Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

20857957 .. 20860320

Gene Structure 2364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCTTCTTCTTCTTCTTCTGTTTCACCCAAACCAGCAGACCCACCTCCCATTTTCGACGACGACGGCCAGGAATTGAGCATCTGGGAAAAGAAGCAACACCAACAATTCTCCACCTACAAGCGAAGAGCTCCAAACCCACCAAGGGGTGGGAGTGAGTGTAGTTGGGATAACCAGTTGGCAAAGACACCCATTTCGGATGTCGACTCTCCCAAGCCTGAATCGACAGTATTGGGAAAGACAGTGACCAAGAACAAGAAGAGAAGCTATGCTCAGTACCATCTAGACTTGGGTCAGTCTGACTTTCTTCTGCACACTTGTTCCGCATGTGGCGTCATGTATGTGACTGGAGATGAAGAGGATGAGAAGGCTCACAAGGGATTTCACAATGACTATACCCGCGGAATACAATTCAAGGGTTGGTGCAATGAGAGGGTTGTTCATTCGCTTAAAGTGGGAGGAGGTCGGATTCTTTTGGTGTTGGATGGTGATCCTCCTGCTCAGAGGAACAAGGTTGAGAAAGTTGTGACAATGATGGAGACTGAGCTTGGCAGTGGGTGGATTCTGCCCAAGTTGTTTAAGGTGTATCTGTTTGTTTTGTCCGCAAGAATTGTAGGCTGTCTGGTTGCCGAACCTATAACAAAAGCACACAAAGTCCTATCTTGTGCAGTTGATGGAAGCTCAAGTTTTGCTAGTACGGCAACAAAGAAAACAAAGTTAACTACTCTCCAGTTTGGGGAAATCAAATTTCACAGGGAAGTCATTAGAAAAGCCCCTTCTGCTCCTGAACCATTGAATGAGTGTTTCACTGGTGCTATCCTTTGTGAAAAGGAAGCAGTACCCGCTGTCTGTGGCATTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAACACATAGCCACCCACTTATTGGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTCCTTGAGCACTCTCAGTTGGCATTCTCTCCACTAACATCGGCTGGAAACGCATTGGTATCAAATTATATTGGCAGTGGACATTTCTTGGTGTACAACACAAACAATGTGGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

365

Amino Acids

40.16

Weight (kDa)

9.04

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	102 - 140	1.2e-14	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	290 - 358	3e-25	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	179, 943
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	432
AciI	CCGC	5 cut(s)	354, 430, 432, 633, 873
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	4 cut(s)	308, 727, 870, 1073
AfiI	CCNNNNNNNGG	5 cut(s)	175, 176, 179, 766, 943
AgsI	TTSAA	3 cut(s)	28, 445, 826
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	5 cut(s)	161, 297, 577, 711, 911
AluI	AGCT	5 cut(s)	161, 297, 577, 711, 911
Alw21I	GWGCWC	2 cut(s)	163, 990
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	515
AoxI	GGCC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	776
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
Asp700I	GAANNNNTTC	1 cut(s)	962
AsuHPI	GGTGA	2 cut(s)	48, 530
AxyI	CCTNAGG	1 cut(s)	953
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	2 cut(s)	163, 990
BccI	CCATC	4 cut(s)	318, 509, 559, 698
BceAI	ACGGC	2 cut(s)	112, 744
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	2 cut(s)	314, 723
Bme1390I	CCNGG	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	120, 937
BoxI	GACNNNNGTC	1 cut(s)	321
BpmI	CTGGAG	3 cut(s)	399, 743, 891
BpuEI	CTTGAG	2 cut(s)	697, 1004
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	173, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 176, 179, 766, 943
Bse1I	ACTGG	4 cut(s)	205, 382, 760, 844
Bse21I	CCTNAGG	1 cut(s)	953
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	173, 430
BseGI	GGATG	4 cut(s)	235, 397, 520, 952
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	5 cut(s)	175, 176, 179, 766, 943
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	5 cut(s)	317, 545, 564, 944, 1007
BseNI	ACTGG	4 cut(s)	205, 382, 760, 844
BseRI	GAGGAG	1 cut(s)	504
BsgI	GTGCAG	2 cut(s)	326, 717
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	163, 990
BslI	CCNNNNNNNGG	5 cut(s)	175, 176, 179, 766, 943
BsmAI	GTCTC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	1001
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	163, 990
Bsp1407I	TGTACA	1 cut(s)	1071
Bsp143I	GATC	2 cut(s)	12, 520
BspACI	CCGC	5 cut(s)	354, 430, 432, 633, 873
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	5 cut(s)	316, 544, 565, 945, 1006
BspFNI	CGCG	1 cut(s)	432
BspPI	GGATC	1 cut(s)	515
BspQI	GCTCTTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	1071
BsrI	ACTGG	4 cut(s)	205, 382, 760, 844
BssECI	CCNNGG	2 cut(s)	173, 430
BssMI	GATC	2 cut(s)	12, 520
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	259, 274
Bst6I	CTCTTC	4 cut(s)	40, 151, 284, 381
BstACI	GRCGYC	1 cut(s)	363
BstAUI	TGTACA	1 cut(s)	1071
BstDEI	CTNAG	5 cut(s)	303, 531, 573, 953, 993
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	4 cut(s)	235, 397, 520, 952
BstFNI	CGCG	1 cut(s)	432
BstKTI	GATC	2 cut(s)	15, 523
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	2 cut(s)	12, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	728, 809, 872, 1028
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	360
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	432
Bsu36I	CCTNAGG	1 cut(s)	953
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	4 cut(s)	235, 397, 520, 952
BtsI	GCAGTG	2 cut(s)	589, 1060
BtsIMutI	CAGTG	5 cut(s)	22, 279, 589, 837, 1060
Cfr42I	CCGCGG	1 cut(s)	433
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	4 cut(s)	307, 726, 869, 1072
CspCI	CAANNNNNGTGG	1 cut(s)	1068
CviAII	CATG	3 cut(s)	357, 367, 970
CviQI	GTAC	4 cut(s)	307, 726, 869, 1072
DdeI	CTNAG	5 cut(s)	303, 531, 573, 953, 993
DpnI	GATC	2 cut(s)	14, 522
DpnII	GATC	2 cut(s)	12, 520
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	4 cut(s)	40, 151, 284, 381
EarI	CTCTTC	4 cut(s)	40, 151, 284, 381
Ecl136II	GAGCTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
Eco81I	CCTNAGG	1 cut(s)	953
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	3 cut(s)	360, 370, 973
FatI	CATG	3 cut(s)	356, 366, 969
FauI	CCCGC	2 cut(s)	437, 880
FblI	GTMKAC	1 cut(s)	234
FokI	GGATG	4 cut(s)	242, 404, 527, 959
FriOI	GRGCYC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	314, 723
GsuI	CTGGAG	3 cut(s)	399, 743, 891
HaeIII	GGCC	1 cut(s)	99
HgaI	GACGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	360, 370, 973
HincII	GTYRAC	2 cut(s)	235, 750
HindII	GTYRAC	2 cut(s)	235, 750
HinfI	GANTC	4 cut(s)	236, 251, 499, 592
HpaI	GTTAAC	1 cut(s)	750
HphI	GGTGA	2 cut(s)	48, 530
Hpy166II	GTNNAC	4 cut(s)	235, 750, 1058, 1072
Hpy188I	TCNGA	4 cut(s)	229, 331, 498, 534
Hpy188III	TCNNGA	2 cut(s)	314, 815
Hpy8I	GTNNAC	4 cut(s)	235, 750, 1058, 1072
Hpy99I	CGWCG	3 cut(s)	92, 95, 98
HpyAV	CCTTC	3 cut(s)	31, 391, 816
HpyCH4III	ACNGT	2 cut(s)	259, 274
HpyCH4V	TGCA	5 cut(s)	4, 343, 456, 698, 969
HpyF10VI	GCNNNNNNNGC	4 cut(s)	728, 809, 872, 1028
HpyF3I	CTNAG	5 cut(s)	303, 531, 573, 953, 993
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	360, 370, 973
KspAI	GTTAAC	1 cut(s)	750
KspI	CCGCGG	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	12, 520
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	166, 817
LweI	GCATC	2 cut(s)	120, 937
MaeI	CTAG	2 cut(s)	314, 723
MaeIII	GTNAC	4 cut(s)	274, 373, 556, 901
MalI	GATC	2 cut(s)	14, 522
MboI	GATC	2 cut(s)	12, 520
MhlI	GDGCHC	2 cut(s)	163, 990
MluCI	AATT	6 cut(s)	104, 137, 440, 639, 776, 1042
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	476, 492
MnlI	CCTC	9 cut(s)	43, 87, 382, 456, 482, 485, 528, 534, 948
MroXI	GAANNNNTTC	1 cut(s)	962
MseI	TTAA	3 cut(s)	480, 609, 749
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	2 cut(s)	432, 875
MspR9I	CCNGG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	1001
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	4 cut(s)	728, 809, 872, 1028
NdeII	GATC	2 cut(s)	12, 520
NlaIII	CATG	3 cut(s)	360, 370, 973
NmuCI	GTSAC	4 cut(s)	274, 373, 556, 901
NspI	RCATGY	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	151
PctI	GAATGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	962
PfeI	GAWTC	3 cut(s)	251, 499, 592
PflMI	CCANNNNNTGG	2 cut(s)	179, 943
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PshAI	GACNNNNGTC	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
RsaI	GTAC	4 cut(s)	308, 727, 870, 1073
RsaNI	GTAC	4 cut(s)	307, 726, 869, 1072
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	163
SacII	CCGCGG	1 cut(s)	433
SalI	GTCGAC	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	480, 609, 749
Sau3AI	GATC	2 cut(s)	12, 520
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	163, 990
SfaNI	GCATC	2 cut(s)	120, 937
Sfr303I	CCGCGG	1 cut(s)	433
SgrBI	CCGCGG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	712, 983
SmoI	CTYRAG	2 cut(s)	712, 983
Sse9I	AATT	6 cut(s)	104, 137, 440, 639, 776, 1042
SsiI	CCGC	5 cut(s)	354, 430, 432, 633, 873
SspMI	CTAG	2 cut(s)	314, 723
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	259, 274
TaqI	TCGA	3 cut(s)	87, 234, 254
TasI	AATT	6 cut(s)	104, 137, 440, 639, 776, 1042
TatI	WGTACW	1 cut(s)	1071
TfiI	GAWTC	3 cut(s)	251, 499, 592
Tru1I	TTAA	3 cut(s)	480, 609, 749
Tru9I	TTAA	3 cut(s)	480, 609, 749
TscAI	CASTG	5 cut(s)	22, 279, 589, 844, 1060
TseFI	GTSAC	4 cut(s)	274, 373, 556, 901
Tsp45I	GTSAC	4 cut(s)	274, 373, 556, 901
TspDTI	ATGAA	2 cut(s)	399, 461
TspRI	CASTG	5 cut(s)	22, 279, 589, 844, 1060
Van91I	CCANNNNNTGG	2 cut(s)	179, 943
XapI	RAATTY	1 cut(s)	776
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	962
XspI	CTAG	2 cut(s)	314, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.