RchiOBHm_Chr2g0169321

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005135
Physical Location & Seq
Forward (+)
83517943 .. 83519146
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGATAATCAAAACAGTCGATGAATGCTCGTATTTTCCGACCATGACGATCAAAGGAGGCACAAGCCAGGCCTGTGCTGCATGCAAATACCAGAGACGACGGTGCACCAAAGACTGCGATCTCGCCCCTCATTTTCCGGCCGACCAGCCCAAAATGTTCCAGAACGCTCACCGCCTCTACGGCGTTTCAAACATTATGAAGATCCTGAAGCAGACTCACCCGGAGCAGAAAGAAGAGGCGATGCGATCCATTATCTACGAATCCAACATGAGAGCCAAGTTTCCCGTCACCGGGTGCATGGGAATCATCAACCAATTGACATTCCAACTCCAGCAAGCCTTCGATGAGCTCCGGTACGTCCGGTCCCATCTCGCCATCTGCCGGGACCAGTGCCAGTACCAGTACAATTCACCTTCGTGTCCATCTTCTCAGTTGCAATTAGGGATTCAAACAAACGACCACGAGGCGCTGCAGCTCTACCAGCAGCAGTACCAATATCATCAGTATAACTCTGCCGCCGGTAGCAGCGCCGGTGGTGGTGGGATGTCGTTGATGGCGAACGAGTATCTGGCGAATGGGATTAATGGGGTTTACATTGATGACAATGATAGTGTGGTAAAACCTCTTAGGGTTCAGCAGTTTTATTATGGGAACAATAATGTTGATGCTGTGGCTGTTCAACATAATTTGATCACATCCCAAGGGTTTCCTATTCAACAAGAAATGGATGTTCCTCATGATTATGATGACATTCCATTTGATACAATTGCTGATGATCGTCAATCGTATATCGATTCTAAGGAAGCCTGTGAATCGAGTGCCGAGTCAGCCTTCAAGGGTACTACCACGCAGTCGTTAGAACATGTCTCCCAGAATGACCTCAAGAGTGCAGCAGCATGCTTCAGTCTAACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

305

Amino Acids

34.25

Weight (kDa)

5.43

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 24 - 120 1.9e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 172, 516
AclWI GGATC 2 cut(s) 196, 240
AcoI YGGCCR 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 227, 886
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 5 cut(s) 356, 398, 404, 491, 841
AfiI CCNNNNNNNGG 3 cut(s) 290, 291, 381
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 5 cut(s) 189, 449, 680, 716, 835
AjnI CCWGG 1 cut(s) 66
AleI CACNNNNGTG 1 cut(s) 415
AluBI AGCT 3 cut(s) 349, 475, 915
AluI AGCT 3 cut(s) 349, 475, 915
Alw21I GWGCWC 2 cut(s) 107, 351
Alw26I GTCTC 2 cut(s) 88, 871
Alw44I GTGCAC 1 cut(s) 103
AlwI GGATC 2 cut(s) 196, 240
AoxI GGCC 2 cut(s) 69, 138
ApaLI GTGCAC 1 cut(s) 103
ApeKI GCWGC 7 cut(s) 77, 469, 472, 484, 525, 890, 893
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
AseI ATTAAT 1 cut(s) 582
AspLEI GCGC 2 cut(s) 469, 530
AspS9I GGNCC 2 cut(s) 363, 385
AsuC2I CCSGG 3 cut(s) 221, 292, 383
AsuHPI GGTGA 4 cut(s) 161, 209, 280, 402
AvaII GGWCC 2 cut(s) 363, 385
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 351
BauI CACGAG 1 cut(s) 461
Bbv12I GWGCWC 2 cut(s) 107, 351
BbvI GCAGC 7 cut(s) 64, 456, 484, 496, 537, 902, 905
BccI CCATC 4 cut(s) 375, 383, 430, 547
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 3 cut(s) 221, 292, 383
BcoDI GTCTC 2 cut(s) 88, 871
BfaI CTAG 1 cut(s) 916
BfmI CTRYAG 1 cut(s) 470
BfoI RGCGCY 2 cut(s) 470, 531
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 8 cut(s) 78, 470, 473, 485, 516, 526, 891, 894
BlsI GCNGC 8 cut(s) 79, 471, 474, 486, 517, 527, 892, 895
Bme1390I CCNGG 4 cut(s) 68, 221, 292, 383
Bme18I GGWCC 2 cut(s) 363, 385
BmgT120I GGNCC 2 cut(s) 363, 385
BmiI GGNNCC 2 cut(s) 365, 386
BmrFI CCNGG 4 cut(s) 68, 221, 292, 383
BmsI GCATC 2 cut(s) 231, 655
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 866
BpuMI CCSGG 3 cut(s) 221, 292, 383
Bsa29I ATCGAT 1 cut(s) 792
BsaJI CCNNGG 1 cut(s) 700
BsaWI WCCGGW 2 cut(s) 351, 360
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 291, 381
Bse118I RCCGGY 2 cut(s) 518, 530
Bse1I ACTGG 3 cut(s) 388, 394, 400
BseBI CCWGG 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 1 cut(s) 700
BseGI GGATG 3 cut(s) 549, 695, 733
BseLI CCNNNNNNNGG 3 cut(s) 290, 291, 381
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 3 cut(s) 388, 394, 400
BseSI GKGCMC 1 cut(s) 107
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 7 cut(s) 64, 456, 484, 496, 537, 902, 905
BsgI GTGCAG 1 cut(s) 909
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 71, 140
BshVI ATCGAT 1 cut(s) 792
BsiEI CGRYCG 1 cut(s) 141
BsiHKAI GWGCWC 2 cut(s) 107, 351
BsiSI CCGG 8 cut(s) 137, 221, 291, 352, 361, 382, 519, 531
BslFI GGGAC 2 cut(s) 349, 398
BslI CCNNNNNNNGG 3 cut(s) 290, 291, 381
BsmAI GTCTC 2 cut(s) 88, 871
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 349, 398
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 2 cut(s) 71, 140
Bsp1286I GDGCHC 2 cut(s) 107, 351
Bsp143I GATC 6 cut(s) 48, 118, 201, 245, 690, 775
BspACI CCGC 2 cut(s) 172, 516
BspANI GGCC 2 cut(s) 71, 140
BspCNI CTCAG 1 cut(s) 442
BspDI ATCGAT 1 cut(s) 792
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 365, 386
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 2 cut(s) 196, 240
BsrFI RCCGGY 2 cut(s) 518, 530
BsrI ACTGG 3 cut(s) 388, 394, 400
BssAI RCCGGY 2 cut(s) 518, 530
BssECI CCNNGG 1 cut(s) 700
BssMI GATC 6 cut(s) 48, 118, 201, 245, 690, 775
BssSI CACGAG 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 700
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 16, 102
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 82, 336, 898
BstDEI CTNAG 3 cut(s) 429, 626, 798
BstF5I GGATG 3 cut(s) 549, 695, 733
BstH2I RGCGCY 2 cut(s) 470, 531
BstHHI GCGC 2 cut(s) 469, 530
BstKTI GATC 6 cut(s) 51, 121, 204, 248, 693, 778
BstMAI GTCTC 2 cut(s) 88, 871
BstMBI GATC 6 cut(s) 48, 118, 201, 245, 690, 775
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 4 cut(s) 77, 180, 481, 827
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 3 cut(s) 84, 866, 900
BstSCI CCNGG 4 cut(s) 66, 219, 290, 381
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 7 cut(s) 64, 456, 484, 496, 537, 902, 905
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BstZI CGGCCG 1 cut(s) 138
Bsu15I ATCGAT 1 cut(s) 792
BsuRI GGCC 2 cut(s) 71, 140
BsuTUI ATCGAT 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 3 cut(s) 549, 695, 733
BtsIMutI CAGTG 1 cut(s) 395
Cac8I GCNNGC 3 cut(s) 82, 336, 898
CciI TCATGA 1 cut(s) 736
CfoI GCGC 2 cut(s) 469, 530
Cfr10I RCCGGY 2 cut(s) 518, 530
Cfr13I GGNCC 2 cut(s) 363, 385
ClaI ATCGAT 1 cut(s) 792
Csp6I GTAC 5 cut(s) 355, 397, 403, 490, 840
CviAII CATG 7 cut(s) 43, 81, 268, 298, 737, 863, 897
CviQI GTAC 5 cut(s) 355, 397, 403, 490, 840
DdeI CTNAG 3 cut(s) 429, 626, 798
DpnI GATC 6 cut(s) 50, 120, 203, 247, 692, 777
DpnII GATC 6 cut(s) 48, 118, 201, 245, 690, 775
DraIII CACNNNGTG 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 349
EclXI CGGCCG 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 700
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 363, 385
Eco52I CGGCCG 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 2 cut(s) 227, 886
EcoICRI GAGCTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 700
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 7 cut(s) 46, 84, 271, 301, 740, 866, 900
FaqI GGGAC 2 cut(s) 349, 398
FatI CATG 7 cut(s) 42, 80, 267, 297, 736, 862, 896
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 8 cut(s) 78, 470, 473, 485, 516, 526, 891, 894
FokI GGATG 3 cut(s) 556, 682, 740
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 8 cut(s) 78, 470, 473, 485, 516, 526, 891, 894
FspBI CTAG 1 cut(s) 916
GlaI GCGC 2 cut(s) 468, 529
GluI GCNGC 8 cut(s) 78, 470, 473, 485, 516, 526, 891, 894
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 2 cut(s) 470, 531
HaeIII GGCC 2 cut(s) 71, 140
HapII CCGG 8 cut(s) 137, 221, 291, 352, 361, 382, 519, 531
HhaI GCGC 2 cut(s) 469, 530
Hin1II CATG 7 cut(s) 46, 84, 271, 301, 740, 866, 900
Hin6I GCGC 2 cut(s) 467, 528
HinP1I GCGC 2 cut(s) 467, 528
HinfI GANTC 7 cut(s) 214, 260, 303, 445, 794, 812, 824
HpaII CCGG 8 cut(s) 137, 221, 291, 352, 361, 382, 519, 531
HphI GGTGA 4 cut(s) 161, 209, 280, 402
Hpy166II GTNNAC 2 cut(s) 105, 592
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 4 cut(s) 160, 205, 737, 883
Hpy8I GTNNAC 2 cut(s) 105, 592
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 3 cut(s) 349, 423, 841
HpyCH4III ACNGT 2 cut(s) 16, 102
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 7 cut(s) 80, 84, 105, 297, 436, 472, 890
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 180, 481, 827
HpyF3I CTNAG 3 cut(s) 429, 626, 798
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 7 cut(s) 46, 84, 271, 301, 740, 866, 900
HspAI GCGC 2 cut(s) 467, 528
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 6 cut(s) 48, 118, 201, 245, 690, 775
LmnI GCTCC 2 cut(s) 223, 354
Lsp1109I GCAGC 7 cut(s) 64, 456, 484, 496, 537, 902, 905
LweI GCATC 2 cut(s) 231, 655
MaeI CTAG 1 cut(s) 916
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 286
MalI GATC 6 cut(s) 50, 120, 203, 247, 692, 777
MboI GATC 6 cut(s) 48, 118, 201, 245, 690, 775
MboII GAAGA 3 cut(s) 211, 245, 417
MfeI CAATTG 2 cut(s) 314, 765
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 2 cut(s) 107, 351
MluCI AATT 5 cut(s) 314, 406, 437, 685, 765
MlyI GAGTC 2 cut(s) 208, 833
MmeI TCCRAC 3 cut(s) 62, 288, 349
MnlI CCTC 8 cut(s) 50, 138, 185, 229, 457, 633, 744, 890
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 2 cut(s) 415, 741
MspI CCGG 8 cut(s) 137, 221, 291, 352, 361, 382, 519, 531
MspR9I CCNGG 4 cut(s) 68, 221, 292, 383
MunI CAATTG 2 cut(s) 314, 765
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 4 cut(s) 77, 180, 481, 827
NciI CCSGG 3 cut(s) 221, 292, 383
NdeII GATC 6 cut(s) 48, 118, 201, 245, 690, 775
NlaIII CATG 7 cut(s) 46, 84, 271, 301, 740, 866, 900
NlaIV GGNNCC 2 cut(s) 365, 386
NmeAIII GCCGAG 1 cut(s) 847
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 3 cut(s) 84, 866, 900
OliI CACNNNNGTG 1 cut(s) 415
PaeI GCATGC 2 cut(s) 84, 900
PagI TCATGA 1 cut(s) 736
PceI AGGCCT 1 cut(s) 71
PciI ACATGT 1 cut(s) 862
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 554
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 5 cut(s) 260, 303, 445, 794, 812
PkrI GCNGC 8 cut(s) 79, 471, 474, 486, 517, 527, 892, 895
PleI GAGTC 2 cut(s) 208, 832
PpsI GAGTC 2 cut(s) 208, 832
PscI ACATGT 1 cut(s) 862
PshBI ATTAAT 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 365, 386
PspPI GGNCC 2 cut(s) 363, 385
PstI CTGCAG 1 cut(s) 474
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 5 cut(s) 356, 398, 404, 491, 841
RsaNI GTAC 5 cut(s) 355, 397, 403, 490, 840
RseI CAYNNNNRTG 2 cut(s) 415, 741
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 8 cut(s) 78, 470, 473, 485, 516, 526, 891, 894
Sau3AI GATC 6 cut(s) 48, 118, 201, 245, 690, 775
Sau96I GGNCC 2 cut(s) 363, 385
SchI GAGTC 2 cut(s) 208, 833
ScrFI CCNGG 4 cut(s) 68, 221, 292, 383
SduI GDGCHC 2 cut(s) 107, 351
SetI ASST 7 cut(s) 351, 360, 415, 477, 625, 882, 917
SfaNI GCATC 2 cut(s) 231, 655
SfcI CTRYAG 1 cut(s) 470
SgrAI CRCCGGYG 1 cut(s) 530
SinI GGWCC 2 cut(s) 363, 385
SmiMI CAYNNNNRTG 2 cut(s) 415, 741
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
SphI GCATGC 2 cut(s) 84, 900
Sse9I AATT 5 cut(s) 314, 406, 437, 685, 765
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 2 cut(s) 172, 516
SspMI CTAG 1 cut(s) 916
SstI GAGCTC 1 cut(s) 351
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 4 cut(s) 66, 219, 290, 381
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 2 cut(s) 16, 102
TaiI ACGT 1 cut(s) 360
TaqI TCGA 4 cut(s) 18, 342, 792, 815
TasI AATT 5 cut(s) 314, 406, 437, 685, 765
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 5 cut(s) 260, 303, 445, 794, 812
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 395
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 7 cut(s) 77, 469, 472, 484, 525, 890, 893
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 36, 212
TspRI CASTG 1 cut(s) 395
VneI GTGCAC 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 363, 385
VspI ATTAAT 1 cut(s) 582
XceI RCATGY 3 cut(s) 84, 866, 900
XspI CTAG 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.