGGCATTCTCAATTGTAGATGAATATTCTGTTAATATTATGACATCAGAAATATTTGAGAATGACATTACATTGGGTAAAGTTGTGACTTGGGGTGGTAAGGGTAAGAGGAAGCTGAGAAAGGTAAGCATCATTATTGGCAATGAATGTCCAAGTAGCACCTCTCCAGTTGGGGAACAGGAATGCGCTAGCCTCAGCTCTTCATTTGAGAGACCGGAATACGCTTGCAGCAGGTCTGTATTTGAGAAACCAGAATATGCCAGCAGCAGTTCATTTGAAAAACGGGTGTCACAACTTAAATCTAAGGTTACAATGCTTGAAAAGATAGTTGAGGTGTTAAAATCTAGGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

345

Amino Acids

39.13

Weight (kDa)

8.06

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 28 - 115 9.8e-21 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 463, 906
AccI GTMKAC 1 cut(s) 495
AciI CCGC 2 cut(s) 164, 311
AclWI GGATC 1 cut(s) 557
AcsI RAATTY 1 cut(s) 414
AdeI CACNNNGTG 1 cut(s) 172
AfaI GTAC 3 cut(s) 145, 158, 257
AgsI TTSAA 6 cut(s) 82, 262, 604, 632, 962, 1004
AjnI CCWGG 2 cut(s) 205, 245
AluBI AGCT 4 cut(s) 404, 668, 799, 882
AluI AGCT 4 cut(s) 404, 668, 799, 882
Alw26I GTCTC 1 cut(s) 889
AlwI GGATC 1 cut(s) 557
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 2 cut(s) 912, 948
ApoI RAATTY 1 cut(s) 414
AspLEI GCGC 1 cut(s) 872
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 3 cut(s) 133, 372, 418
AsuNHI GCTAGC 2 cut(s) 317, 872
AvaII GGWCC 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 116
BaeI ACNNNNGTAYC 2 cut(s) 140, 173
BbvCI CCTCAGC 1 cut(s) 878
BbvI GCAGC 2 cut(s) 924, 960
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 2 cut(s) 207, 247
BciVI GTATCC 1 cut(s) 449
BclI TGATCA 2 cut(s) 670, 676
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 889
BfaI CTAG 4 cut(s) 318, 636, 873, 1029
BfmI CTRYAG 1 cut(s) 480
BfuAI ACCTGC 2 cut(s) 463, 906
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 2 cut(s) 913, 949
BlsI GCNGC 2 cut(s) 914, 950
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 3 cut(s) 207, 247, 525
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 3 cut(s) 207, 247, 525
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 304, 822
BmtI GCTAGC 2 cut(s) 321, 876
BmuI ACTGGG 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 834
Bpu10I CCTNAGC 1 cut(s) 878
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 525
BsaBI GATNNNNATC 1 cut(s) 675
BsaI GGTCTC 1 cut(s) 889
BsaJI CCNNGG 2 cut(s) 205, 351
BsaWI WCCGGW 1 cut(s) 898
Bse1I ACTGG 3 cut(s) 25, 75, 851
Bse21I CCTNAGG 1 cut(s) 116
Bse3DI GCAATG 2 cut(s) 5, 832
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 2 cut(s) 207, 247
BseDI CCNNGG 2 cut(s) 205, 351
BseGI GGATG 3 cut(s) 201, 319, 577
BseJI GATNNNNATC 1 cut(s) 675
BseMI GCAATG 2 cut(s) 5, 832
BseMII CTCAG 4 cut(s) 107, 297, 791, 892
BseNI ACTGG 3 cut(s) 25, 75, 851
BseXI GCAGC 2 cut(s) 924, 960
BsgI GTGCAG 1 cut(s) 491
BshFI GGCC 1 cut(s) 360
BsiSI CCGG 2 cut(s) 525, 899
BslFI GGGAC 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 889
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 2 cut(s) 689, 872
BsnI GGCC 1 cut(s) 360
Bso31I GGTCTC 1 cut(s) 889
Bsp143I GATC 4 cut(s) 193, 562, 670, 676
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 2 cut(s) 164, 311
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 4 cut(s) 108, 298, 792, 891
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 1 cut(s) 73
BspMAI CTGCAG 1 cut(s) 484
BspMI ACCTGC 2 cut(s) 463, 906
BspOI GCTAGC 2 cut(s) 321, 876
BspPI GGATC 1 cut(s) 557
BspQI GCTCTTC 1 cut(s) 889
BspTNI GGTCTC 1 cut(s) 889
BsrDI GCAATG 2 cut(s) 5, 832
BsrI ACTGG 3 cut(s) 25, 75, 851
BssECI CCNNGG 2 cut(s) 205, 351
BssMI GATC 4 cut(s) 193, 562, 670, 676
BssNAI GTATAC 1 cut(s) 496
BssT1I CCWWGG 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 207, 247
Bst4CI ACNGT 2 cut(s) 628, 653
Bst6I CTCTTC 1 cut(s) 889
BstC8I GCNNGC 5 cut(s) 319, 358, 874, 910, 946
BstDEI CTNAG 5 cut(s) 116, 306, 800, 878, 987
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 201, 319, 577
BstHHI GCGC 1 cut(s) 872
BstKTI GATC 4 cut(s) 196, 565, 673, 679
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 4 cut(s) 193, 562, 670, 676
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 2 cut(s) 207, 247
BstSCI CCNGG 3 cut(s) 205, 245, 523
BstSFI CTRYAG 1 cut(s) 480
BstV1I GCAGC 2 cut(s) 924, 960
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 496
Bsu36I CCTNAGG 1 cut(s) 116
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 201, 319, 577
BveI ACCTGC 2 cut(s) 463, 906
Cac8I GCNNGC 5 cut(s) 319, 358, 874, 910, 946
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 872
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 3 cut(s) 144, 157, 256
CviAII CATG 2 cut(s) 352, 674
CviQI GTAC 3 cut(s) 144, 157, 256
DdeI CTNAG 5 cut(s) 116, 306, 800, 878, 987
DpnI GATC 4 cut(s) 195, 564, 672, 678
DpnII GATC 4 cut(s) 193, 562, 670, 676
DraIII CACNNNGTG 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 889
EarI CTCTTC 1 cut(s) 889
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 889
Eco47I GGWCC 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 205, 245
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 355, 677
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 57
FatI CATG 2 cut(s) 351, 673
FbaI TGATCA 2 cut(s) 670, 676
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 913, 949
FokI GGATG 3 cut(s) 188, 326, 584
Fsp4HI GCNGC 2 cut(s) 913, 949
FspBI CTAG 4 cut(s) 318, 636, 873, 1029
GlaI GCGC 1 cut(s) 871
GluI GCNGC 2 cut(s) 913, 949
GsuI CTGGAG 1 cut(s) 834
HaeIII GGCC 1 cut(s) 360
HapII CCGG 2 cut(s) 525, 899
HhaI GCGC 1 cut(s) 872
Hin1II CATG 2 cut(s) 355, 677
Hin6I GCGC 1 cut(s) 870
HinP1I GCGC 1 cut(s) 870
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 4 cut(s) 226, 347, 509, 528
HpaII CCGG 2 cut(s) 525, 899
HphI GGTGA 3 cut(s) 133, 372, 418
Hpy166II GTNNAC 2 cut(s) 409, 496
Hpy188I TCNGA 3 cut(s) 307, 595, 733
Hpy188III TCNNGA 2 cut(s) 197, 674
Hpy8I GTNNAC 2 cut(s) 409, 496
HpyAV CCTTC 6 cut(s) 43, 170, 337, 448, 480, 494
HpyCH4III ACNGT 2 cut(s) 628, 653
HpyCH4V TGCA 4 cut(s) 181, 472, 482, 912
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 5 cut(s) 116, 306, 800, 878, 987
Hsp92II CATG 2 cut(s) 355, 677
HspAI GCGC 1 cut(s) 870
Ksp22I TGATCA 2 cut(s) 670, 676
Kzo9I GATC 4 cut(s) 193, 562, 670, 676
LguI GCTCTTC 1 cut(s) 889
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 2 cut(s) 924, 960
LweI GCATC 2 cut(s) 304, 822
MaeI CTAG 4 cut(s) 318, 636, 873, 1029
MaeIII GTNAC 6 cut(s) 188, 378, 424, 769, 972, 991
MalI GATC 4 cut(s) 195, 564, 672, 678
MboI GATC 4 cut(s) 193, 562, 670, 676
MboII GAAGA 3 cut(s) 473, 625, 876
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 1 cut(s) 562
MluCI AATT 5 cut(s) 92, 182, 414, 606, 696
MmeI TCCRAC 2 cut(s) 115, 538
MseI TTAA 4 cut(s) 332, 717, 981, 1022
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 2 cut(s) 525, 899
MspR9I CCNGG 3 cut(s) 207, 247, 525
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 2 cut(s) 689, 872
MvaI CCWGG 2 cut(s) 207, 247
MwoI GCNNNNNNNGC 1 cut(s) 401
NciI CCSGG 1 cut(s) 525
NcoI CCATGG 1 cut(s) 351
NdeII GATC 4 cut(s) 193, 562, 670, 676
NheI GCTAGC 2 cut(s) 317, 872
NlaIII CATG 2 cut(s) 355, 677
NlaIV GGNNCC 1 cut(s) 73
NmuCI GTSAC 4 cut(s) 378, 424, 769, 972
PagI TCATGA 1 cut(s) 673
PceI AGGCCT 1 cut(s) 360
PciSI GCTCTTC 1 cut(s) 889
PctI GAATGC 2 cut(s) 689, 872
PfeI GAWTC 4 cut(s) 226, 347, 509, 528
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 2 cut(s) 914, 950
Psp6I CCWGG 2 cut(s) 205, 245
PspGI CCWGG 2 cut(s) 205, 245
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 71
PstI CTGCAG 1 cut(s) 484
PsuI RGATCY 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 3 cut(s) 145, 158, 257
RsaNI GTAC 3 cut(s) 144, 157, 256
SapI GCTCTTC 1 cut(s) 889
SaqAI TTAA 4 cut(s) 332, 717, 981, 1022
SatI GCNGC 2 cut(s) 913, 949
Sau3AI GATC 4 cut(s) 193, 562, 670, 676
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 257
ScrFI CCNGG 3 cut(s) 207, 247, 525
SfaNI GCATC 2 cut(s) 304, 822
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 5 cut(s) 92, 182, 414, 606, 696
SseBI AGGCCT 1 cut(s) 360
SsiI CCGC 2 cut(s) 164, 311
SspI AATATT 3 cut(s) 710, 721, 738
SspMI CTAG 4 cut(s) 318, 636, 873, 1029
StuI AGGCCT 1 cut(s) 360
StyD4I CCNGG 3 cut(s) 205, 245, 523
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 628, 653
TaqI TCGA 2 cut(s) 107, 296
TasI AATT 5 cut(s) 92, 182, 414, 606, 696
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 4 cut(s) 226, 347, 509, 528
Tru1I TTAA 4 cut(s) 332, 717, 981, 1022
Tru9I TTAA 4 cut(s) 332, 717, 981, 1022
TseFI GTSAC 4 cut(s) 378, 424, 769, 972
TseI GCWGC 2 cut(s) 912, 948
Tsp45I GTSAC 4 cut(s) 378, 424, 769, 972
TspDTI ATGAA 5 cut(s) 105, 720, 843, 876, 945
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 414
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 4 cut(s) 318, 636, 873, 1029
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.