Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Reverse (-)

49155734 .. 49157481

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG271200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGACAGCCATTGAAGAAATGGTTGGGATGGATGTGCTCTGCAGTGATAAAACAGGAACTTTAACTCTCAACAAGTTAACAGTGGACAAGAATCTGATAGAGGTGTTTGCTAAAGATGTTGAAAAAGACTCGGTTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGGCACGAGCCGGAATTACAGAAGTTCACTTCCTTCCTTTCAATCCAACTGATAAGAGGACAGCACTTACATACCTAGACAAAGCTGGTAAAATGCACAGAGTGAGCAAAGGTGCACCAGAGCAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACACACAGTAATTGACAAATTTGCAGAACGTGGTCTTCGATCCCTTGCTGTTGCACGGCAGATTTCTCTTCCTCTGATGCTAATGGATAATGATTTCTGTAATTTACTTGAAGTACCTGCTGGAACCAAAGACAGTCCTTGTGGACCTTGGGAGTTTGTTGGTCTTCTACCTTTGTTTGATCCACCACGTCACGACAGTGCTGAAACTATTAGAAGAGCTCTAGATCTTGGTGTGAGTGTTAAGATGATTACAGGCGATCAACTAGCAATTGCTAAAGAGACAGGGAGACGACTTGGGATGGGATCAAACATGTATCCATCATCTTCATTGCTTGGTGAAAATAAGAATGGATTAGATGCAAGTCTACAAATTGATGAACTCATTGAGAATGCTGATGGTTTTGCTGGTATCTTTCCAGGTAATGTTGGTTATGAACTTGCGTTACAGTTTGCTAACGTACTTTGCATTGCTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

289

Amino Acids

31.42

Weight (kDa)

5.07

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	754
AclWI	GGATC	3 cut(s)	423, 563, 700
AcsI	RAATTY	1 cut(s)	407
AdeI	CACNNNGTG	1 cut(s)	322
AfaI	GTAC	2 cut(s)	504, 849
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	6 cut(s)	14, 122, 159, 262, 380, 500
AjiI	CACGTC	1 cut(s)	578
AjnI	CCWGG	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	3 cut(s)	155, 305, 608
AluI	AGCT	3 cut(s)	155, 305, 608
Alw21I	GWGCWC	3 cut(s)	39, 337, 610
Alw26I	GTCTC	2 cut(s)	662, 670
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	423, 563, 700
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	146, 188
ApoI	RAATTY	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	737
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	2 cut(s)	337, 391
BanII	GRGCYC	1 cut(s)	610
BauI	CACGAG	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	416, 545
Bbv12I	GWGCWC	3 cut(s)	39, 337, 610
BbvI	GCAGC	2 cut(s)	133, 200
BccI	CCATC	5 cut(s)	22, 136, 682, 715, 779
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	807
BciVI	GTATCC	1 cut(s)	714
BcoDI	GTCTC	2 cut(s)	662, 670
BfaI	CTAG	3 cut(s)	296, 611, 653
BfmI	CTRYAG	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	714
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	2 cut(s)	147, 189
BlsI	GCNGC	2 cut(s)	148, 190
Bme1390I	CCNGG	1 cut(s)	807
Bme18I	GGWCC	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	1 cut(s)	807
BmsI	GCATC	4 cut(s)	166, 175, 456, 736
BpiI	GAAGAC	2 cut(s)	416, 545
BsaJI	CCNNGG	1 cut(s)	536
Bse3DI	GCAATG	3 cut(s)	207, 716, 855
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	3 cut(s)	33, 37, 693
BseMI	GCAATG	3 cut(s)	207, 716, 855
BseSI	GKGCMC	2 cut(s)	337, 391
BseXI	GCAGC	2 cut(s)	133, 200
BsiHKAI	GWGCWC	3 cut(s)	39, 337, 610
BsiSI	CCGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	662, 670
BsmBI	CGTCTC	1 cut(s)	670
BsmI	GAATGC	1 cut(s)	784
Bsp1286I	GDGCHC	4 cut(s)	39, 337, 391, 610
Bsp143I	GATC	5 cut(s)	428, 568, 613, 646, 692
BspLI	GGNNCC	1 cut(s)	514
BspMAI	CTGCAG	1 cut(s)	44
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	3 cut(s)	423, 563, 700
BspQI	GCTCTTC	1 cut(s)	598
BsrDI	GCAATG	3 cut(s)	207, 716, 855
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	5 cut(s)	428, 568, 613, 646, 692
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	5 cut(s)	82, 397, 524, 587, 837
Bst6I	CTCTTC	2 cut(s)	462, 598
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	33, 37, 693
BstKTI	GATC	5 cut(s)	431, 571, 616, 649, 695
BstMAI	GTCTC	2 cut(s)	662, 670
BstMBI	GATC	5 cut(s)	428, 568, 613, 646, 692
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 185, 197, 206
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	1 cut(s)	805
BstSFI	CTRYAG	1 cut(s)	40
BstSLI	GKGCMC	2 cut(s)	337, 391
BstV1I	GCAGC	2 cut(s)	133, 200
BstV2I	GAAGAC	2 cut(s)	416, 545
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	714
BtrI	CACGTC	1 cut(s)	578
BtsCI	GGATG	3 cut(s)	33, 37, 693
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	3 cut(s)	49, 87, 592
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	503, 848
CviAII	CATG	2 cut(s)	360, 700
CviJI	RGCY	7 cut(s)	8, 146, 155, 209, 230, 305, 608
CviKI_1	RGCY	7 cut(s)	8, 146, 155, 209, 230, 305, 608
CviQI	GTAC	2 cut(s)	503, 848
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	5 cut(s)	430, 570, 615, 648, 694
DpnII	GATC	5 cut(s)	428, 568, 613, 646, 692
DraIII	CACNNNGTG	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	462, 598
EarI	CTCTTC	2 cut(s)	462, 598
Ecl136II	GAGCTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	533
Eco53kI	GAGCTC	1 cut(s)	608
EcoICRI	GAGCTC	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	536
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	536
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	2 cut(s)	363, 703
FaiI	YATR	4 cut(s)	292, 361, 701, 822
FatI	CATG	2 cut(s)	359, 699
FblI	GTMKAC	1 cut(s)	754
Fnu4HI	GCNGC	2 cut(s)	147, 189
FokI	GGATG	3 cut(s)	40, 44, 700
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	2 cut(s)	147, 189
FspBI	CTAG	3 cut(s)	296, 611, 653
GluI	GCNGC	2 cut(s)	147, 189
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	2 cut(s)	363, 703
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	3 cut(s)	91, 128, 212
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	6 cut(s)	78, 85, 247, 335, 533, 755
Hpy188I	TCNGA	3 cut(s)	96, 373, 465
Hpy188III	TCNNGA	3 cut(s)	173, 581, 611
Hpy8I	GTNNAC	6 cut(s)	78, 85, 247, 335, 533, 755
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	5 cut(s)	82, 397, 524, 587, 837
HpyCH4IV	ACGT	3 cut(s)	418, 577, 846
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 185, 197, 206
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	3 cut(s)	418, 577, 846
Hsp92II	CATG	2 cut(s)	363, 703
KspAI	GTTAAC	1 cut(s)	78
Kzo9I	GATC	5 cut(s)	428, 568, 613, 646, 692
LguI	GCTCTTC	1 cut(s)	598
Lsp1109I	GCAGC	2 cut(s)	133, 200
LweI	GCATC	4 cut(s)	166, 175, 456, 736
MaeI	CTAG	3 cut(s)	296, 611, 653
MaeII	ACGT	3 cut(s)	418, 577, 846
MaeIII	GTNAC	2 cut(s)	578, 831
MalI	GATC	5 cut(s)	430, 570, 615, 648, 694
MboI	GATC	5 cut(s)	428, 568, 613, 646, 692
MboII	GAAGA	6 cut(s)	26, 416, 449, 545, 615, 705
MfeI	CAATTG	2 cut(s)	192, 657
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	4 cut(s)	39, 337, 391, 610
MluCI	AATT	8 cut(s)	192, 234, 352, 399, 407, 490, 657, 759
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	144, 290
MnlI	CCTC	5 cut(s)	94, 214, 270, 378, 471
MseI	TTAA	3 cut(s)	62, 77, 630
MslI	CAYNNNNRTG	1 cut(s)	585
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	807
MunI	CAATTG	2 cut(s)	192, 657
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	4 cut(s)	152, 185, 197, 206
NdeII	GATC	5 cut(s)	428, 568, 613, 646, 692
NlaIII	CATG	2 cut(s)	363, 703
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	578
NspI	RCATGY	1 cut(s)	703
OliI	CACNNNNGTG	1 cut(s)	585
PciI	ACATGT	1 cut(s)	699
PciSI	GCTCTTC	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	1 cut(s)	424
PctI	GAATGC	1 cut(s)	784
PfeI	GAWTC	2 cut(s)	91, 212
PkrI	GCNGC	2 cut(s)	148, 190
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PscI	ACATGT	1 cut(s)	699
Psp124BI	GAGCTC	1 cut(s)	610
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	533
PsrI	GAACNNNNNNTAC	2 cut(s)	816, 848
PstI	CTGCAG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	2 cut(s)	504, 849
RsaNI	GTAC	2 cut(s)	503, 848
RseI	CAYNNNNRTG	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	610
SapI	GCTCTTC	1 cut(s)	598
SaqAI	TTAA	3 cut(s)	62, 77, 630
SatI	GCNGC	2 cut(s)	147, 189
Sau3AI	GATC	5 cut(s)	428, 568, 613, 646, 692
Sau96I	GGNCC	1 cut(s)	533
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	4 cut(s)	39, 337, 391, 610
SfaNI	GCATC	4 cut(s)	166, 175, 456, 736
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	585
Sse9I	AATT	8 cut(s)	192, 234, 352, 399, 407, 490, 657, 759
SspMI	CTAG	3 cut(s)	296, 611, 653
SstI	GAGCTC	1 cut(s)	610
StyD4I	CCNGG	1 cut(s)	805
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	5 cut(s)	82, 397, 524, 587, 837
TaiI	ACGT	3 cut(s)	421, 580, 849
TaqI	TCGA	1 cut(s)	427
TasI	AATT	8 cut(s)	192, 234, 352, 399, 407, 490, 657, 759
TfiI	GAWTC	2 cut(s)	91, 212
Tru1I	TTAA	3 cut(s)	62, 77, 630
Tru9I	TTAA	3 cut(s)	62, 77, 630
TscAI	CASTG	3 cut(s)	49, 87, 592
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	2 cut(s)	146, 188
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	3 cut(s)	705, 780, 837
TspRI	CASTG	3 cut(s)	49, 87, 592
VneI	GTGCAC	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	1 cut(s)	407
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	754
XspI	CTAG	3 cut(s)	296, 611, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.