Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Forward (+)

28373126 .. 28374722

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTGAACCAGTGTTTGCTAAAGATGTTGAAAAAAGACTCGGTTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGGCACGAGCGAATTACGAAGTTCACTTCCTTCCTTTCAATCCAACTGATAAGAGGACAGCACTTACATACCTAGACAAAGCTGGTAAAATGCACAGAGTGAGCAAAGGTGCACCGAGCAGAACGTGGTCTTCGATCCCCTTGCTTGTTGCACGGCGAGGTTACGACGATCTTGAAACTATTAGAAGAGCTCTAGATCTTGGTGTGAGTGTTAAGATGATTACAGGCGATCAACTAGCAATTGCTAAAGAGACAGGGAGACGACTTGGGATGGGATCAAACATGTATCCATCATCTTCATTGCTTGGTGAAAATAAGAATGGATTAGATGCAAGTCTACAAATTGATGAACTCATTGAGAATGCTGATGGTTTTGCTGGTATCTTTCCAGGTAATGTTGGTTATGAACTTGCGTTACGGTTTGCTAACATTAGGTCGCATTTGAGGTGTTGTCAATTGTGTTGTCAATTAAAAGAGTTGGTGTATGAAAAGCAATTGTATAGGCAAGAAATGGATGACTTGATGAAGCAAGATGAGCTAGAAGTTGAAAGAAAGTTGAGAAAGCTTTGGCTGATCTTTGTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

238

Amino Acids

26.89

Weight (kDa)

8.53

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	466
AclWI	GGATC	2 cut(s)	259, 412
AdeI	CACNNNGTG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	6 cut(s)	7, 31, 69, 169, 305, 677
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	5 cut(s)	65, 212, 320, 667, 694
AluI	AGCT	5 cut(s)	65, 212, 320, 667, 694
Alw21I	GWGCWC	2 cut(s)	244, 322
Alw26I	GTCTC	2 cut(s)	374, 382
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	259, 412
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	56, 98
AsuHPI	GGTGA	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	244, 322
BbvI	GCAGC	2 cut(s)	43, 110
BccI	CCATC	4 cut(s)	46, 394, 427, 491
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	1 cut(s)	519
BciVI	GTATCC	1 cut(s)	426
BcoDI	GTCTC	2 cut(s)	374, 382
BfaI	CTAG	4 cut(s)	203, 323, 365, 668
BfuI	GTATCC	1 cut(s)	426
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	2 cut(s)	57, 99
BlsI	GCNGC	2 cut(s)	58, 100
Bme1390I	CCNGG	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	3 cut(s)	76, 85, 448
BpiI	GAAGAC	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	2 cut(s)	117, 428
BseBI	CCWGG	1 cut(s)	519
BseGI	GGATG	2 cut(s)	405, 649
BseMI	GCAATG	2 cut(s)	117, 428
BseNI	ACTGG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	43, 110
BsiHKAI	GWGCWC	2 cut(s)	244, 322
BsmAI	GTCTC	2 cut(s)	374, 382
BsmBI	CGTCTC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	496
Bsp1286I	GDGCHC	2 cut(s)	244, 322
Bsp143I	GATC	6 cut(s)	264, 298, 325, 358, 404, 702
BspPI	GGATC	2 cut(s)	259, 412
BspQI	GCTCTTC	1 cut(s)	310
BsrDI	GCAATG	2 cut(s)	117, 428
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	6 cut(s)	264, 298, 325, 358, 404, 702
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	1 cut(s)	549
Bst6I	CTCTTC	1 cut(s)	310
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	405, 649
BstKTI	GATC	6 cut(s)	267, 301, 328, 361, 407, 705
BstMAI	GTCTC	2 cut(s)	374, 382
BstMBI	GATC	6 cut(s)	264, 298, 325, 358, 404, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 95, 107, 116, 664
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	517
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	43, 110
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	405, 649
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	117
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	8 cut(s)	56, 65, 119, 212, 320, 667, 694, 700
CviKI_1	RGCY	8 cut(s)	56, 65, 119, 212, 320, 667, 694, 700
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	6 cut(s)	266, 300, 327, 360, 406, 704
DpnII	GATC	6 cut(s)	264, 298, 325, 358, 404, 702
DraIII	CACNNNGTG	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	1 cut(s)	415
FaiI	YATR	5 cut(s)	199, 413, 534, 615, 630
FatI	CATG	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	57, 99
FokI	GGATG	2 cut(s)	412, 656
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	2 cut(s)	57, 99
FspBI	CTAG	4 cut(s)	203, 323, 365, 668
GluI	GCNGC	2 cut(s)	57, 99
Hin1II	CATG	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	2 cut(s)	38, 122
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	3 cut(s)	154, 242, 467
Hpy188III	TCNNGA	3 cut(s)	83, 302, 323
Hpy8I	GTNNAC	3 cut(s)	154, 242, 467
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	7 cut(s)	59, 98, 110, 223, 242, 281, 461
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 95, 107, 116, 664
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	264, 298, 325, 358, 404, 702
LguI	GCTCTTC	1 cut(s)	310
LpnPI	CCDG	8 cut(s)	23, 101, 198, 339, 369, 492, 504, 531
Lsp1109I	GCAGC	2 cut(s)	43, 110
LweI	GCATC	3 cut(s)	76, 85, 448
MaeI	CTAG	4 cut(s)	203, 323, 365, 668
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	290, 543
MalI	GATC	6 cut(s)	266, 300, 327, 360, 406, 704
MboI	GATC	6 cut(s)	264, 298, 325, 358, 404, 702
MboII	GAAGA	3 cut(s)	252, 327, 417
MfeI	CAATTG	4 cut(s)	102, 369, 584, 623
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	244, 322
MluCI	AATT	7 cut(s)	102, 142, 369, 471, 584, 596, 623
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	54, 197
MnlI	CCTC	4 cut(s)	124, 177, 281, 567
MseI	TTAA	3 cut(s)	342, 599, 715
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	4 cut(s)	102, 369, 584, 623
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	5 cut(s)	62, 95, 107, 116, 664
NdeII	GATC	6 cut(s)	264, 298, 325, 358, 404, 702
NlaIII	CATG	1 cut(s)	415
NspI	RCATGY	1 cut(s)	415
PciI	ACATGT	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	58, 100
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PscI	ACATGT	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PsrI	GAACNNNNNNTAC	2 cut(s)	528, 560
PsuI	RGATCY	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	310
SaqAI	TTAA	3 cut(s)	342, 599, 715
SatI	GCNGC	2 cut(s)	57, 99
Sau3AI	GATC	6 cut(s)	264, 298, 325, 358, 404, 702
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	2 cut(s)	244, 322
SfaNI	GCATC	3 cut(s)	76, 85, 448
Sse9I	AATT	7 cut(s)	102, 142, 369, 471, 584, 596, 623
SspMI	CTAG	4 cut(s)	203, 323, 365, 668
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	517
TaaI	ACNGT	1 cut(s)	549
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	263
TasI	AATT	7 cut(s)	102, 142, 369, 471, 584, 596, 623
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	3 cut(s)	342, 599, 715
Tru9I	TTAA	3 cut(s)	342, 599, 715
TscAI	CASTG	1 cut(s)	17
TseI	GCWGC	2 cut(s)	56, 98
TspDTI	ATGAA	5 cut(s)	417, 492, 549, 630, 668
TspRI	CASTG	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	240
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	466
XspI	CTAG	4 cut(s)	203, 323, 365, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.