Rmu_sc0012237.1_g000003

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012237.1
OG0005554
Physical Location & Seq
Reverse (-)
26286 .. 26856
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012237.1_g000003.1.cds

Sequence Viewer

Length: 348 bp
atggctgcaagagcttcaaggttggaaaatgaagatgccattgatgcagcaattgttgcaatgctggctgattctatggagatagtagaccttataactgaaaatgcacgagccggaattacagaagttcacttccttcctttcaatccaactggtaagaggacagcacttacatacctagacaaagctggtaaaatgcacagagtgagcaaaggtgcaccagagcagatactcaatttggcatggaacaaatcagatattgaaaagagggcacacacagtaagtgaaaaatttgcagaacgtggtcttcgatcccttgctgttgcacggcaggtaaccaagatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

115

Amino Acids

12.67

Weight (kDa)

9.1

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 322
AccI GTMKAC 1 cut(s) 87
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 205
AgsI TTSAA 3 cut(s) 18, 145, 263
AluBI AGCT 2 cut(s) 14, 188
AluI AGCT 2 cut(s) 14, 188
Alw21I GWGCWC 1 cut(s) 220
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 1 cut(s) 306
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 5, 47
ApoI RAATTY 1 cut(s) 290
BaeGI GKGCMC 2 cut(s) 220, 274
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 344
BfaI CTAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 2 cut(s) 6, 48
BlsI GCNGC 2 cut(s) 7, 49
BmsI GCATC 2 cut(s) 25, 34
BpiI GAAGAC 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 157
BseSI GKGCMC 2 cut(s) 220, 274
BseXI GCAGC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 220, 274
Bsp143I GATC 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 1 cut(s) 157
BssMI GATC 1 cut(s) 311
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 280
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 66
BstEII GGTNACC 1 cut(s) 334
BstKTI GATC 1 cut(s) 314
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 4 cut(s) 11, 44, 56, 65
BstPI GGTNACC 1 cut(s) 334
BstSLI GKGCMC 2 cut(s) 220, 274
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 299
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 66
CviAII CATG 1 cut(s) 243
CviJI RGCY 5 cut(s) 5, 14, 68, 113, 188
CviKI_1 RGCY 5 cut(s) 5, 14, 68, 113, 188
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
DraIII CACNNNGTG 1 cut(s) 205
Eco91I GGTNACC 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 334
FaeI CATG 1 cut(s) 246
FaiI YATR 4 cut(s) 77, 95, 175, 244
FatI CATG 1 cut(s) 242
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 6, 48
Fsp4HI GCNGC 2 cut(s) 6, 48
FspBI CTAG 1 cut(s) 179
GluI GCNGC 2 cut(s) 6, 48
HapII CCGG 1 cut(s) 114
Hin1II CATG 1 cut(s) 246
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 114
Hpy166II GTNNAC 3 cut(s) 88, 130, 218
Hpy188I TCNGA 1 cut(s) 256
Hpy8I GTNNAC 3 cut(s) 88, 130, 218
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 8 cut(s) 8, 47, 59, 107, 199, 218, 296, 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 44, 56, 65
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 1 cut(s) 246
Kzo9I GATC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 50, 127, 138, 174, 234, 317
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 2 cut(s) 25, 34
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 2 cut(s) 44, 299
MfeI CAATTG 1 cut(s) 51
MhlI GDGCHC 2 cut(s) 220, 274
MluCI AATT 4 cut(s) 51, 117, 235, 290
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 2 cut(s) 153, 261
MseI TTAA 1 cut(s) 346
MspI CCGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 11, 44, 56, 65
NdeII GATC 1 cut(s) 311
NlaIII CATG 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 7, 49
PsiI TTATAA 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 2 cut(s) 6, 48
Sau3AI GATC 1 cut(s) 311
SduI GDGCHC 2 cut(s) 220, 274
SetI ASST 8 cut(s) 16, 23, 93, 180, 190, 217, 304, 336
SfaNI GCATC 2 cut(s) 25, 34
Sse9I AATT 4 cut(s) 51, 117, 235, 290
SspMI CTAG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 310
TasI AATT 4 cut(s) 51, 117, 235, 290
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TseI GCWGC 2 cut(s) 5, 47
TspDTI ATGAA 1 cut(s) 45
VneI GTGCAC 1 cut(s) 216
XapI RAATTY 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.