Rroxscaffold_6G00398580

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005554
Physical Location & Seq
Forward (+)
20447056 .. 20448266
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398580.1

Sequence Viewer

Length: 363 bp
ATGCTGGAAAAATTATTTACAGAAAATGTTCCCGTTAAATGTTTTATATACGGTATAGCAGAAGGAGCAGGCCCACAACTTCAAACATTCTTCTTCTGGTCGGTGTTTGCTAAAGATGTTGAAAAAGACTCGGTTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACACACAGTAATTGACAAATTTGCAGAACGTGGTCTTCGATCCCTTGCTGTTGCACGGCAGGTTACGACAGTGCTGAAACTATTAGAAGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

120

Amino Acids

13.43

Weight (kDa)

5.43

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 316
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 284
AgsI TTSAA 4 cut(s) 83, 122, 159, 257
AluBI AGCT 2 cut(s) 155, 358
AluI AGCT 2 cut(s) 155, 358
Alw21I GWGCWC 1 cut(s) 360
AlwI GGATC 1 cut(s) 300
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 146, 188
ApoI RAATTY 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 133, 200
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 338
BfaI CTAG 1 cut(s) 361
BfuAI ACCTGC 1 cut(s) 316
BisI GCNGC 2 cut(s) 147, 189
BlsI GCNGC 2 cut(s) 148, 190
BmgT120I GGNCC 1 cut(s) 71
BmsI GCATC 2 cut(s) 166, 175
BpiI GAAGAC 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 2 cut(s) 133, 200
BshFI GGCC 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 360
BsnI GGCC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 268, 360
Bsp143I GATC 1 cut(s) 305
BspANI GGCC 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 207
BssMI GATC 1 cut(s) 305
Bst4CI ACNGT 3 cut(s) 53, 274, 337
Bst6I CTCTTC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 70, 207
BstDEI CTNAG 1 cut(s) 216
BstKTI GATC 1 cut(s) 308
BstMBI GATC 1 cut(s) 305
BstMWI GCNNNNNNNGC 5 cut(s) 65, 152, 185, 197, 206
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 133, 200
BstV2I GAAGAC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 70, 207
Cfr13I GGNCC 1 cut(s) 71
CviAII CATG 1 cut(s) 237
CviJI RGCY 5 cut(s) 72, 146, 155, 209, 358
CviKI_1 RGCY 5 cut(s) 72, 146, 155, 209, 358
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 1 cut(s) 240
FaiI YATR 4 cut(s) 47, 49, 56, 238
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 147, 189
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 147, 189
FspBI CTAG 1 cut(s) 361
GluI GCNGC 2 cut(s) 147, 189
HaeIII GGCC 1 cut(s) 72
Hin1II CATG 1 cut(s) 240
HinfI GANTC 2 cut(s) 128, 212
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 3 cut(s) 53, 274, 337
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 5 cut(s) 149, 188, 200, 290, 320
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 152, 185, 197, 206
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 1 cut(s) 240
Kzo9I GATC 1 cut(s) 305
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 4 cut(s) 54, 82, 191, 311
Lsp1109I GCAGC 2 cut(s) 133, 200
LweI GCATC 2 cut(s) 166, 175
MaeI CTAG 1 cut(s) 361
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 328
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MboII GAAGA 3 cut(s) 82, 85, 293
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 268, 360
MluCI AATT 5 cut(s) 11, 192, 229, 276, 284
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 1 cut(s) 36
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 5 cut(s) 65, 152, 185, 197, 206
NdeII GATC 1 cut(s) 305
NlaIII CATG 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 148, 190
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 71
SacI GAGCTC 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 147, 189
Sau3AI GATC 1 cut(s) 305
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 2 cut(s) 268, 360
SetI ASST 5 cut(s) 157, 164, 298, 330, 360
SfaNI GCATC 2 cut(s) 166, 175
Sse9I AATT 5 cut(s) 11, 192, 229, 276, 284
SspMI CTAG 1 cut(s) 361
SstI GAGCTC 1 cut(s) 360
TaaI ACNGT 3 cut(s) 53, 274, 337
TaiI ACGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 304
TasI AATT 5 cut(s) 11, 192, 229, 276, 284
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 342
TseI GCWGC 2 cut(s) 146, 188
TspRI CASTG 1 cut(s) 342
XapI RAATTY 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.