Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Reverse (-)

29313592 .. 29323662

Gene Structure 10071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTCAAGGGCGTTTTGGTGTTTGCTAAAGATGTTGAAAAAGACTCGATTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACACATAGTAATTGACAAATTTGCAGAACGTGGTCTTCGATCCCTTGCTGTTGCACGGCAGATGCTTCATTTCGAGCATAAATATGAGATTGTTCAAAGATTACAAATTAAGAAGCACATAGTTGGAATGACCGGTGATGGAGTTAATGATGCACCTGCCTTGAAGAAAGCAAACATAGGAATTGCTGTGGCAGATGCCACAGATGCTGCTCGTAGTGTGTCCGATATAGTACGACACAGCCTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

143

Amino Acids

15.74

Weight (kDa)

8.02

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	346
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	1 cut(s)	414
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	6 cut(s)	7, 38, 75, 173, 278, 346
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	389
ApeKI	GCWGC	3 cut(s)	62, 104, 389
ApoI	RAATTY	1 cut(s)	200
AsiGI	ACCGGT	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	3 cut(s)	49, 116, 376
BccI	CCATC	2 cut(s)	52, 314
BceAI	ACGGC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	3 cut(s)	63, 105, 390
BlsI	GCNGC	3 cut(s)	64, 106, 391
BmsI	GCATC	6 cut(s)	82, 91, 234, 322, 367, 376
BpiI	GAAGAC	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	49, 116, 376
BshTI	ACCGGT	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssMI	GATC	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 101, 113, 122, 386
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	3 cut(s)	49, 116, 376
BstV2I	GAAGAC	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	123
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	413
CspAI	ACCGGT	1 cut(s)	314
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	4 cut(s)	62, 71, 125, 423
CviKI_1	RGCY	4 cut(s)	62, 71, 125, 423
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
FaeI	CATG	1 cut(s)	156
FaiI	YATR	7 cut(s)	154, 188, 261, 267, 302, 359, 410
FatI	CATG	1 cut(s)	152
Fnu4HI	GCNGC	3 cut(s)	63, 105, 390
Fsp4HI	GCNGC	3 cut(s)	63, 105, 390
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	3 cut(s)	63, 105, 390
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	1 cut(s)	156
HinfI	GANTC	2 cut(s)	44, 128
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	166, 406
Hpy188III	TCNNGA	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	6 cut(s)	65, 104, 116, 206, 236, 335
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 101, 113, 122, 386
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	221
LpnPI	CCDG	3 cut(s)	107, 328, 351
Lsp1109I	GCAGC	3 cut(s)	49, 116, 376
LweI	GCATC	6 cut(s)	82, 91, 234, 322, 367, 376
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	211
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	2 cut(s)	209, 358
MfeI	CAATTG	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	6 cut(s)	108, 145, 192, 200, 288, 363
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	60, 286
MnlI	CCTC	1 cut(s)	171
MseI	TTAA	2 cut(s)	291, 327
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	68, 101, 113, 122, 386
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	128
PinAI	ACCGGT	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	64, 106, 391
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	291, 327
SatI	GCNGC	3 cut(s)	63, 105, 390
Sau3AI	GATC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	4 cut(s)	73, 80, 214, 340
SfaNI	GCATC	6 cut(s)	82, 91, 234, 322, 367, 376
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	6 cut(s)	108, 145, 192, 200, 288, 363
SspMI	CTAG	1 cut(s)	425
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	3 cut(s)	47, 220, 255
TasI	AATT	6 cut(s)	108, 145, 192, 200, 288, 363
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	291, 327
Tru9I	TTAA	2 cut(s)	291, 327
TseI	GCWGC	3 cut(s)	62, 104, 389
TspDTI	ATGAA	1 cut(s)	239
XapI	RAATTY	1 cut(s)	200
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.