Rroxscaffold_4G00307700

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005554
Physical Location & Seq
Forward (+)
29137270 .. 29139145
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307700.1

Sequence Viewer

Length: 474 bp
ATGCTGGTGATGCGGTTTACTCGTAATCAACATGCAAACAAGGAGAACTTGAAAGATTTGTTAATTGTTGTTGCAATCGATATCCATACTTTCTTTGGAAAGTCAGCTGATCTTGTGGAGAACACGACACATGTTTTTGCCAAAGGTTTAAACAAGGATCAGGTTATACTTATGGCTGCAAGAGCATCGTGGTTAGAAAATCAAGATGCTATTGATACTGCAATTGTTTCAATGCTGTCAGACCCTAAGGAGATCCTTAACCTAGTGCATAATAAATCAGAAATTGAAAAGAAGGTACAAGCACTGATTGACAAGTTTGCAGAGCGAGGACTACAATCACTTGGTGTTGCTTGCCAGACAGTCTTGGTGGCCCCTGGGAATTCGTTGGCCTTCTCCCTCTCTTTGACCCTCCTCGCCATGACAGTGCTGAAGCAATCAGAAGAGCTCTGGAACTTGGTGTCAGTGTTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

157

Amino Acids

17.4

Weight (kDa)

6.41

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AclWI GGATC 2 cut(s) 165, 247
AcsI RAATTY 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 3 cut(s) 52, 231, 287
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 2 cut(s) 107, 445
AluI AGCT 2 cut(s) 107, 445
Alw21I GWGCWC 1 cut(s) 447
AlwI GGATC 2 cut(s) 165, 247
AoxI GGCC 2 cut(s) 369, 387
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 246
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 163
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 1 cut(s) 375
BfaI CTAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 2 cut(s) 194, 196
Bsa29I ATCGAT 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 373, 374
Bse21I CCTNAGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 375
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 373, 374
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 2 cut(s) 371, 389
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 447
BsnI GGCC 2 cut(s) 371, 389
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 3 cut(s) 109, 157, 252
BspACI CCGC 1 cut(s) 13
BspANI GGCC 2 cut(s) 371, 389
BspDI ATCGAT 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 2 cut(s) 165, 247
BspQI GCTCTTC 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 373, 374
BssMI GATC 3 cut(s) 109, 157, 252
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 361, 424
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 246
BstKTI GATC 3 cut(s) 112, 160, 255
BstMBI GATC 3 cut(s) 109, 157, 252
BstMWI GCNNNNNNNGC 2 cut(s) 10, 182
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 2 cut(s) 35, 134
BstSCI CCNGG 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 246
BsuRI GGCC 2 cut(s) 371, 389
BsuTUI ATCGAT 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 302, 429, 468
Cac8I GCNNGC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 78
Csp6I GTAC 1 cut(s) 296
CviAII CATG 3 cut(s) 32, 131, 418
CviJI RGCY 5 cut(s) 107, 176, 371, 389, 445
CviKI_1 RGCY 5 cut(s) 107, 176, 371, 389, 445
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 111, 159, 254
DpnII GATC 3 cut(s) 109, 157, 252
DraI TTTAAA 1 cut(s) 150
DraIII CACNNNGTG 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 447
Eco32I GATATC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 449
Eco81I CCTNAGG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 373
EcoRV GATATC 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 447
FaeI CATG 3 cut(s) 35, 134, 421
FaiI YATR 7 cut(s) 33, 87, 132, 167, 173, 270, 419
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 3 cut(s) 31, 130, 417
Fnu4HI GCNGC 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 263
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 371, 389
Hin1II CATG 3 cut(s) 35, 134, 421
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 3 cut(s) 241, 280, 439
Hpy188III TCNNGA 2 cut(s) 203, 448
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 2 cut(s) 286, 400
HpyCH4III ACNGT 2 cut(s) 361, 424
HpyCH4V TGCA 6 cut(s) 35, 74, 179, 221, 268, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 182
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 3 cut(s) 35, 134, 421
Kzo9I GATC 3 cut(s) 109, 157, 252
LguI GCTCTTC 1 cut(s) 435
LpnPI CCDG 5 cut(s) 146, 360, 368, 387, 433
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 2 cut(s) 194, 196
MaeI CTAG 1 cut(s) 263
MalI GATC 3 cut(s) 111, 159, 254
MboI GATC 3 cut(s) 109, 157, 252
MboII GAAGA 1 cut(s) 452
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 4 cut(s) 63, 222, 282, 379
MnlI CCTC 4 cut(s) 320, 407, 419, 422
MseI TTAA 4 cut(s) 62, 149, 258, 467
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 375
MssI GTTTAAAC 1 cut(s) 150
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 10, 182
NdeII GATC 3 cut(s) 109, 157, 252
NlaIII CATG 3 cut(s) 35, 134, 421
NlaIV GGNNCC 1 cut(s) 372
NspI RCATGY 2 cut(s) 35, 134
PasI CCCWGGG 1 cut(s) 374
PciI ACATGT 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 435
PkrI GCNGC 1 cut(s) 178
PmeI GTTTAAAC 1 cut(s) 150
PscI ACATGT 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 370
PsuI RGATCY 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 447
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 4 cut(s) 62, 149, 258, 467
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 109, 157, 252
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 1 cut(s) 447
SetI ASST 6 cut(s) 109, 148, 165, 264, 297, 447
SfaNI GCATC 2 cut(s) 194, 196
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 4 cut(s) 63, 222, 282, 379
SsiI CCGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 2 cut(s) 361, 424
TaqI TCGA 1 cut(s) 78
TasI AATT 4 cut(s) 63, 222, 282, 379
Tru1I TTAA 4 cut(s) 62, 149, 258, 467
Tru9I TTAA 4 cut(s) 62, 149, 258, 467
TscAI CASTG 3 cut(s) 309, 429, 468
TseI GCWGC 1 cut(s) 176
TspRI CASTG 3 cut(s) 309, 429, 468
XapI RAATTY 1 cut(s) 379
XceI RCATGY 2 cut(s) 35, 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.