Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Reverse (-)

64642269 .. 64647308

Gene Structure 5040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00045550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAATGATAGGAGCGTGTTTGCTAAAGATGTTGAAAAAGACTCGGTTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACACACAGTAATTGACAAATTTGCAGAACGTGGTCTTCGATCCCTTGCTGTTGCACGGCAGGGTCACGACAGCGATCAACTAGCAATTGCTAAAGAGACAGGGAGACGACTTGGGATGGGATCAAACATGTATCCATCATCTTCATTGCTTGGTGAAAATAAGAATGGATTAGATGCAAGTCTACAAATTGATGAACTCATTGAGAATGCTGATGGTTTTGCTGGTATCTTTCCAGGTAATGTTGGTTATGAACTTGCGTTACGTTTGCTAACGTACTTTGCATTGCTTCTATTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

159

Amino Acids

17.39

Weight (kDa)

4.96

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	361
AclWI	GGATC	2 cut(s)	213, 307
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	35, 72, 170
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	269, 277
AlwI	GGATC	2 cut(s)	213, 307
ApeKI	GCWGC	2 cut(s)	59, 101
ApoI	RAATTY	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	46, 113
BccI	CCATC	4 cut(s)	49, 289, 322, 386
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	414
BciVI	GTATCC	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	269, 277
BfaI	CTAG	2 cut(s)	260, 478
BfuI	GTATCC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	60, 102
BlsI	GCNGC	2 cut(s)	61, 103
Bme1390I	CCNGG	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	3 cut(s)	79, 88, 343
BpiI	GAAGAC	1 cut(s)	206
Bse3DI	GCAATG	3 cut(s)	120, 323, 461
BseBI	CCWGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	300
BseMI	GCAATG	3 cut(s)	120, 323, 461
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	46, 113
BsmAI	GTCTC	2 cut(s)	269, 277
BsmBI	CGTCTC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	218, 253, 299
BspPI	GGATC	2 cut(s)	213, 307
BsrDI	GCAATG	3 cut(s)	120, 323, 461
BssMI	GATC	3 cut(s)	218, 253, 299
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	221, 256, 302
BstMAI	GTCTC	2 cut(s)	269, 277
BstMBI	GATC	3 cut(s)	218, 253, 299
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 98, 110, 119
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	46, 113
BstV2I	GAAGAC	1 cut(s)	206
BsuI	GTATCC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	2 cut(s)	150, 307
CviJI	RGCY	3 cut(s)	59, 68, 122
CviKI_1	RGCY	3 cut(s)	59, 68, 122
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	3 cut(s)	220, 255, 301
DpnII	GATC	3 cut(s)	218, 253, 299
EcoRII	CCWGG	1 cut(s)	412
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	2 cut(s)	153, 310
FaiI	YATR	3 cut(s)	151, 308, 429
FatI	CATG	2 cut(s)	149, 306
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	60, 102
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	60, 102
FspBI	CTAG	2 cut(s)	260, 478
GluI	GCNGC	2 cut(s)	60, 102
Hin1II	CATG	2 cut(s)	153, 310
HinfI	GANTC	2 cut(s)	41, 125
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	86, 245
Hpy8I	GTNNAC	1 cut(s)	362
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	3 cut(s)	208, 442, 452
HpyCH4V	TGCA	7 cut(s)	62, 101, 113, 203, 233, 356, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 98, 110, 119
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	3 cut(s)	208, 442, 452
Hsp92II	CATG	2 cut(s)	153, 310
Kzo9I	GATC	3 cut(s)	218, 253, 299
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	6 cut(s)	104, 224, 264, 387, 399, 426
Lsp1109I	GCAGC	2 cut(s)	46, 113
LweI	GCATC	3 cut(s)	79, 88, 343
MaeI	CTAG	2 cut(s)	260, 478
MaeII	ACGT	3 cut(s)	208, 442, 452
MaeIII	GTNAC	2 cut(s)	242, 438
MalI	GATC	3 cut(s)	220, 255, 301
MboI	GATC	3 cut(s)	218, 253, 299
MboII	GAAGA	2 cut(s)	206, 312
MfeI	CAATTG	2 cut(s)	105, 264
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	6 cut(s)	105, 142, 189, 197, 264, 366
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	414
MunI	CAATTG	2 cut(s)	105, 264
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	65, 98, 110, 119
NdeII	GATC	3 cut(s)	218, 253, 299
NlaIII	CATG	2 cut(s)	153, 310
NmuCI	GTSAC	1 cut(s)	242
NspI	RCATGY	1 cut(s)	310
PciI	ACATGT	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	61, 103
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PsrI	GAACNNNNNNTAC	2 cut(s)	423, 455
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SatI	GCNGC	2 cut(s)	60, 102
Sau3AI	GATC	3 cut(s)	218, 253, 299
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	6 cut(s)	70, 77, 211, 418, 445, 455
SfaNI	GCATC	3 cut(s)	79, 88, 343
Sse9I	AATT	6 cut(s)	105, 142, 189, 197, 264, 366
SspMI	CTAG	2 cut(s)	260, 478
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	3 cut(s)	211, 445, 455
TaqI	TCGA	1 cut(s)	217
TasI	AATT	6 cut(s)	105, 142, 189, 197, 264, 366
TfiI	GAWTC	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	2 cut(s)	59, 101
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	4 cut(s)	17, 312, 387, 444
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	361
XspI	CTAG	2 cut(s)	260, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.