Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8081158.1

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 525

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8081158.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ttcaaccctgttgacaagaggactgctttgacctacattgattctgatgggaattggcatcgatctagcaaaggtgcccctgagcagatattaaccctatgcaactgcaaggaagatttcaagaaaaaggttcatgccgtgattgataaatttgctgaacgtgggcttcgatctcttggggttgcaagacagcaaattcctgagaaaacaaaagagagtccaggtgcaccatggcagtttgttggtttgttgccattatttgatcctcccaggcatgacagtgcagaaactattcgcagagctctcaatcttggtgtgaatgtgaagatgatcaccggtaagttcatttctccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

118

Amino Acids

13.24

Weight (kDa)

9.59

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	149, 195
AgeI	ACCGGT	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	4, 121
AjnI	CCWGG	2 cut(s)	220, 269
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	2 cut(s)	229, 304
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	257
ApaLI	GTGCAC	1 cut(s)	225
ApoI	RAATTY	2 cut(s)	149, 195
AsiGI	ACCGGT	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	325
BaeGI	GKGCMC	2 cut(s)	79, 229
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	304
Bbv12I	GWGCWC	2 cut(s)	229, 304
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	222, 271
BclI	TGATCA	1 cut(s)	330
BfaI	CTAG	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	222, 271
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	222, 271
BmsI	GCATC	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	230, 269
BsaWI	WCCGGW	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	222, 271
BseCI	ATCGAT	1 cut(s)	61
BseDI	CCNNGG	2 cut(s)	230, 269
BseMII	CTCAG	2 cut(s)	72, 192
BseSI	GKGCMC	2 cut(s)	79, 229
BsgI	GTGCAG	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	61
BsiHKAI	GWGCWC	2 cut(s)	229, 304
BsiSI	CCGG	1 cut(s)	336
Bsp1286I	GDGCHC	3 cut(s)	79, 229, 304
Bsp143I	GATC	4 cut(s)	62, 170, 262, 330
Bsp19I	CCATGG	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	73, 193
BspDI	ATCGAT	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	230, 269
BssMI	GATC	4 cut(s)	62, 170, 262, 330
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	2 cut(s)	222, 271
Bst4CI	ACNGT	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	81, 201
BstDSI	CCRYGG	1 cut(s)	230
BstKTI	GATC	4 cut(s)	65, 173, 265, 333
BstMBI	GATC	4 cut(s)	62, 170, 262, 330
BstNI	CCWGG	2 cut(s)	222, 271
BstSCI	CCNGG	2 cut(s)	220, 269
BstSLI	GKGCMC	2 cut(s)	79, 229
Bsu15I	ATCGAT	1 cut(s)	61
BsuTUI	ATCGAT	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	335
ClaI	ATCGAT	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	3 cut(s)	134, 231, 275
CviJI	RGCY	2 cut(s)	166, 302
CviKI_1	RGCY	2 cut(s)	166, 302
DdeI	CTNAG	2 cut(s)	81, 201
DpnI	GATC	4 cut(s)	64, 172, 264, 332
DpnII	GATC	4 cut(s)	62, 170, 262, 330
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	220, 269
EcoT14I	CCWWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	3 cut(s)	137, 234, 278
FaiI	YATR	4 cut(s)	100, 135, 232, 276
FatI	CATG	3 cut(s)	133, 230, 274
FbaI	TGATCA	1 cut(s)	330
FriOI	GRGCYC	1 cut(s)	304
FspBI	CTAG	1 cut(s)	66
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	3 cut(s)	137, 234, 278
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	41, 217
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	13, 227
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	121, 200
Hpy8I	GTNNAC	2 cut(s)	13, 227
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	5 cut(s)	102, 108, 185, 227, 284
HpyF3I	CTNAG	2 cut(s)	81, 201
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	137, 234, 278
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	62, 170, 262, 330
LpnPI	CCDG	8 cut(s)	21, 93, 207, 213, 234, 256, 283, 349
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	160
MalI	GATC	4 cut(s)	64, 172, 264, 332
MboI	GATC	4 cut(s)	62, 170, 262, 330
MboII	GAAGA	2 cut(s)	125, 337
MhlI	GDGCHC	3 cut(s)	79, 229, 304
MluCI	AATT	3 cut(s)	52, 149, 195
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	2 cut(s)	12, 276
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	92, 355
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	2 cut(s)	222, 271
MvaI	CCWGG	2 cut(s)	222, 271
NcoI	CCATGG	1 cut(s)	230
NdeII	GATC	4 cut(s)	62, 170, 262, 330
NlaIII	CATG	3 cut(s)	137, 234, 278
NlaIV	GGNNCC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	335
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	220, 269
PspGI	CCWGG	2 cut(s)	220, 269
PspN4I	GGNNCC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	92, 355
Sau3AI	GATC	4 cut(s)	62, 170, 262, 330
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	222, 271
SduI	GDGCHC	3 cut(s)	79, 229, 304
SetI	ASST	6 cut(s)	35, 76, 132, 163, 226, 304
SfaNI	GCATC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	3 cut(s)	52, 149, 195
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	220, 269
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	61, 169
TasI	AATT	3 cut(s)	52, 149, 195
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	92, 355
Tru9I	TTAA	2 cut(s)	92, 355
TscAI	CASTG	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	122, 334
TspRI	CASTG	1 cut(s)	286
VneI	GTGCAC	1 cut(s)	225
XapI	RAATTY	2 cut(s)	149, 195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.