Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005722.1

Orthogroup ID

OG0005554

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 701

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005722.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

cccattcaaagtactgatatatcgttggagcatcacttcaaggaatttgagaatgtaaaattgtatattccatccaggctttctgagggaaatgctagcacgagatacttgaagtggtggaaggaatcagtggcagggctcaaaatgaaaagtacgccacggaaaagcaaagcagagaaagcacaagagtgttccaaattaagggagaagattaatattcatgataccggcattccatgtatatgttttccaaggaattcagacgaattggtgcatgtttctacaagaaggaatgaaggtaatgattcccttgtgcctcccggatttcctcccaaaaggaataggcaagaagctgatgatcctgtggatgaagatgacctaactatagctgaagctctgaagaagaggaagaagcataaaactgtcgaaaccagaaaagacagagacagtgagaagttaccaagtcaacatcaaatcttgtcatcttcaattgcagatgaaggcacgtctgtaaatattaagaagacggaaacattggagacagaggttcctttgattaaagctttgatttggggaggtaagggtaagaggaaaatcagaaatgtaatgagaagcaaggcaaaaagcagctctttattaaccggaaggttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

217

Amino Acids

24.67

Weight (kDa)

9.62

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005554)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g08340
rosa_chinensis	RchiOBHm_Chr2g0142631 RchiOBHm_Chr5g0038641 RchiOBHm_Chr5g0070991
rosa_laevigata	RLG00000026599 RLG00000030416
rosa_multiflora	Rmu_co8081158.1_g000001 Rmu_co8186984.1_g000001 Rmu_sc0005722.1_g000001 Rmu_sc0006417.1_g000011 Rmu_sc0012237.1_g000003 Rmu_sc0038346.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036020 Rroxscaffold_1G00042390 Rroxscaffold_1G00042420 Rroxscaffold_1G00045550 Rroxscaffold_4G00307220 Rroxscaffold_4G00307700 Rroxscaffold_6G00398580 Rroxscaffold_7G00189540 Rroxscaffold_7G00189570
rosa_rugosa	Rorug05G0172400
rosa_samantha	Rh1CG020900 Rh4DG271200 Rh5CG296300 Rh5CG297300 Rh5CG297400 Rh5DG128000 Rh5DG292000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	44, 256
AcuI	CTGAAG	2 cut(s)	411, 419
AfaI	GTAC	2 cut(s)	13, 154
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	4 cut(s)	8, 40, 112, 489
AjiI	CACGTC	1 cut(s)	507
AjnI	CCWGG	1 cut(s)	74
AleI	CACNNNNGTG	1 cut(s)	187
AluBI	AGCT	5 cut(s)	353, 389, 395, 563, 630
AluI	AGCT	5 cut(s)	353, 389, 395, 563, 630
Alw26I	GTCTC	2 cut(s)	438, 533
AlwI	GGATC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	627
ApoI	RAATTY	2 cut(s)	44, 256
AseI	ATTAAT	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	321
AsuNHI	GCTAGC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	639
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	438, 533
BfaI	CTAG	2 cut(s)	96, 652
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	629
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	76, 321
BmgBI	CACGTC	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	76, 321
BmsI	GCATC	1 cut(s)	40
BmtI	GCTAGC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	158, 251
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	158, 251
BseGI	GGATG	2 cut(s)	71, 373
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	639
BsiSI	CCGG	3 cut(s)	228, 321, 642
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	2 cut(s)	438, 533
BsmI	GAATGC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	358
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	549
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	158, 251
BssMI	GATC	1 cut(s)	358
BssSI	CACGAG	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	424, 449
Bst6I	CTCTTC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	71, 373
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	438, 533
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	74, 319
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	639
BstV2I	GAAGAC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	507
BtsCI	GGATG	2 cut(s)	71, 373
BtsIMutI	CAGTG	2 cut(s)	135, 454
Cac8I	GCNNGC	1 cut(s)	97
CciI	TCATGA	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	12, 153
CviAII	CATG	3 cut(s)	221, 237, 275
CviJI	RGCY	7 cut(s)	79, 139, 353, 389, 395, 563, 630
CviKI_1	RGCY	7 cut(s)	79, 139, 353, 389, 395, 563, 630
CviQI	GTAC	2 cut(s)	12, 153
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	411, 419
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	3 cut(s)	224, 240, 278
FaiI	YATR	9 cut(s)	20, 66, 222, 238, 242, 244, 276, 386, 417
FalI	AAGNNNNNCTT	2 cut(s)	616, 648
FatI	CATG	3 cut(s)	220, 236, 274
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	2 cut(s)	58, 380
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	628
FspBI	CTAG	2 cut(s)	96, 652
GluI	GCNGC	1 cut(s)	628
HapII	CCGG	3 cut(s)	228, 321, 642
Hin1II	CATG	3 cut(s)	224, 240, 278
HincII	GTYRAC	1 cut(s)	467
HindII	GTYRAC	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	2 cut(s)	125, 305
HpaII	CCGG	3 cut(s)	228, 321, 642
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	4 cut(s)	85, 262, 399, 599
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	5 cut(s)	115, 282, 290, 494, 639
HpyCH4III	ACNGT	2 cut(s)	424, 449
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	2 cut(s)	274, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	3 cut(s)	224, 240, 278
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	61, 88, 120, 241, 334, 375, 445
Lsp1109I	GCAGC	1 cut(s)	639
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	96, 652
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	7 cut(s)	220, 383, 412, 415, 421, 477, 535
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	6 cut(s)	44, 59, 197, 256, 266, 489
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	7 cut(s)	79, 327, 339, 399, 538, 569, 582
MseI	TTAA	5 cut(s)	200, 213, 519, 558, 638
MslI	CAYNNNNRTG	2 cut(s)	187, 241
MspI	CCGG	3 cut(s)	228, 321, 642
MspR9I	CCNGG	2 cut(s)	76, 321
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	358
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	3 cut(s)	224, 240, 278
NlaIV	GGNNCC	1 cut(s)	549
NspI	RCATGY	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	187
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	125, 305
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	629
PshBI	ATTAAT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	549
RsaI	GTAC	2 cut(s)	13, 154
RsaNI	GTAC	2 cut(s)	12, 153
RseI	CAYNNNNRTG	2 cut(s)	187, 241
SaqAI	TTAA	5 cut(s)	200, 213, 519, 558, 638
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	76, 321
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	187, 241
Sse9I	AATT	6 cut(s)	44, 59, 197, 256, 266, 489
SspI	AATATT	2 cut(s)	217, 517
SspMI	CTAG	2 cut(s)	96, 652
StyD4I	CCNGG	2 cut(s)	74, 319
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	424, 449
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	1 cut(s)	426
TasI	AATT	6 cut(s)	44, 59, 197, 256, 266, 489
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	125, 305
Tru1I	TTAA	5 cut(s)	200, 213, 519, 558, 638
Tru9I	TTAA	5 cut(s)	200, 213, 519, 558, 638
TscAI	CASTG	2 cut(s)	135, 454
TseI	GCWGC	1 cut(s)	627
TspDTI	ATGAA	5 cut(s)	161, 209, 309, 384, 513
TspGWI	ACGGA	2 cut(s)	175, 542
TspRI	CASTG	2 cut(s)	135, 454
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	2 cut(s)	44, 256
XceI	RCATGY	1 cut(s)	278
XspI	CTAG	2 cut(s)	96, 652
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.