Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Forward (+)

12112772 .. 12114504

Gene Structure 1733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG128000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTGATGGTGTTTGCTAAAGATGTTGAAAAAGACTCGGTTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGGCACGAGCCGGAATTACAGAAGTTCACTTCCTTCCTTTCAATCCAACTGATAAGGGGACAGCACTTACATACCTAGACAAAGCTGGTAAAATGCACAGAGTGAGCAAAGGTGCACCAGAGCAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACACACAGTAATTGAAAAATTTGCAGAACGTGGTCTTCGATCCCTTGCTGTTGCACGGCAGATTTCTCTTCCTCTGATGCTAATGGATAATGATTTCTGTAATTTACCTGAAGTACCTGCTGGAACCAAAGACAGTCCTGGTGGACCTTGGGAGTTTGCTGGTCTTCTACCTTTGTTTGATCCACCACGTCACGACAGTGCTGAAACTATTAGAAGAGCTCTAGATCTTGGTGTGAGTGTTAAGATGATTACAGGTAATGTTGGTTATGAACTTGCGTTACAGTTTGCTAACGTACTTTGCATTGCTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

203

Amino Acids

22.14

Weight (kDa)

5.83

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	421
AclWI	GGATC	2 cut(s)	330, 470
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	2 cut(s)	411, 591
AgsI	TTSAA	5 cut(s)	29, 66, 169, 287, 311
AjiI	CACGTC	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	433
AleI	CACNNNNGTG	1 cut(s)	492
AluBI	AGCT	3 cut(s)	62, 212, 515
AluI	AGCT	3 cut(s)	62, 212, 515
Alw21I	GWGCWC	2 cut(s)	244, 517
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	330, 470
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	53, 95
ApoI	RAATTY	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	244, 298
BanII	GRGCYC	1 cut(s)	517
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	2 cut(s)	323, 452
Bbv12I	GWGCWC	2 cut(s)	244, 517
BbvI	GCAGC	2 cut(s)	40, 107
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	435
BfaI	CTAG	2 cut(s)	203, 518
BfuAI	ACCTGC	1 cut(s)	421
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	2 cut(s)	54, 96
BlsI	GCNGC	2 cut(s)	55, 97
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	440
BmgBI	CACGTC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	3 cut(s)	73, 82, 363
BpiI	GAAGAC	2 cut(s)	323, 452
BsaJI	CCNNGG	1 cut(s)	443
Bse3DI	GCAATG	2 cut(s)	114, 597
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	443
BseMI	GCAATG	2 cut(s)	114, 597
BseSI	GKGCMC	2 cut(s)	244, 298
BseXI	GCAGC	2 cut(s)	40, 107
BsiHKAI	GWGCWC	2 cut(s)	244, 517
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	199
Bsp1286I	GDGCHC	3 cut(s)	244, 298, 517
Bsp143I	GATC	3 cut(s)	335, 475, 520
BspLI	GGNNCC	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	2 cut(s)	330, 470
BspQI	GCTCTTC	1 cut(s)	505
BsrDI	GCAATG	2 cut(s)	114, 597
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	3 cut(s)	335, 475, 520
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	4 cut(s)	304, 431, 494, 579
Bst6I	CTCTTC	2 cut(s)	369, 505
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	3 cut(s)	338, 478, 523
BstMBI	GATC	3 cut(s)	335, 475, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 92, 104, 113
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSLI	GKGCMC	2 cut(s)	244, 298
BstV1I	GCAGC	2 cut(s)	40, 107
BstV2I	GAAGAC	2 cut(s)	323, 452
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BtrI	CACGTC	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	410, 590
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	6 cut(s)	53, 62, 116, 137, 212, 515
CviKI_1	RGCY	6 cut(s)	53, 62, 116, 137, 212, 515
CviQI	GTAC	2 cut(s)	410, 590
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	3 cut(s)	337, 477, 522
DpnII	GATC	3 cut(s)	335, 475, 520
DraIII	CACNNNGTG	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	369, 505
EarI	CTCTTC	2 cut(s)	369, 505
Ecl136II	GAGCTC	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	1 cut(s)	270
FaiI	YATR	3 cut(s)	199, 268, 564
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	54, 96
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	2 cut(s)	54, 96
FspBI	CTAG	2 cut(s)	203, 518
GluI	GCNGC	2 cut(s)	54, 96
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	2 cut(s)	35, 119
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	3 cut(s)	154, 242, 440
Hpy188I	TCNGA	2 cut(s)	280, 372
Hpy188III	TCNNGA	3 cut(s)	80, 488, 518
Hpy8I	GTNNAC	3 cut(s)	154, 242, 440
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	4 cut(s)	304, 431, 494, 579
HpyCH4IV	ACGT	3 cut(s)	325, 484, 588
HpyCH4V	TGCA	8 cut(s)	56, 95, 107, 223, 242, 320, 350, 597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 92, 104, 113
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	3 cut(s)	325, 484, 588
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	335, 475, 520
LguI	GCTCTTC	1 cut(s)	505
Lsp1109I	GCAGC	2 cut(s)	40, 107
LweI	GCATC	3 cut(s)	73, 82, 363
MaeI	CTAG	2 cut(s)	203, 518
MaeII	ACGT	3 cut(s)	325, 484, 588
MaeIII	GTNAC	2 cut(s)	485, 573
MalI	GATC	3 cut(s)	337, 477, 522
MboI	GATC	3 cut(s)	335, 475, 520
MboII	GAAGA	4 cut(s)	323, 356, 452, 522
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	3 cut(s)	244, 298, 517
MluCI	AATT	6 cut(s)	99, 141, 259, 306, 314, 397
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	51, 197
MnlI	CCTC	3 cut(s)	121, 285, 378
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	492
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	435
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	59, 92, 104, 113
NdeII	GATC	3 cut(s)	335, 475, 520
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	485
OliI	CACNNNNGTG	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	55, 97
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	440
PsrI	GAACNNNNNNTAC	2 cut(s)	558, 590
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	2 cut(s)	411, 591
RsaNI	GTAC	2 cut(s)	410, 590
RseI	CAYNNNNRTG	1 cut(s)	492
SacI	GAGCTC	1 cut(s)	517
SapI	GCTCTTC	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	2 cut(s)	54, 96
Sau3AI	GATC	3 cut(s)	335, 475, 520
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	244, 298, 517
SfaNI	GCATC	3 cut(s)	73, 82, 363
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	6 cut(s)	99, 141, 259, 306, 314, 397
SspMI	CTAG	2 cut(s)	203, 518
SstI	GAGCTC	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	4 cut(s)	304, 431, 494, 579
TaiI	ACGT	3 cut(s)	328, 487, 591
TaqI	TCGA	1 cut(s)	334
TasI	AATT	6 cut(s)	99, 141, 259, 306, 314, 397
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	2 cut(s)	53, 95
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	1 cut(s)	579
TspRI	CASTG	1 cut(s)	499
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	314
XbaI	TCTAGA	1 cut(s)	517
XspI	CTAG	2 cut(s)	203, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.