RchiOBHm_Chr1g0333641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002394
Physical Location & Seq
Reverse (-)
25758151 .. 25766374
8224 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 5187 bp
ATGTCGACGACTGAGAAGCACTGGTTGCAGATCTTCGAGGGAAAGCAATGGATTATCAACAAAGCCAAGCAGCAGGCCTTCCTCTTCGACCAGGACCTCGCCTCCAAACTCATCATTGCCGGAATTGCCCCTCCTCCTTCTCTTTTCTCCTCCCACCCCGACGTGTTGAACCATCATGAGCTGATTTCAGAAGTTCCACTCCCTCGCACACGCCGTGTGATCCCTTTCACTGGTAGTCATTGCTGTGGGTTCGACAAGCCAGTTGCTACAGCTCACTACGGGCAGCTAACAAATGATTTGTGCACGGAACATTGTGGGGTAAAGAAAGTTTTTGATGTAGGAGGCAATGTATTGGATTTGCCACCGTGCCCAATCAGTAATGGTGGATGTGCCTCCAATGGTGTCACTCAACATCATAGAGAAGAGGATCCTAGTGTTACGTCTCCTGAAGATGAGAGGGATGAAAGAGTCTCAGACGTTTACCATGACTCAGCTTTAACACCGGCTAGAGGTACAGGAGAGGAGGTATCAATTTTGCCACAGGGCCACATTAGTGATGCTGGGTGTGCCTTTGATGGTGTTTTACAATATCACAAAGAAGAAAATCCTGGTGGTACGTCTCCTGAAGATCAGGGGGATACAAGAATGTTAGACATTTACCTCAACCCAGCTCTTTCACTGGCTAGAGTTCAAAGATCTAAGTCAAGACAAAGGGCTCTGGCAATTCGAAACAGTACTCAAAAAAGCTGTTCACAGGATAAGGGCAATGTTGATGGTTATGCTGGTGAAACTATCAAGTGTCTGATATCTACCCCACAGTCTGAAAATGTCGATGAATTGAATGAGAATCATTCTGAAGTGGAAAAACCAAAAATAGGAGAATTTCAAAGCAAGGAAAAAGGTTCTGACATCTACTCTGGTAGAATTACTAGATCTAGAAGCTCTGGCCATCAGGAGAACTCTTTAGATGTCAGTGGCTCTCCATGTATTTACAAGTCAAGTGATGGTATAGCTGTTGATTCTATTGGTACATTGACACATCTGTCTAACCAAGTAATTCACCCACTGGAATTGGTTAGCTACTGTCATATAACAAATGACGGTTGTCGAGAGGGGGAATTAAAGCTGGGAGACTACTCAAGCAAGAAGCGAACCGTTGAGAAAGATTCTATGTGTGCAAACTTGGAAAGAGATGAACACACTCCAAAGGCTTTACAAGAGTTCAAAGGTCCTTCAATTTCTAAGGATGTTGCTGGGAACTCAATTGTCTGTAGGAGTCCTGTTGAAGAAACACATCTAAATGAGGATCATCACATGGTAAACACGTCCAAATCTTCACCTGAGGCACAGAAGAAAGAGGGCGAAATGGGTTTAGAAGGGGTGGGCAGTAGTCCAAATGCTCTGTTTACTTTTTTGCATGAAGAAAAAGAAGCATCAGTATTCCCATTTCTGATCAAGCAGGCTGCTGGTCATCCTCAAGATTCTTTGCTTGAGGAAACAGGAGTAGCACATCCAACTAGCACTAACATTGATGAAGGAAGCCAATGCTTAAAAGAGAACCCAGTTTCTCTTCTTCCGGACAATTTAAGACTAGAAAATGCTGAAGATTTATCTTGTGCTGGAAAAACCATGCAGGCACAGAGATTTGATTTTGGAGGGCCCAGCAAATTTTTAGAATTGTCATGTGGTGCTCCACATGTTGAATGCTCACAGTCTGAAAATGTTGGTGAATTGAATGATAATCATTCTGAAGTGGAAAAACAAAAGATAGGAGAATTTCAAATCAAGGAAGAAGGCACTGACATCTACTCTGGTAGAATTACTAGATCTAGAAGCTCTGGCCATCAGGAGAACTCTTTAAATGCCAGTGGCTCGCCCTGCATTGGCAGGACAAGTAGTGGTATAGCAGTTGATATTGATACTGTGGAAGAGTCCTGTTTAAAAGGACTTTCTACTCCTGCTAGTAAGAAGGGGATGCAGGGCAGTTCATCAGTAGAAATGCCTCTTCCCTTCATGCACGGGGAAAAGAAACTAGAAGAAGGAATGAGCATCACTACCCGTGAAAACTGTAACTCATCCTTGGAAATGGATTTTCTGGGCAATTGTGAAGTTTCAGCCAAAGAAATGGATGTCCAGAGCGGTTTAGTTGAAGCCCTTGAAGAGGAGTTCAGTAAATCTAGAAGAGCGTCACATGACAATGTGATCTCATCAGTAAAAGAATCATTTGATGCTTATACGGATGCAGTTCCCAAAACTTTGCTAGAAAGTGGGAGAACTCCGAAACAGAAATGTTCTATGATAGATGATCAAACTCCCTTGCGAGTAGACTGGGATCGATTGGTTTGTAGCCCGATAAAAGAAGTAAAGGGGTCTAATTTGTCTACTGCTAATGCTGCAATACCAACGGAGTTGGTGTCAGAAGACTGTGCAGTGGATTCTAATGCCCTTTGTAATCCTCATAAATCAACAGATGTTGATTTTGCTATGGTGTCTGGGCCTGGTTCTCATAGAATCCTAGATGCAGAGATTCTTGAAGTTGAGAACCCTTATGCTGCTTTTAGGGATGAGCTGAGGAGTAACTTGGCTCAGTCGACTGTAAATGCACACATTTCTCCAGAATATGTACAAAGGAGTGCCAGTGATGACAGAGAGGTAGGTTGTTCAGAATCAACTGAATGCCAGATTGCAGAGAACTCCAAAGGAAGAAGTTTTTGGTATTCAATGGAGGGTACATCACCTACTCTTAAACGAAGAAAGATTGACGATAAAAGAGTTCATGACCTGTCTGCTTCAGTAGCCTTGAGAGAAGAGGTTCTTCACGCTGTCAAAAAAGATTCTATGTGTGCAAACTTGGAAAGAGAAGAACACAGTCCAAAGGCTTTACAAAAATTCCAAGGGCGTTCAATTTCTCAGGAGGATGATGGGAAATTAATTGTCAGTAAGAGTCCTGTTGAAGAAACACATCTAAATGAGAATCACATGGTAGAAAGGTCTGAATCTTTACCCGAGGCACAGAAGAAAGAGGGTGGAATGGGTTTGGAAGGGGAGGATAGTAGTCCAAATGCTCCATTCACTTTTTTGCATGAAGAAAAAGAAGCATCAGTTTTCTCAAGATTGATCAAGCAGGCTGCTGGGCATCCTCTAGATTCTTTGCTTGAGGATACAGGAGTAGCAGTTCCAACTGACATTAACATTGATAGAGGAAGCCAATGCTTAAAAGAGGACCCAATTTGTCTTCATCTTCAGGATGATTTAAGAGTAGAAAATGTTGAAGATTGGCCTTGTGCTGGAAGAACCATGCTTGCAAAGAGATCTGATTCTGGAGGGACCAGCAACTTCAAAGAATTGTCAGGTGGTGCTCCACATGTTGAATCCTTGGATTTGACTAGTGCGGATGAAGCAATGCCTGTACTTGAGAGGTTTGTTATAAAGACAGATGATGAACCATGTAGCATTGCTGAAGAGGGAATTAGCTTTGATGAGTGGAACCTTCCAAACACTGCATTAGAGCGTGCCGGTATTCTGGAGCAGCTTTGCAAATCAGCTTGCATGCAAACTCCCGTAGCCTATTCTTTAGCTTCCTATAAGTTGCATAAAGTTCAAAACCTACAGCAATCTGTTCCGACTGGGGTTTTGGAGCATGTAGATCTGAGGACCACCTTTCCTATAAATGATAATGTTAAGCAATTAAAGGATGGTAATAGTTCTTGGAGTGAGGAAGTTGGCCCGGCCTTTTATGGAAGTTCCTATTCTGATTGCCTACCAAATTTTAGTGGTCAATCTAGTTGGGATATTAAGAAACCTTATTCCTCTCCTGTTGGTAATCTTTGGGATAGAATTGCTTCAAGCTCTAGTAGTTCGGGGAAGCGAGTGAGCTCAATTCCAGAGCTTGCCTGTATTAGTGAAGAAAATGAGAATACAGATGAGGTAGCTGATACTTTTCAAGATGGCATTGTTTCAGAAGTGTTAGATTGTTCTCCAAAAAGGCCACCGCTTGCAGACATTACAGAAATCCCTAACCTTCCTGCTTCAGTTTCTGAAGCTGCAGCCTACACTGATAGATTTAGTCTAGATTCAGTAACCACCGAATTCAGTTTAACGGGGACTCATAAGAGCGTCAAAAAGAAGCCTGGAATCCAAAACAGCAGTAAGAGAAGATATAACAATAAGGAGAACCAGAGTGTATCACGAAAGAGAGCCACCGGATCACTTCAGAATAGGTTCAGCAAGCCAAAGTTTTCTGGAAAAACCAGTTTGAGAAAAGGAGGCCCTAGTTTGTCAGAGGTGGAGCCCAAGCGTAACAATATTGTTTCCAATATTACTTCCTTTATTCCACTTGTGCAACAGAAACAAGCAGCTGCAGCCTTACCAGGGAAGAGGGACATTAAAGTGAAGGCCCTGGAGGCTGCTGAAGCTGCAAAGCGTCTTGCAGAAAGGAAAGACAATGAACGTAAGATGAAGAAAGAAGCTATGAAGGTTGAGCGAGCAAGAGTGGAGCAAGAGAATCTGAGGAAGTTGGAGCTGCAGAGGAAAAGGAAACAAGAGGAGAGGAAAAAAATTGAGGCTGATATGGCAGCAAAGAAGAGAGAAAGGGAAGGGGAAGACAAAAAGGAGAAGCAACGAAAAAGGATGCGTGTTGAAGAAGGGCGGAGGGAGCAGAGAGAACATGAGGACAAGTTACGTGCGGAAAAAGTAAAGAAAGAAATACAATGCCAAGCCAGTGATGGAAGAAGATGCGAGAGTAAGGACTCAAAATGCAATACCGTGCATAAGAAAATGGACAAAGAAGGGGAACATGACACTCTTAGGAGCATTTCAGAGACTGATCCTAGGAGTTCCTGTGTTTCAGCAAATAATGCCAGAAGTGGAACAGCTGTCCATGAAGAGAAGAGCTTCAGTAATTTTGATCGTAAGGAAGAGGTACAGAGCAATTTAGACAAAGCCACAGAAAATGAGAAATTGGTTGTGCAGACGAGTCGAGAACAGTCTTATGATATCTCTCCATACAAAGAATCAGATGATGAAAACGACGAAGATGACGATAGTATACCAAATAATAAATTTATTCCTTCGTGGGCAAGCAAAAATTGCCTGGCTCTGGTTGCTTCTCGCCAGAGTAGAACTGACCCAGAGGTGTTCTTCCCTCCCAAAAGCTTTCCCTGTGTAGCTGAAGTTCTGTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
INCENP_ARK-bind

Protein Analysis

1728

Amino Acids

190.78

Weight (kDa)

5.36

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
INCENP_ARK-bind PF03941 1672 - 1720 3.8e-06 Inner centromere protein, ARK binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3428
AasI GACNNNNNNGTC 1 cut(s) 1042
AccBSI CCGCTC 1 cut(s) 2139
AccI GTMKAC 5 cut(s) 5, 2325, 2381, 2591, 5047
AccIII TCCGGA 1 cut(s) 1576
AciI CCGC 5 cut(s) 2139, 3392, 3992, 4648, 4685
AclWI GGATC 7 cut(s) 214, 422, 435, 1314, 2340, 4213, 4820
AcoI YGGCCR 2 cut(s) 946, 1840
AcsI RAATTY 7 cut(s) 881, 1667, 1775, 2888, 3766, 4088, 5060
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 8 cut(s) 514, 616, 736, 1030, 2625, 2731, 3411, 4923
AfiI CCNNNNNNNGG 8 cut(s) 230, 509, 875, 1883, 2161, 3287, 4371, 5098
AflIII ACRYGT 4 cut(s) 162, 1323, 1696, 3364
AhlI ACTAGT 1 cut(s) 3386
AjiI CACGTC 2 cut(s) 163, 1326
AjnI CCWGG 7 cut(s) 90, 607, 2497, 4129, 4369, 4398, 5091
AjuI GAANNNNNNNTTGG 2 cut(s) 2695, 2727
AleI CACNNNNGTG 1 cut(s) 552
AloI GAACNNNNNNTCC 2 cut(s) 3159, 3191
Alw21I GWGCWC 4 cut(s) 305, 1693, 3361, 3878
Alw26I GTCTC 5 cut(s) 447, 475, 624, 1125, 4814
Alw44I GTGCAC 1 cut(s) 301
AlwI GGATC 7 cut(s) 214, 422, 435, 1314, 2340, 4213, 4820
AlwNI CAGNNNCTG 2 cut(s) 4037, 4823
Ama87I CYCGRG 1 cut(s) 3005
Aor13HI TCCGGA 1 cut(s) 1576
ApaI GGGCCC 1 cut(s) 1662
ApaLI GTGCAC 1 cut(s) 301
ApoI RAATTY 7 cut(s) 881, 1667, 1775, 2888, 3766, 4088, 5060
ArsI GACNNNNNNTTYG 2 cut(s) 3616, 3648
AseI ATTAAT 1 cut(s) 2930
Asp700I GAANNNNTTC 4 cut(s) 2811, 3841, 4220, 4892
AspA2I CCTAGG 1 cut(s) 4829
AsuC2I CCSGG 1 cut(s) 3728
AsuHPI GGTGA 5 cut(s) 797, 1052, 1329, 1739, 2727
AsuII TTCGAA 1 cut(s) 727
AvaI CYCGRG 1 cut(s) 3005
AvaII GGWCC 5 cut(s) 94, 1229, 3223, 3327, 3654
AvrII CCTAGG 1 cut(s) 4829
AxyI CCTNAGG 1 cut(s) 1341
BaeGI GKGCMC 3 cut(s) 305, 371, 1662
BaeI ACNNNNGTAYC 2 cut(s) 3153, 3186
BalI TGGCCA 2 cut(s) 948, 1842
BamHI GGATCC 1 cut(s) 427
BanII GRGCYC 4 cut(s) 718, 1662, 3878, 4293
BbsI GAAGAC 3 cut(s) 2427, 3227, 4608
Bbv12I GWGCWC 4 cut(s) 305, 1693, 3361, 3878
BbvCI CCTCAGC 1 cut(s) 2570
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 4958, 4992
BciT130I CCWGG 7 cut(s) 92, 609, 2499, 4131, 4371, 4400, 5093
BciVI GTATCC 2 cut(s) 631, 3154
BclI TGATCA 3 cut(s) 1452, 2305, 3117
BcnI CCSGG 1 cut(s) 3728
BcoDI GTCTC 5 cut(s) 447, 475, 624, 1125, 4814
BcuI ACTAGT 1 cut(s) 3386
BfmI CTRYAG 6 cut(s) 267, 1270, 3608, 4044, 4359, 4523
BfuI GTATCC 2 cut(s) 631, 3154
BglI GCCNNNNNGGC 1 cut(s) 4403
BglII AGATCT 6 cut(s) 30, 695, 932, 1826, 3311, 3646
BlnI CCTAGG 1 cut(s) 4829
BmcAI AGTACT 1 cut(s) 736
Bme1390I CCNGG 8 cut(s) 92, 609, 2499, 3728, 4131, 4371, 4400, 5093
Bme18I GGWCC 5 cut(s) 94, 1229, 3223, 3327, 3654
BmeT110I CYCGRG 1 cut(s) 3005
BmgBI CACGTC 2 cut(s) 163, 1326
BmiI GGNNCC 6 cut(s) 429, 1660, 3225, 3328, 3488, 4290
BmrFI CCNGG 8 cut(s) 92, 609, 2499, 3728, 4131, 4371, 4400, 5093
BmrI ACTGGG 3 cut(s) 1556, 2338, 3636
BmuI ACTGGG 3 cut(s) 1556, 2338, 3636
BoxI GACNNNNGTC 1 cut(s) 1104
BpiI GAAGAC 3 cut(s) 2427, 3227, 4608
BpmI CTGGAG 4 cut(s) 2598, 3342, 3545, 4421
Bpu10I CCTNAGC 1 cut(s) 2570
Bpu14I TTCGAA 1 cut(s) 727
BpuEI CTTGAG 7 cut(s) 1123, 1461, 1511, 2821, 3094, 3176, 3434
BpuMI CCSGG 1 cut(s) 3728
Bsa29I ATCGAT 1 cut(s) 2335
BsaAI YACGTR 1 cut(s) 4682
BsaJI CCNNGG 7 cut(s) 2079, 2893, 3006, 3375, 4370, 4398, 4829
BsaWI WCCGGW 2 cut(s) 1576, 4202
Bsc4I CCNNNNNNNGG 8 cut(s) 230, 509, 875, 1883, 2161, 3287, 4371, 5098
Bse118I RCCGGY 2 cut(s) 502, 3515
Bse21I CCTNAGG 1 cut(s) 1341
Bse3DI GCAATG 7 cut(s) 53, 114, 238, 352, 772, 3408, 3453
BseAI TCCGGA 1 cut(s) 1576
BseBI CCWGG 7 cut(s) 92, 609, 2499, 4131, 4371, 4400, 5093
BseCI ATCGAT 1 cut(s) 2335
BseDI CCNNGG 7 cut(s) 2079, 2893, 3006, 3375, 4370, 4398, 4829
BseLI CCNNNNNNNGG 8 cut(s) 230, 509, 875, 1883, 2161, 3287, 4371, 5098
BseMI GCAATG 7 cut(s) 53, 114, 238, 352, 772, 3408, 3453
BseMII CTCAG 8 cut(s) 486, 504, 1332, 2561, 2600, 2924, 3641, 4499
BseRI GAGGAG 6 cut(s) 123, 139, 536, 2177, 2587, 4559
BseSI GKGCMC 3 cut(s) 305, 371, 1662
BseYI CCCAGC 6 cut(s) 560, 667, 1126, 1253, 1661, 3131
BsgI GTGCAG 2 cut(s) 2448, 4988
BshVI ATCGAT 1 cut(s) 2335
BsiHKAI GWGCWC 4 cut(s) 305, 1693, 3361, 3878
BsiHKCI CYCGRG 1 cut(s) 3005
BsiSI CCGG 6 cut(s) 120, 503, 1577, 3516, 3728, 4203
BslFI GGGAC 3 cut(s) 3340, 4117, 4394
BslI CCNNNNNNNGG 8 cut(s) 230, 509, 875, 1883, 2161, 3287, 4371, 5098
BsmAI GTCTC 5 cut(s) 447, 475, 624, 1125, 4814
BsmBI CGTCTC 2 cut(s) 447, 624
BsmFI GGGAC 3 cut(s) 3340, 4117, 4394
BsmI GAATGC 2 cut(s) 1709, 2681
BsoBI CYCGRG 1 cut(s) 3005
Bsp119I TTCGAA 1 cut(s) 727
Bsp120I GGGCCC 1 cut(s) 1658
Bsp1286I GDGCHC 8 cut(s) 305, 371, 718, 1662, 1693, 3361, 3878, 4293
Bsp13I TCCGGA 1 cut(s) 1576
Bsp1407I TGTACA 1 cut(s) 2623
BspACI CCGC 5 cut(s) 2139, 3392, 3992, 4648, 4685
BspCNI CTCAG 9 cut(s) 4, 485, 503, 1333, 2562, 2599, 2923, 3642, 4500
BspDI ATCGAT 1 cut(s) 2335
BspEI TCCGGA 1 cut(s) 1576
BspHI TCATGA 2 cut(s) 175, 2776
BspLI GGNNCC 6 cut(s) 429, 1660, 3225, 3328, 3488, 4290
BspMAI CTGCAG 3 cut(s) 4048, 4363, 4527
BspPI GGATC 7 cut(s) 214, 422, 435, 1314, 2340, 4213, 4820
BspQI GCTCTTC 2 cut(s) 2176, 4883
BspT104I TTCGAA 1 cut(s) 727
BsrBI CCGCTC 1 cut(s) 2139
BsrDI GCAATG 7 cut(s) 53, 114, 238, 352, 772, 3408, 3453
BsrFI RCCGGY 2 cut(s) 502, 3515
BsrGI TGTACA 1 cut(s) 2623
BssAI RCCGGY 2 cut(s) 502, 3515
BssECI CCNNGG 7 cut(s) 2079, 2893, 3006, 3375, 4370, 4398, 4829
BssNAI GTATAC 1 cut(s) 5048
BssT1I CCWWGG 4 cut(s) 2079, 2893, 3375, 4829
Bst1107I GTATAC 1 cut(s) 5048
Bst2UI CCWGG 7 cut(s) 92, 609, 2499, 4131, 4371, 4400, 5093
BstAPI GCANNNNNTGC 3 cut(s) 25, 4856, 5088
BstAUI TGTACA 1 cut(s) 2623
BstBAI YACGTR 1 cut(s) 4682
BstBI TTCGAA 1 cut(s) 727
BstENI CCTNNNNNAGG 1 cut(s) 2159
BstMAI GTCTC 5 cut(s) 447, 475, 624, 1125, 4814
BstNI CCWGG 7 cut(s) 92, 609, 2499, 4131, 4371, 4400, 5093
BstNSI RCATGY 4 cut(s) 1700, 3368, 3553, 3644
BstPAI GACNNNNGTC 1 cut(s) 1104
BstSCI CCNGG 8 cut(s) 90, 607, 2497, 3726, 4129, 4369, 4398, 5091
BstSFI CTRYAG 6 cut(s) 267, 1270, 3608, 4044, 4359, 4523
BstSLI GKGCMC 3 cut(s) 305, 371, 1662
BstV2I GAAGAC 3 cut(s) 2427, 3227, 4608
BstX2I RGATCY 7 cut(s) 30, 427, 695, 932, 1826, 3311, 3646
BstXI CCANNNNNNTGG 1 cut(s) 2125
BstYI RGATCY 7 cut(s) 30, 427, 695, 932, 1826, 3311, 3646
BstZ17I GTATAC 1 cut(s) 5048
Bsu15I ATCGAT 1 cut(s) 2335
Bsu36I CCTNAGG 1 cut(s) 1341
BsuI GTATCC 2 cut(s) 631, 3154
BsuTUI ATCGAT 1 cut(s) 2335
BtrI CACGTC 2 cut(s) 163, 1326
BtsI GCAGTG 2 cut(s) 2436, 3498
CaiI CAGNNNCTG 2 cut(s) 4037, 4823
CciI TCATGA 2 cut(s) 175, 2776
Cfr10I RCCGGY 2 cut(s) 502, 3515
ClaI ATCGAT 1 cut(s) 2335
CseI GACGC 3 cut(s) 2175, 4105, 4412
Csp6I GTAC 8 cut(s) 513, 615, 735, 1029, 2624, 2730, 3410, 4922
CspCI CAANNNNNGTGG 2 cut(s) 1053, 1088
CviQI GTAC 8 cut(s) 513, 615, 735, 1029, 2624, 2730, 3410, 4922
DraI TTTAAA 2 cut(s) 1860, 1941
DraIII CACNNNGTG 1 cut(s) 215
DrdI GACNNNNNNGTC 1 cut(s) 1042
DseDI GACNNNNNNGTC 1 cut(s) 1042
EaeI YGGCCR 2 cut(s) 946, 1840
EciI GGCGGA 1 cut(s) 4663
Ecl136II GAGCTC 1 cut(s) 3876
Eco130I CCWWGG 4 cut(s) 2079, 2893, 3375, 4829
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 4 cut(s) 718, 1662, 3878, 4293
Eco32I GATATC 2 cut(s) 807, 4996
Eco47I GGWCC 5 cut(s) 94, 1229, 3223, 3327, 3654
Eco53kI GAGCTC 1 cut(s) 3876
Eco81I CCTNAGG 1 cut(s) 1341
Eco88I CYCGRG 1 cut(s) 3005
EcoICRI GAGCTC 1 cut(s) 3876
EcoNI CCTNNNNNAGG 1 cut(s) 2159
EcoO109I RGGNCCY 6 cut(s) 94, 1229, 1658, 3223, 4268, 4396
EcoRI GAATTC 1 cut(s) 4088
EcoRII CCWGG 7 cut(s) 90, 607, 2497, 4129, 4369, 4398, 5091
EcoRV GATATC 2 cut(s) 807, 4996
EcoT14I CCWWGG 4 cut(s) 2079, 2893, 3375, 4829
EcoT38I GRGCYC 4 cut(s) 718, 1662, 3878, 4293
ErhI CCWWGG 4 cut(s) 2079, 2893, 3375, 4829
Esp3I CGTCTC 2 cut(s) 447, 624
FalI AAGNNNNNCTT 2 cut(s) 2799, 2831
FaqI GGGAC 3 cut(s) 3340, 4117, 4394
FbaI TGATCA 3 cut(s) 1452, 2305, 3117
FblI GTMKAC 5 cut(s) 5, 2325, 2381, 2591, 5047
FriOI GRGCYC 4 cut(s) 718, 1662, 3878, 4293
GsaI CCCAGC 6 cut(s) 564, 671, 1130, 1257, 1665, 3135
GsuI CTGGAG 4 cut(s) 2598, 3342, 3545, 4421
HapII CCGG 6 cut(s) 120, 503, 1577, 3516, 3728, 4203
HgaI GACGC 3 cut(s) 2175, 4105, 4412
HincII GTYRAC 2 cut(s) 6, 2592
HindII GTYRAC 2 cut(s) 6, 2592
HindIII AAGCTT 1 cut(s) 5152
HpaII CCGG 6 cut(s) 120, 503, 1577, 3516, 3728, 4203
HphI GGTGA 5 cut(s) 797, 1052, 1329, 1739, 2727
Hpy99I CGWCG 3 cut(s) 10, 164, 5033
HpyCH4IV ACGT 7 cut(s) 162, 440, 477, 617, 1325, 4450, 4681
HpySE526I ACGT 7 cut(s) 162, 440, 477, 617, 1325, 4450, 4681
Kpn2I TCCGGA 1 cut(s) 1576
Ksp22I TGATCA 3 cut(s) 1452, 2305, 3117
LguI GCTCTTC 2 cut(s) 2176, 4883
MaeII ACGT 7 cut(s) 162, 440, 477, 617, 1325, 4450, 4681
MaeIII GTNAC 8 cut(s) 403, 436, 2069, 2187, 2576, 4078, 4298, 4677
MbiI CCGCTC 1 cut(s) 2139
MfeI CAATTG 2 cut(s) 1263, 2101
MflI RGATCY 7 cut(s) 30, 427, 695, 932, 1826, 3311, 3646
MhlI GDGCHC 8 cut(s) 305, 371, 718, 1662, 1693, 3361, 3878, 4293
MlsI TGGCCA 2 cut(s) 948, 1842
MluNI TGGCCA 2 cut(s) 948, 1842
MlyI GAGTC 8 cut(s) 477, 482, 1285, 1940, 2953, 4099, 4742, 4984
MmeI TCCRAC 4 cut(s) 1538, 3203, 3647, 4497
Mox20I TGGCCA 2 cut(s) 948, 1842
MroI TCCGGA 1 cut(s) 1576
MroXI GAANNNNTTC 4 cut(s) 2811, 3841, 4220, 4892
MscI TGGCCA 2 cut(s) 948, 1842
MslI CAYNNNNRTG 6 cut(s) 243, 552, 1299, 2196, 2967, 4388
Msp20I TGGCCA 2 cut(s) 948, 1842
MspA1I CMGCKG 2 cut(s) 4358, 4874
MspI CCGG 6 cut(s) 120, 503, 1577, 3516, 3728, 4203
MspR9I CCNGG 8 cut(s) 92, 609, 2499, 3728, 4131, 4371, 4400, 5093
MunI CAATTG 2 cut(s) 1263, 2101
Mva1269I GAATGC 2 cut(s) 1709, 2681
MvaI CCWGG 7 cut(s) 92, 609, 2499, 4131, 4371, 4400, 5093
NciI CCSGG 1 cut(s) 3728
NlaIV GGNNCC 6 cut(s) 429, 1660, 3225, 3328, 3488, 4290
NmuCI GTSAC 2 cut(s) 403, 2187
NspI RCATGY 4 cut(s) 1700, 3368, 3553, 3644
NspV TTCGAA 1 cut(s) 727
OliI CACNNNNGTG 1 cut(s) 552
PaeI GCATGC 1 cut(s) 3553
PagI TCATGA 2 cut(s) 175, 2776
PceI AGGCCT 1 cut(s) 77
PciI ACATGT 2 cut(s) 1696, 3364
PciSI GCTCTTC 2 cut(s) 2176, 4883
PcsI WCGNNNNNNNCGW 2 cut(s) 211, 5037
PctI GAATGC 2 cut(s) 1709, 2681
PdmI GAANNNNTTC 4 cut(s) 2811, 3841, 4220, 4892
PleI GAGTC 8 cut(s) 476, 482, 1284, 1939, 2952, 4099, 4742, 4983
PpsI GAGTC 8 cut(s) 476, 482, 1284, 1939, 2952, 4099, 4742, 4983
Ppu21I YACGTR 1 cut(s) 4682
PpuMI RGGWCCY 3 cut(s) 94, 1229, 3223
PscI ACATGT 2 cut(s) 1696, 3364
PshAI GACNNNNGTC 1 cut(s) 1104
PshBI ATTAAT 1 cut(s) 2930
PsiI TTATAA 1 cut(s) 3428
Psp124BI GAGCTC 1 cut(s) 3878
Psp5II RGGWCCY 3 cut(s) 94, 1229, 3223
Psp6I CCWGG 7 cut(s) 90, 607, 2497, 4129, 4369, 4398, 5091
PspFI CCCAGC 6 cut(s) 560, 667, 1126, 1253, 1661, 3131
PspGI CCWGG 7 cut(s) 90, 607, 2497, 4129, 4369, 4398, 5091
PspN4I GGNNCC 6 cut(s) 429, 1660, 3225, 3328, 3488, 4290
PspOMI GGGCCC 1 cut(s) 1658
PspPPI RGGWCCY 3 cut(s) 94, 1229, 3223
PsrI GAACNNNNNNTAC 1 cut(s) 5157
PstI CTGCAG 3 cut(s) 4048, 4363, 4527
PstNI CAGNNNCTG 2 cut(s) 4037, 4823
PsuI RGATCY 7 cut(s) 30, 427, 695, 932, 1826, 3311, 3646
PvuII CAGCTG 2 cut(s) 4358, 4874
RsaI GTAC 8 cut(s) 514, 616, 736, 1030, 2625, 2731, 3411, 4923
RsaNI GTAC 8 cut(s) 513, 615, 735, 1029, 2624, 2730, 3410, 4922
RseI CAYNNNNRTG 6 cut(s) 243, 552, 1299, 2196, 2967, 4388
SacI GAGCTC 1 cut(s) 3878
SalI GTCGAC 2 cut(s) 4, 2590
SapI GCTCTTC 2 cut(s) 2176, 4883
ScaI AGTACT 1 cut(s) 736
SchI GAGTC 8 cut(s) 477, 482, 1285, 1940, 2953, 4099, 4742, 4984
ScrFI CCNGG 8 cut(s) 92, 609, 2499, 3728, 4131, 4371, 4400, 5093
SduI GDGCHC 8 cut(s) 305, 371, 718, 1662, 1693, 3361, 3878, 4293
SfcI CTRYAG 6 cut(s) 267, 1270, 3608, 4044, 4359, 4523
SfuI TTCGAA 1 cut(s) 727
SinI GGWCC 5 cut(s) 94, 1229, 3223, 3327, 3654
SmiMI CAYNNNNRTG 6 cut(s) 243, 552, 1299, 2196, 2967, 4388
SmlI CTYRAG 7 cut(s) 1138, 1476, 1490, 2800, 3109, 3155, 3413
SmoI CTYRAG 7 cut(s) 1138, 1476, 1490, 2800, 3109, 3155, 3413
SpeI ACTAGT 1 cut(s) 3386
SphI GCATGC 1 cut(s) 3553
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 5 cut(s) 2139, 3392, 3992, 4648, 4685
SspI AATATT 2 cut(s) 4306, 4318
SstI GAGCTC 1 cut(s) 3878
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 8 cut(s) 90, 607, 2497, 3726, 4129, 4369, 4398, 5091
StyI CCWWGG 4 cut(s) 2079, 2893, 3375, 4829
TaiI ACGT 7 cut(s) 165, 443, 480, 620, 1328, 4453, 4684
TatI WGTACW 3 cut(s) 734, 2623, 3409
TseFI GTSAC 2 cut(s) 403, 2187
Tsp45I GTSAC 2 cut(s) 403, 2187
TspGWI ACGGA 3 cut(s) 320, 2252, 2420
VneI GTGCAC 1 cut(s) 301
VpaK11BI GGWCC 5 cut(s) 94, 1229, 3223, 3327, 3654
VspI ATTAAT 1 cut(s) 2930
XagI CCTNNNNNAGG 1 cut(s) 2159
XapI RAATTY 7 cut(s) 881, 1667, 1775, 2888, 3766, 4088, 5060
XbaI TCTAGA 5 cut(s) 935, 1829, 2177, 3142, 4069
XceI RCATGY 4 cut(s) 1700, 3368, 3553, 3644
XcmI CCANNNNNNNNNTGG 1 cut(s) 4721
XmaJI CCTAGG 1 cut(s) 4829
XmiI GTMKAC 5 cut(s) 5, 2325, 2381, 2591, 5047
XmnI GAANNNNTTC 4 cut(s) 2811, 3841, 4220, 4892
ZrmI AGTACT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.