Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Reverse (-)

84007739 .. 84008867

Gene Structure 1129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAAAGATTCTTACCATCAAGACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAAGGTTTTATACTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAATTTTTTGGCTATTTGGCTTCTACAAAAGACATTAAAAAGTTACTTGCACACTTGACGAAAACTTGCATAGCCCATGGAGGAACACTTACCCCATTGTATGGATACATTTATCCATGCGAAAATGTGATGACTCAAAAAACATCAAAAGATCATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTAGTATCTCTCAGTGGTCACTTGTTTGATCAATTTCTGATAAATGAGGCCTTAAATATTATTGAACCTGCAAGTGGATCCTTCCACTTAGTGAAGTGTCAAGTTGGTCCGAGTTCTCATGCTATGTCATACTCAGAACTCGAAGTGAGTAGGCCTCAAGTGCGTTTCGATCATATGAGACTTACGTCCTCTTTCTCTATCTACCTAATTAGCTGTCTCTTTAGAATTACTTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

186

Amino Acids

20.95

Weight (kDa)

7.69

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saccharop_dh_N	PF04455	108 - 159	4.7e-12	LOR/SDH bifunctional enzyme conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	233
AclWI	GGATC	2 cut(s)	393, 406
AcsI	RAATTY	2 cut(s)	74, 134
AdeI	CACNNNGTG	1 cut(s)	412
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	233, 395
AgsI	TTSAA	1 cut(s)	386
AluBI	AGCT	2 cut(s)	53, 534
AluI	AGCT	2 cut(s)	53, 534
Alw26I	GTCTC	3 cut(s)	114, 493, 542
AlwI	GGATC	2 cut(s)	393, 406
AoxI	GGCC	2 cut(s)	369, 473
ApoI	RAATTY	2 cut(s)	74, 134
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	44, 287
AvaII	GGWCC	1 cut(s)	428
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BamHI	GGATCC	1 cut(s)	398
BccI	CCATC	2 cut(s)	24, 29
BciVI	GTATCC	1 cut(s)	230
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	3 cut(s)	114, 493, 542
BfaI	CTAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	400
BoxI	GACNNNNGTC	1 cut(s)	505
BplI	GAGNNNNNCTC	2 cut(s)	460, 492
BpuEI	CTTGAG	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 395
Bse1I	ACTGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	233, 395
BseMII	CTCAG	2 cut(s)	346, 468
BseNI	ACTGG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	371, 475
BslI	CCNNNNNNNGG	2 cut(s)	233, 395
BsmAI	GTCTC	3 cut(s)	114, 493, 542
BsnI	GGCC	2 cut(s)	371, 475
Bsp143I	GATC	4 cut(s)	283, 349, 398, 490
Bsp19I	CCATGG	1 cut(s)	208
BspANI	GGCC	2 cut(s)	371, 475
BspCNI	CTCAG	2 cut(s)	345, 467
BspLI	GGNNCC	1 cut(s)	400
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	2 cut(s)	393, 406
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	4 cut(s)	283, 349, 398, 490
BssT1I	CCWWGG	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	332, 409, 454
BstDSI	CCRYGG	1 cut(s)	208
BstKTI	GATC	4 cut(s)	286, 352, 401, 493
BstMAI	GTCTC	3 cut(s)	114, 493, 542
BstMBI	GATC	4 cut(s)	283, 349, 398, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstPAI	GACNNNNGTC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	371, 475
BtgI	CCRYGG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	5 cut(s)	25, 209, 249, 287, 440
CviJI	RGCY	8 cut(s)	53, 104, 144, 152, 206, 371, 475, 534
CviKI_1	RGCY	8 cut(s)	53, 104, 144, 152, 206, 371, 475, 534
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	332, 409, 454
DpnI	GATC	4 cut(s)	285, 351, 400, 492
DpnII	GATC	4 cut(s)	283, 349, 398, 490
DraIII	CACNNNGTG	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	208
Eco147I	AGGCCT	2 cut(s)	371, 475
Eco47I	GGWCC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	5 cut(s)	28, 212, 252, 290, 443
FatI	CATG	5 cut(s)	24, 208, 248, 286, 439
FauNDI	CATATG	1 cut(s)	495
FbaI	TGATCA	1 cut(s)	349
FspBI	CTAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	371, 475
Hin1II	CATG	5 cut(s)	28, 212, 252, 290, 443
HinfI	GANTC	2 cut(s)	8, 265
HphI	GGTGA	2 cut(s)	44, 287
Hpy166II	GTNNAC	2 cut(s)	58, 315
Hpy188I	TCNGA	4 cut(s)	133, 360, 432, 457
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	58, 315
HpyAV	CCTTC	2 cut(s)	23, 412
HpyCH4IV	ACGT	2 cut(s)	320, 506
HpyCH4V	TGCA	4 cut(s)	80, 182, 201, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	3 cut(s)	332, 409, 454
HpySE526I	ACGT	2 cut(s)	320, 506
Hsp92II	CATG	5 cut(s)	28, 212, 252, 290, 443
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	283, 349, 398, 490
LpnPI	CCDG	2 cut(s)	81, 402
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	320, 506
MaeIII	GTNAC	4 cut(s)	174, 293, 338, 554
MalI	GATC	4 cut(s)	285, 351, 400, 492
MboI	GATC	4 cut(s)	283, 349, 398, 490
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	5 cut(s)	74, 134, 353, 528, 546
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	4 cut(s)	206, 361, 486, 520
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	3 cut(s)	168, 303, 374
MspA1I	CMGCKG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	481
NcoI	CCATGG	1 cut(s)	208
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	4 cut(s)	283, 349, 398, 490
NlaIII	CATG	5 cut(s)	28, 212, 252, 290, 443
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	2 cut(s)	293, 338
PceI	AGGCCT	2 cut(s)	371, 475
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	233
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	3 cut(s)	168, 303, 374
Sau3AI	GATC	4 cut(s)	283, 349, 398, 490
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	259
SetI	ASST	8 cut(s)	34, 55, 89, 323, 391, 509, 528, 536
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
Sse9I	AATT	5 cut(s)	74, 134, 353, 528, 546
SseBI	AGGCCT	2 cut(s)	371, 475
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	291
StuI	AGGCCT	2 cut(s)	371, 475
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	2 cut(s)	323, 509
TaqI	TCGA	2 cut(s)	462, 489
TasI	AATT	5 cut(s)	74, 134, 353, 528, 546
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	168, 303, 374
Tru9I	TTAA	3 cut(s)	168, 303, 374
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	293, 338
Tsp45I	GTSAC	2 cut(s)	293, 338
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	2 cut(s)	74, 134
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.