Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Reverse (-)

60544726 .. 60548550

Gene Structure 3825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAAAGTACGCCACGGAAAAGCAAAGCAGAGAAAGCACAAGAGTGTTCCAAATTAAGGGAGAAGATGAATATTCATGATACCGGCATTCCACGTATATGTTTTCCAAGGAATTCAGACGAATTGGTGCATGTTTCTACAAGAAGGAATGAAGGTAATGATTCCCTTGTGCCTCCCGGATTTCCTCCCAAAAGGAATAGGCAAGAAGCTGATGATCCTGTGGATGAAGATGACCTAACTATAGCTGAAGCTCTGAAGAAGAGGAAGAAGCATAAAACTGTCAAAACCAGAAAAGACAGCGACAGTGAGAAGTTACCAAGTCAACATCAAATCTTGTCATCTTCAATTGCAGATGAAGGCACGTCTGTAATTATTAAGAAGACTGAAACATTGGAGACAGAGGTTCCTTTGATTAAAGCTTTGATTTGGGGAGGTAAGGGTAAGAGGAAAATCAGAAATGTAATGAGAAGCAAGGAAAAAGGCAGCTCTTTATTTGAGAAACCGGAAGGTTCTAGCTGCATCTCTTCATATGAAAAACGAGTGTTCGAGCTTAAAGCTGATGCTAACCGGCTTAAAAAGATGAAGAATCACACAGTGAGGGATGCCAGATCTATGAGGGATGCCAAAAATCTATACTCATCTCTTAAAGTAGCTCCAGTAGTCAATGGTCATCACTTGTACATAGCAGGGTGTATCACAAAGAGAATGACAGCCATTGAAGAAATGGCTGGGATGGATGTGCTCTGCAGTGATAAAACAGAAACTTTAACTCTCAACAAGTTAACAGTGGACAAGAATCTGATAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

269

Amino Acids

30.34

Weight (kDa)

9.55

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	267, 275
AdeI	CACNNNGTG	1 cut(s)	595
AfaI	GTAC	2 cut(s)	10, 680
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	345, 719
AjiI	CACGTC	1 cut(s)	363
AleI	CACNNNNGTG	1 cut(s)	43
AluBI	AGCT	9 cut(s)	209, 245, 251, 419, 486, 516, 550, 557, 653
AluI	AGCT	9 cut(s)	209, 245, 251, 419, 486, 516, 550, 557, 653
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	483, 516
ApoI	RAATTY	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	2 cut(s)	495, 503
BccI	CCATC	1 cut(s)	727
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	2 cut(s)	240, 745
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	2 cut(s)	484, 517
BlsI	GCNGC	2 cut(s)	485, 518
Bme1390I	CCNGG	1 cut(s)	177
BmgBI	CACGTC	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	4 cut(s)	528, 550, 592, 610
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	639
BpuMI	CCSGG	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	14, 107
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse118I	RCCGGY	2 cut(s)	83, 567
Bse1I	ACTGG	1 cut(s)	656
BseDI	CCNNGG	2 cut(s)	14, 107
BseGI	GGATG	5 cut(s)	229, 607, 625, 738, 742
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	656
BseXI	GCAGC	2 cut(s)	495, 503
BseYI	CCCAGC	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	744
BsiSI	CCGG	4 cut(s)	84, 177, 503, 568
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	2 cut(s)	214, 608
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	1 cut(s)	749
BspPI	GGATC	1 cut(s)	209
BsrFI	RCCGGY	2 cut(s)	83, 567
BsrGI	TGTACA	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	656
BssAI	RCCGGY	2 cut(s)	83, 567
BssECI	CCNNGG	2 cut(s)	14, 107
BssMI	GATC	2 cut(s)	214, 608
BssT1I	CCWWGG	1 cut(s)	107
Bst4CI	ACNGT	4 cut(s)	280, 305, 595, 787
Bst6I	CTCTTC	2 cut(s)	254, 529
BstAUI	TGTACA	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	5 cut(s)	229, 607, 625, 738, 742
BstKTI	GATC	2 cut(s)	217, 611
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	214, 608
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	2 cut(s)	240, 745
BstV1I	GCAGC	2 cut(s)	495, 503
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BtgI	CCRYGG	1 cut(s)	14
BtrI	CACGTC	1 cut(s)	363
BtsCI	GGATG	5 cut(s)	229, 607, 625, 738, 742
BtsI	GCAGTG	1 cut(s)	754
BtsIMutI	CAGTG	4 cut(s)	310, 600, 754, 792
CciI	TCATGA	1 cut(s)	76
Cfr10I	RCCGGY	2 cut(s)	83, 567
Csp6I	GTAC	2 cut(s)	9, 679
CviAII	CATG	2 cut(s)	77, 131
CviQI	GTAC	2 cut(s)	9, 679
DpnI	GATC	2 cut(s)	216, 610
DpnII	GATC	2 cut(s)	214, 608
DraIII	CACNNNGTG	1 cut(s)	595
Eam1104I	CTCTTC	2 cut(s)	254, 529
EarI	CTCTTC	2 cut(s)	254, 529
Eco130I	CCWWGG	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	267, 275
EcoRI	GAATTC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	80, 134
FatI	CATG	2 cut(s)	76, 130
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	484, 517
FokI	GGATG	5 cut(s)	236, 614, 632, 745, 749
Fsp4HI	GCNGC	2 cut(s)	484, 517
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	2 cut(s)	484, 517
GsaI	CCCAGC	1 cut(s)	732
GsuI	CTGGAG	1 cut(s)	639
HapII	CCGG	4 cut(s)	84, 177, 503, 568
Hin1II	CATG	2 cut(s)	80, 134
HincII	GTYRAC	2 cut(s)	323, 783
HindII	GTYRAC	2 cut(s)	323, 783
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	3 cut(s)	161, 586, 796
HpaI	GTTAAC	1 cut(s)	783
HpaII	CCGG	4 cut(s)	84, 177, 503, 568
Hpy166II	GTNNAC	3 cut(s)	323, 783, 790
Hpy188I	TCNGA	4 cut(s)	118, 255, 455, 801
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	3 cut(s)	323, 783, 790
HpyAV	CCTTC	4 cut(s)	138, 146, 350, 500
HpyCH4III	ACNGT	4 cut(s)	280, 305, 595, 787
HpyCH4IV	ACGT	2 cut(s)	94, 362
HpyCH4V	TGCA	4 cut(s)	130, 350, 519, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	2 cut(s)	94, 362
Hsp92II	CATG	2 cut(s)	80, 134
KspAI	GTTAAC	1 cut(s)	783
Kzo9I	GATC	2 cut(s)	214, 608
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	2 cut(s)	495, 503
LweI	GCATC	4 cut(s)	528, 550, 592, 610
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	2 cut(s)	94, 362
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	2 cut(s)	216, 610
MboI	GATC	2 cut(s)	214, 608
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	1 cut(s)	744
MluCI	AATT	5 cut(s)	53, 112, 122, 345, 369
MnlI	CCTC	8 cut(s)	183, 195, 255, 394, 425, 438, 591, 609
MseI	TTAA	8 cut(s)	56, 375, 414, 552, 573, 645, 767, 782
MslI	CAYNNNNRTG	2 cut(s)	43, 97
MspI	CCGG	4 cut(s)	84, 177, 503, 568
MspR9I	CCNGG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	2 cut(s)	214, 608
NlaIII	CATG	2 cut(s)	80, 134
NlaIV	GGNNCC	1 cut(s)	405
NspI	RCATGY	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	43
PagI	TCATGA	1 cut(s)	76
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	161, 586, 796
PfoI	TCCNGGA	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	485, 518
Ppu21I	YACGTR	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	728
PspN4I	GGNNCC	1 cut(s)	405
PstI	CTGCAG	1 cut(s)	749
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	2 cut(s)	10, 680
RsaNI	GTAC	2 cut(s)	9, 679
RseI	CAYNNNNRTG	2 cut(s)	43, 97
SaqAI	TTAA	8 cut(s)	56, 375, 414, 552, 573, 645, 767, 782
SatI	GCNGC	2 cut(s)	484, 517
Sau3AI	GATC	2 cut(s)	214, 608
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	744
SfaNI	GCATC	4 cut(s)	528, 550, 592, 610
SfcI	CTRYAG	2 cut(s)	240, 745
SmiMI	CAYNNNNRTG	2 cut(s)	43, 97
Sse9I	AATT	5 cut(s)	53, 112, 122, 345, 369
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	4 cut(s)	280, 305, 595, 787
TaiI	ACGT	2 cut(s)	97, 365
TaqI	TCGA	1 cut(s)	546
TasI	AATT	5 cut(s)	53, 112, 122, 345, 369
TatI	WGTACW	1 cut(s)	678
TfiI	GAWTC	3 cut(s)	161, 586, 796
Tru1I	TTAA	8 cut(s)	56, 375, 414, 552, 573, 645, 767, 782
Tru9I	TTAA	8 cut(s)	56, 375, 414, 552, 573, 645, 767, 782
TscAI	CASTG	4 cut(s)	310, 600, 754, 792
TseI	GCWGC	2 cut(s)	483, 516
TspDTI	ATGAA	9 cut(s)	17, 65, 83, 165, 240, 369, 516, 546, 596
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	4 cut(s)	310, 600, 754, 792
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.